Array 1 15368-13874 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEX01000027.1 Salinivibrio sp. IB870 scaffold27.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15367 29 100.0 32 ............................. GCAAGGCGCTGCATTGGATTTGATGATAGCGA 15306 29 100.0 32 ............................. CTTATGCCCTAAATTAGGTATTGTCAACAATT 15245 29 100.0 32 ............................. AGACGTCCTGCGCCTGTAATTGCTGCTCTGTC 15184 29 100.0 32 ............................. CGTCACAACATCCAATATGGGCGAGTTGGTGA 15123 29 100.0 32 ............................. CTGGAAGCGCTGGAGTCTGAAATCACCATTTC 15062 29 100.0 32 ............................. GGCGTGCCTTGGTTGACTGATATGGTTAACCC 15001 29 100.0 32 ............................. TTTGGCAAGGAGGTTAGCGGCTCGGTCGTGGT 14940 29 100.0 32 ............................. GAAATTGAGGGTGGAGTGACGATTAATGACGA 14879 29 100.0 32 ............................. AGACCCCTATTGAGTTTGTCTAGTAGGGCTCG 14818 29 100.0 32 ............................. CCAACTGAGTTCACGTCTGTTCAGCCTGAAAA 14757 29 100.0 32 ............................. CAATGAAGCTGGATTGAAATATTACGAGGTCA 14696 29 100.0 32 ............................. TATTAGAAATTTAAAACGCATACGGGGCGGCA 14635 29 100.0 32 ............................. CGTTCATTTCGCTCGACTACATGGACTTCGTG 14574 29 100.0 32 ............................. GGGTTTTTATTGGTAGAAATGGTAAAAAGTAT 14513 29 100.0 32 ............................. TCGCGTACAACGTCAGCCAGCAAACCGCAGCC 14452 29 100.0 32 ............................. TTCAAGGCAACGACCGACGAAGCAATCAAGGC 14391 29 100.0 32 ............................. CTAGATGGCATCGATGAGACAACGCAGCGCCG 14330 29 100.0 32 ............................. GACGGCGACGTTTTCTAGTTCGCATATGCACA 14269 29 100.0 32 ............................. TGCTGGCTATAACGTTGCACTTGATGACGCAA 14208 29 100.0 33 ............................. TGAAAACAGACAGCGTCGAGGTGGCAACCATGC 14146 29 100.0 32 ............................. CGTTTTTGGTGCGAGAAGTCACCAAACAACTT 14085 29 100.0 32 ............................. GTGGTGCGCAAGGGCGGCGTTGGAATCGAGAA 14024 29 100.0 32 ............................. GTTGCCAGGTGTTTTGTCGCGGCACTGATTTT 13963 29 100.0 32 ............................. GCCAGATAATCTGGCCTTTGGGTTTAACACAC 13902 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 100.0 32 GTGTTCCCCGTGCCCACGGGGATGAACCG # Left flank : TCCGATGATCGAAGAGGTATTAGCGGCAGGTGATATTACACCGCCTGAACCGCCTCATGACGCCCAACCACCAGCTATACCTGAGCCAAAATCAATCGGTGATAGCGGACATAGGAGCGGCTAGATAATGAGTATGCTTGTTGTCGTCACCGAAGCCGTACCGCCAAGGTTACGTGGCCGACTTGCGGTCTGGTTGCTCGAAGTTCGCGCTGGTGTTTATGTGGGCGATGTAACACGTCGCGTGCGGGAAATGATTTGGGAGCAAATAACTGAACTCGCTGATGTCGGCAACGTGGTGATGTGTTGGGCGGTGAATAATGAATCAGGTTTTGACTTTCAAACTTATGGTGAAAACCGTCGGGAGCCTGTCGATTTAGATGGTTTAAGGTTGGTGGTATTTAAGCCGAGTGATGAGGATAAATAAGCCCAGTTTGCTCTTTAAAAAGTTGGTAGAAAAATGCAGGTCGATTTTTGTTATATAAAACAGTAATATCCGCTTA # Right flank : ATTTTCGCTGAGATGGGTGGCTGGGAATGTTTGTGTTCTCTGTCCTCACGGGAGGTGAGATTGGAGAGAGTGTCGAACATGTTACGAGTAGGTGTTTTGGCAGCATATCGATACACTATTTGCGTTAGTAATAACAAGGGTCCTCGATAAGGCTGAGACCGTCTAATCTCAGCCTGATAATGTTGCCGAGTGCTAATAAGCTACGCCTCACTCAGTTGTTCGACCGCCTCCAGTGCTTGAGAGCCGTAAATCAATGACGGGCCGCCGCCCATTACGATCGCGACGTTAATGGTCTCTACGCATTCTTGTTTGGTTGCGCCATGTTTGAGCGCGGCGGCTACGTGTGCACCAATACAGCCATCGCAGCGTGCGGCAATACCAATCCCTAGTGCAATTAACTCTTTGGTTTTTACGTCAAGATCGCCCTCTGCCATGGCTGCCCGATGAAGCTGTCCAAATGCGGACAGAGTATCACTGCTGTGAGCTTTAAATTGTTTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGCCCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 86704-85776 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEX01000003.1 Salinivibrio sp. IB870 scaffold3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 86703 28 100.0 32 ............................ AAAAAAATGGAAGCGCGTGAACACCTAGGAAA 86643 28 100.0 32 ............................ GCCAATTAGGCGCAATCACGCCATAAGCGGCC 86583 28 100.0 32 ............................ TGAGTATCCGGCTGCGCACTTTGAGAAGAACT 86523 28 100.0 32 ............................ AAAATCCGCAACGGTTACACTCAAAGTCGCAA 86463 28 100.0 32 ............................ TGTTCGTCATCGTGCACACCTGCGGTCTTACG 86403 28 100.0 32 ............................ GTGCTGTGTGTGCATCACGCCGGTTTCTTTCT 86343 28 100.0 32 ............................ ACTTGGCCAGCGGGGCCAGGTTGGTGCCCTCC 86283 28 100.0 32 ............................ TATGAAATAGCGTTGCCACAGTATCAACGCGG 86223 28 96.4 32 ..................G......... ATGCGATGCAAGCGCAAGCCGTGCAAAGCTCG 86163 28 100.0 32 ............................ TCGCGATGGTGATGTATCCATTCAGTGGATGA 86103 28 100.0 32 ............................ CGACGAAACCACAGCAAAAGCTGGCAGCGTGG 86043 28 96.4 32 ..........A................. TATGACAAGGGTAACATAAAGGAAACTAACCC 85983 28 100.0 32 ............................ GCACGGCTAATTGATACCCCCCCGAGTACGCT 85923 28 100.0 32 ............................ AACAACGCACTTTAAAATCAATTTTGAATCAC 85863 28 100.0 32 ............................ TTTAGTGGGGTTCGAGCGCTCACTGTTCAGAA 85803 28 85.7 0 .....................G...GTG | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTGCAAGACTATGCCTACTTTAAACGCTGGAACTACAAATCGCCGCAGCGACTGTATAAAAATGTCGATCGGCGTGCGGCCGCGATTGCCAGCAAAAATGGTTACGATGAGGAGGAAGTAAAGCGTCGTTTGTTGGCAAACATTAAAACGGACGACAAACGCTGGTCCCTGCCTTTTATTCAAGTGACCAGCCTGTCGAGCCAAAAACGAGCGGGGCAGCCAAATACCGAGTTCGCCTTGTATATCGAGCGGGAACTCACCAAACAGCCGCCCAATAATGGCCAACCATTCACCTGTTATGGGTTAAGCAGACGAGAGCCCGACCAGCAATGTGCGGTGCCGTGTTTTTGAGGGGGCAACCCCTCTTTACCCCTTCTTTTTGGCTCTTTAAAAATATACGGGAAATACAGTCAGTTACAGCAGGTGCTTTTTAACAAGGGTAAAAGACGATTTTTATCCTAACAGCCTGTTGTACCTGACGATTGTTAGGTTATTCTATT # Right flank : ACACAAGCCCCAGCACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTGTCACGATCGAGTTTTATCGTTGGCGCCGATGTCGGAGGCGCGCAGTCCACTTGGGTAACAGATGGCTGACATTGCACTGGCGCTTGTCCGACCTACGCACAGGCAGCGACGGTGACACAAGCCCCAGCACTATGTTGGATAGGGGACATTGCCAACGGGTGCGCGTCGGCCAGGTACCTATAACTCACATCATACTGGCGCTTGTCGACCTACGTGAACGTTAACGTCGGTGGTGCCATTGGCGATGCTGCCTGTCTGGGTTTTTCATTGAAATGACTAGTTTAATGTATCTATGAGCCACTTAACTTTATGGCCCTACATTAATCGTTGCGTTTATTTTTATCGAGTAATCAAAAACTAATTGATATCGAGACTTTTCCTGTCCAGCTTTTTTTAATTGATGGCGAGAATCTATTCTACGATCAAACGGTAGTGGCATTTTGGTCGAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 101472-100274 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEX01000003.1 Salinivibrio sp. IB870 scaffold3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================== ================== 101471 28 100.0 32 ............................ GTCAGTGGCAAGGCCACACAGCGACGCTTTCT 101411 28 100.0 32 ............................ TTGAAGATGATCCCCCGGCTATCGAATACCGC 101351 28 100.0 32 ............................ TAGGGTTGGGATTTCGTAACGAGCGCCCGAAA 101291 28 100.0 32 ............................ GGCGCGATGCTGTTTATCGATGACGCGCATAA 101231 28 100.0 32 ............................ TCGCTGAAAGGCATCCTCGGCCCTGGCGCCGA 101171 28 100.0 32 ............................ TTGCGCACTTTGCCTGCGACAATCGGGTCGAT 101111 28 100.0 32 ............................ TTTCGCCATTTTCTGGACCATCTGCCCCGCGT 101051 28 100.0 32 ............................ GTGAGCCTCAGTGTCGTGTAGTAGCTGGACAT 100991 28 100.0 32 ............................ TAGACAATCAGTGTATTTTTACTCGGTTGGTA 100931 28 100.0 32 ............................ TGGCGTTGTCGACCTGGCCACCGCTTCCGGCC 100871 28 100.0 32 ............................ AGACGCAGACAATGGTGACGCGTCAAGATATG 100811 28 100.0 32 ............................ ATGTGACAGCGGATGTTGCTATCGGTGTATGC 100751 28 100.0 32 ............................ GTTTGCGCTTGCTCAATATGACATTGTTCATG 100691 28 100.0 32 ............................ TTGGCGTAGTTGTTTTGCTTGTAGTACTCCAA 100631 28 85.7 136 .....................G...GTG ACACAAGCCCCAGCACTATGTTGGATAGGGGACATTGCTAACGGGCGCCTATCACGATCGAGGTTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGTCCGCTTGGATAATAGATGGCTGACATTGCACTGGCGCTT 100467 28 71.4 136 ..C...CTA............G...GTG ACACAAGCCCCAGCACTATGTTGGATAGGAGACATTGCCAACGGGCGCCTGTCACGATCGAGATTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGGCTGCTTGGGTAATAGATGGCTGACATTGCACTGGCGCTT G [100460] 100302 28 71.4 0 ..C...CTA............G...GTG | G [100295] ========== ====== ====== ====== ============================ ======================================================================================================================================== ================== 17 28 95.8 45 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTATTCGCCCATATTCCGATGCGGTGATGCTGTCACTTATCGTCAATATGGTCACTTTTTGGCGGCTTTAAACTTGTATTGTGTCTTACAATGGCTACGCACCACGCTCCTGGAACGCAGGGCTGTGTGCTTGGTTTTGCGACCACGTGTACGCGTACGCCATACTTTGAAACTACGCGGTTTTAATTCACGTCGCATTAAAGCAATCACATCATCTTGGCGTAGCCCATAGAGTGCTTCAATCGCCTCAAACGGGGTCCTATCTTCCCACGCCATTTCAATGATCCGGTCTAAGTCACCAGGCTCAGTCAGTCGCATAGTCTCCTCCTCGCATTGGACTAATAATTACGTATACGTTGAGCAACGCGGATCAATAAGTGGGGATGCCTAAACCCCTTATGACCCTTATTTTTTGACTTTTTAAAAATAAACAATAAATACAGCTAGTTAAGAAAGGCCATTTTAAACAAGGGTAAAAGGCCATTTTTATCCTAACTATT # Right flank : ACACAAGCCCCAGCACTATGTTGGATAGGAGACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGTCCGCTTGGGTAATAGATGGGGGACATTGCACTGGCGCTTGTCCGACCTACGCATAGGCAGCGTAGGTGACACAAGCGCCGGTACGGTGTTGGATAGATAAAAACTGTCAACGGGCGCCTGGCTCGATTGGCGCTTATATCAAACGATGTAAATGCACCATGCTAGTCTTGATGTTGTGACTTATTAAACAATGAATATGTTGTAATTCCTTAAATGACAACTAATATGTTGTATATAGACTATAGTACAACATTAAAGTTGTTTGAGGGTGTGATGGTGTCACTAAAAGATATAGCGCGTGCATTGCAAGCGCGTCGCAAGTCACTTGGGCTAGAGCAGTCTGACATGTACATGCGTATTGGCATGAAACAACAGCAGTACCAGCGAGTAGAGGCGGGGAGTG # Questionable array : NO Score: 4.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-1.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //