Array 1 3713518-3711614 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXYD010000001.1 Salmonella enterica strain S15BD05371 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3713517 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 3713456 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3713395 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3713334 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3713273 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 3713212 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 3713151 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3713089 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3713028 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3712967 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3712906 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3712845 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3712784 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3712723 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3712662 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3712601 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3712540 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3712479 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3712418 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3712357 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3712295 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3712192 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3712131 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3712070 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3712009 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3711948 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3711887 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3711826 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3711765 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3711704 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3711643 29 96.6 0 A............................ | A [3711616] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3731142-3729649 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXYD010000001.1 Salmonella enterica strain S15BD05371 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3731141 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3731080 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3731019 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3730958 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3730897 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3730836 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3730775 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3730714 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3730653 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3730592 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3730531 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3730470 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3730409 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3730348 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3730287 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3730226 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3730164 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3730103 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3730042 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3729981 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3729920 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3729859 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3729798 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3729737 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3729676 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //