Array 1 1047876-1048169 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075964.1 Clostridium perfringens strain 346/91 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1047876 29 100.0 37 ............................. CAAAGTTTTTTGTGTTATAAAATGTACATTATTGCTT 1047942 29 100.0 37 ............................. CCAAGTTCCAGAAGGAACTATAAGTAAAGAAACTGGA 1048008 29 100.0 38 ............................. CAATCATTAACACTAGCTTTTTGAGATACTAAATTATC 1048075 29 100.0 37 ............................. TGGATTCTCACTTTTAATAGTTTTTTTCTTATGTTGA 1048141 29 89.7 0 ........C......A.G........... | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 97.9 38 GTTGAACAATAACATGATATGTATTTAAA # Left flank : TAACATATAATGTATTTAAACTTTTTGTCTGCAGGTATAAATCTACCTTCTGCATCTGTTGAACAATAACATAAGATGTATTTAAACTCTAAGTTAGGAAGTTCTACTATTTTTACACTATTAGTTGAACAATAACATGATATGTATTTAAACAACATATATGTTAATATATAAACTTCTTTGAAGGCGTTGAACAATAACATAAGATGTATTTAAACAACATAGCTGCTTTAGATTTTGCAAGATTTGCGATAGTTGAACAGTATATTCTATTAATAGGAGGTCAAGTATTATTAGAATTCAAGTTATCTAGTGTTAATTATTTTACCAGTGAAGAAGAGAGTGAGAATATGATCTAAGTATTGAAATAAGTTGGTTTAAGAGCTGTTTTGTTTAAGCACTTTAAAAATTTGAAAAACATTGGTAAAATTATAATGTACCTATTGGAATAGCTAGGTTTTCGTAAAAATATAATAAGTTAAAATGGCTATTTTACAATG # Right flank : ACAACATAGCTGCTTTAGATTTTGCAAGATTTTCGATAGTTGAACAGTATATTCTATTAATAGGAAGTCAAGTATTATTAGAATTTAAGTTCTCTAGTGTTAATTATTTTACCAGTGAAGAAGATAGTGAGAATATGATCTAAGTATTGAAATAAGTTGGTTTAAGAGCTGTTTTATTTGAGCACTTTAAAAAATTGAAAAACACTGGTAAAATTATGATGTACTTATTGAAATAACTAGATTTTCGTAAAAAGCTAATAAGTTAAAATGGCTATTTTACAAGTTTTGAACATTAACATAGAATGTATTTAAACTTCTTCCTCTAGCTGAGTTTCCTAATGATGCTCTGGTTGAACATTAACATAGAATGTATTTAAACTATAGCTCTGGAATGTTTTTAGCATCATCAGTAAGAGTTGAACATTAACATAGAATGTATTTAAACCAACATGGATTACCAAATGAGCAGGCACATTTTAAGTTGAACATTAACATAGAAT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGATATGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 1048453-1048809 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075964.1 Clostridium perfringens strain 346/91 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1048453 30 96.7 35 T............................. TTCTTCCTCTAGCTGAGTTTCCTAATGATGCTCTG 1048518 30 100.0 36 .............................. TATAGCTCTGGAATGTTTTTAGCATCATCAGTAAGA 1048584 30 100.0 35 .............................. CAACATGGATTACCAAATGAGCAGGCACATTTTAA 1048649 30 100.0 36 .............................. ATGAAGAGGGAGCTTGATAACTACGTTAAAGTTCTT 1048715 30 100.0 36 .............................. TAAGTGTGGTTTATAAGATCCGGTCTTTTCTCTGCT 1048781 29 83.3 0 ........C.......AG..A..-...... | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 96.7 36 GTTGAACATTAACATAGAATGTATTTAAAC # Left flank : ACATGATATGTATTTAAACCAAGTTCCAGAAGGAACTATAAGTAAAGAAACTGGAGTTGAACAATAACATGATATGTATTTAAACAATCATTAACACTAGCTTTTTGAGATACTAAATTATCGTTGAACAATAACATGATATGTATTTAAATGGATTCTCACTTTTAATAGTTTTTTTCTTATGTTGAGTTGAACACTAACATAAGATGTATTTAAACAACATAGCTGCTTTAGATTTTGCAAGATTTTCGATAGTTGAACAGTATATTCTATTAATAGGAAGTCAAGTATTATTAGAATTTAAGTTCTCTAGTGTTAATTATTTTACCAGTGAAGAAGATAGTGAGAATATGATCTAAGTATTGAAATAAGTTGGTTTAAGAGCTGTTTTATTTGAGCACTTTAAAAAATTGAAAAACACTGGTAAAATTATGATGTACTTATTGAAATAACTAGATTTTCGTAAAAAGCTAATAAGTTAAAATGGCTATTTTACAAGT # Right flank : CTGTTTAAGCTATAACTAGTAATGTGTGCTTTGGGTTGAATATTAAAAGAATAGTCTATTAATAGGAACTCAATAAAAATAGTATTATCAAATTTAATATGATCTAGTGTTAATTATTTTACCAGTAAAAAAGATAGTGAAAATGTGATTTGAGTATTGAAATAAGATGGGCTGAGACCTGTTTTGTTTAAGCACTTTAAAAAATTGAAAAACATTGGTAAAATTATAATGTACCTATTGAAATAACTAGATTTTCGTAAAAAGCTAATAAGTTAAAATAGCTATTTTACAATAGTTGAACACTAACATAGAATGTATTTAAATAAATAATTAATTTCTTCCCCTTCATAATCATATTTGTTGAACACTAACATAGAATGTATTTAAACATAGCTGGCATTCTGCTCCAATTTGGTGTTTTAATAGTTGAACATTAACATAGAATGTATTTAAACCTAATAATAAAGCGTTTATAATTTACTTTTAATTCTGTTGAACAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAGAATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 1049103-1049461 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075964.1 Clostridium perfringens strain 346/91 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1049103 29 100.0 36 ............................. TAAATAATTAATTTCTTCCCCTTCATAATCATATTT 1049168 29 100.0 37 ............................. CATAGCTGGCATTCTGCTCCAATTTGGTGTTTTAATA 1049234 29 96.6 37 ........T.................... CCTAATAATAAAGCGTTTATAATTTACTTTTAATTCT 1049300 29 89.7 37 ........A.......AG........... CTTAGACGAGGAAATAAACAATATGGGTAAGGGAGAA 1049366 29 93.1 38 ........A...........T........ ATTTAGTATGATAGAGAAGGTTTAGAATAAACCTTCCC 1049433 29 79.3 0 ......TGT.......AG..A........ | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 93.1 37 GTTGAACACTAACATAGAATGTATTTAAA # Left flank : TGTATTTAAACCAACATGGATTACCAAATGAGCAGGCACATTTTAAGTTGAACATTAACATAGAATGTATTTAAACATGAAGAGGGAGCTTGATAACTACGTTAAAGTTCTTGTTGAACATTAACATAGAATGTATTTAAACTAAGTGTGGTTTATAAGATCCGGTCTTTTCTCTGCTGTTGAACACTAACATAAGATATATTAAACTGTTTAAGCTATAACTAGTAATGTGTGCTTTGGGTTGAATATTAAAAGAATAGTCTATTAATAGGAACTCAATAAAAATAGTATTATCAAATTTAATATGATCTAGTGTTAATTATTTTACCAGTAAAAAAGATAGTGAAAATGTGATTTGAGTATTGAAATAAGATGGGCTGAGACCTGTTTTGTTTAAGCACTTTAAAAAATTGAAAAACATTGGTAAAATTATAATGTACCTATTGAAATAACTAGATTTTCGTAAAAAGCTAATAAGTTAAAATAGCTATTTTACAATA # Right flank : ACTGTTTAAGCTGTAACTTATAATGTGATACTTTGGATTGAATATTAAAAGAATAGTCTATTAATAGGAACTAATAAAAATAGTATTATCAAATTTAATATGATCTAGTGTTAATTATTTTACCAGTAAAAAAGATAGTGAAAATGTGATTTGAGTATTGAAATAAGAGGGGCTGAGGCCTATTTTGTTTAAGCACTTTAAAAAATTAAAAAACACTGGTAAAATTATAATGAACCTGTTGAAATAGCTAGATCTTCGTAAAAAGCTAATAAGTTAAAATGGCTATTTTACAAGTATTGAACAATAACATGATATGTATTTAAACACTCTATATTTAATTAAAGTAGGTGAAGAATCAGTAATTGAACAATAACATGATATGTATTTAAACCTATTATGATTAGATTCCCAATGTGATAAAGTGTAAATTGAACAATAACATGATATGTATTTAAATTTACTTTTAAAATCTACTAATTTTAATCCATATCAGTTGAATA # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACACTAACATAGAATGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 1049757-1050683 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075964.1 Clostridium perfringens strain 346/91 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================ ================== 1049757 29 100.0 37 ............................. ACTCTATATTTAATTAAAGTAGGTGAAGAATCAGTAA 1049823 29 100.0 37 ............................. CTATTATGATTAGATTCCCAATGTGATAAAGTGTAAA 1049889 29 96.6 36 ............................T TTACTTTTAAAATCTACTAATTTTAATCCATATCAG 1049954 29 79.3 80 .....T.G......AG...C........A ACTCAAATATTATTAGAATTTAAGTGCTCTAGTGTTAATTATTTTACCAGTAAAAAAAGATAGTGAGAATATAACCATAG T,AA [1049972,1049979] 1050066 29 100.0 37 ............................. TTTATAGCGTTATCCGCTTGATCCGTAGTATAGACTG 1050132 29 100.0 36 ............................. CCATTACAATCTTTAAAATTTGCATTTCCACAAGTG 1050197 29 100.0 37 ............................. CTTTTAAGATAGCTATATATACAGTGTGCTTCATTAG 1050263 29 93.1 36 ................A...........T AAGAATTTAGGTGGTGGATTTAATCCATTAAGTACA 1050328 29 89.7 36 .......C......A.G............ TTTAATCCTATAGTAGAGTTCTTAGATGAATTTCCG 1050393 29 100.0 37 ............................. ACTGTTTTAACAATTCTCTGCTTATCTTTAACTTTAG 1050459 29 100.0 35 ............................. TCCTTGTTTTTATTATACTCAATGCTTCCATTTCG 1050523 29 93.1 37 ..............A.G............ ACTACAGTATAATCCGCAGCATCTATATCATAATTTG 1050589 29 100.0 37 ............................. CCACCACTTAAACAGTGTCCGCAGTCAATTAATATTG 1050655 29 86.2 0 .......C......A.G...........T | ========== ====== ====== ====== ============================= ================================================================================ ================== 14 29 95.6 40 TTGAACAATAACATGATATGTATTTAAAC # Left flank : TTTAAACCTAATAATAAAGCGTTTATAATTTACTTTTAATTCTGTTGAACAATAACATAAGATGTATTTAAACTTAGACGAGGAAATAAACAATATGGGTAAGGGAGAAGTTGAACAATAACATAGAATTTATTTAAAATTTAGTATGATAGAGAAGGTTTAGAATAAACCTTCCCGTTGAATGTTAACATAAGATATATTTAAACTGTTTAAGCTGTAACTTATAATGTGATACTTTGGATTGAATATTAAAAGAATAGTCTATTAATAGGAACTAATAAAAATAGTATTATCAAATTTAATATGATCTAGTGTTAATTATTTTACCAGTAAAAAAGATAGTGAAAATGTGATTTGAGTATTGAAATAAGAGGGGCTGAGGCCTATTTTGTTTAAGCACTTTAAAAAATTAAAAAACACTGGTAAAATTATAATGAACCTGTTGAAATAGCTAGATCTTCGTAAAAAGCTAATAAGTTAAAATGGCTATTTTACAAGTA # Right flank : TAACATAGCTGCTTTAGATTTTGCAAGATTTTCGATAGTTGAACAGTATATTCTATTAATAGGAGGTCAAGTATTATTAGAATTTAAGTGCTCTAGTGTTAATTATTTTACCAGTGAAGAAGAGATTGAGAATATGATCTAAGTATTGAAATAAGTTGGTTTAAGACCTGTTTTGTTTAAGCACTTTAAAAAATTGAAAAACACTGGTAAAATTATAATGTACCTATTGAAATAACTAGATTTTCGTAAAAAGCTAATAAGTTAAAATGGCTATTTTACAAGTGTTGAACATTAACATAGAATGTATTTAAACTTCTGTGTTTGTTGGATAATGGAAGAATGGCTTCTGCGTTGAACATTAACATAGAATGTATTTAAACAAACTAGTCGTAACATTAGAATTTAAACTTTGTATAGTTGAACATTAACATAGAATGTATTTAAACTCGTATTTGTATGAGATAATTCCTAAACCCATTTGAGGGTTGAACATTAACATA # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACAATAACATGATATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [10-9] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 5 1050966-1051457 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075964.1 Clostridium perfringens strain 346/91 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1050966 30 100.0 37 .............................. TTCTGTGTTTGTTGGATAATGGAAGAATGGCTTCTGC 1051033 30 100.0 36 .............................. AAACTAGTCGTAACATTAGAATTTAAACTTTGTATA 1051099 30 100.0 38 .............................. TCGTATTTGTATGAGATAATTCCTAAACCCATTTGAGG 1051167 30 100.0 35 .............................. TTATTTATCTTTACAAAAAAACCTTGTTCCTTATC 1051232 30 100.0 36 .............................. GCTATTTTATTATTATTTAAAGTATTTATTTTTTAA 1051298 30 90.0 36 ........C.......AG............ TATTTTTTATCTCCTACTAAAATATTTTTTGTGCAA 1051364 30 100.0 33 .............................. TTATCTAATCCTCAAACTTTCATTTTCTTTTAA 1051428 30 80.0 0 ........A......TT...T..C....C. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 96.2 36 GTTGAACATTAACATAGAATGTATTTAAAC # Left flank : ATAACATGATATGTATTTAAACTCCTTGTTTTTATTATACTCAATGCTTCCATTTCGTTGAACAATAACATAAGATGTATTTAAACACTACAGTATAATCCGCAGCATCTATATCATAATTTGTTGAACAATAACATGATATGTATTTAAACCCACCACTTAAACAGTGTCCGCAGTCAATTAATATTGTTGAACACTAACATAAGATGTATTTAAATAACATAGCTGCTTTAGATTTTGCAAGATTTTCGATAGTTGAACAGTATATTCTATTAATAGGAGGTCAAGTATTATTAGAATTTAAGTGCTCTAGTGTTAATTATTTTACCAGTGAAGAAGAGATTGAGAATATGATCTAAGTATTGAAATAAGTTGGTTTAAGACCTGTTTTGTTTAAGCACTTTAAAAAATTGAAAAACACTGGTAAAATTATAATGTACCTATTGAAATAACTAGATTTTCGTAAAAAGCTAATAAGTTAAAATGGCTATTTTACAAGT # Right flank : CCTAAAGACTACGTAAAAAAATATTTTACGTAGTCTTTTATTTTTTATCTTAACAGAGCTTTTTATCTAAAACCTTCTACATTTAATTTCACTTAAATTTAACCTAAGGTTTGTCCCTCTCTTTTTTTAGATTAATTTTTTATAGAAGATTAGTAAGGTTTCTTGGTAAAATAAAGGATTTAAAGTATTATTTTAACAAAATATGAATTTATGGTAAAATATTATTGCGAATAAAAAATAGAAAGGAAGGTGTCGCACCTTGGGGAGTTTAGTTTTATGGGAGTTAGGTAAAAAACAAACATATATTTTTAATAGTAACAAGCTTAAGGATGCCATAGGAGCTTCACTTATTATTAAGGATTTTTCAGAGGATTATTATAATGATCTTTTAAAGGAAGAAAATTTTATAACAAGAGGTGGAGGAAAAACTATTTATTATTTTGAGAGCAAGGATGAGGGGAGGGAGTTCATTAAAAACTTAAGTTTTCATATTTTAAAGA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAGAATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 6 1095463-1100723 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075964.1 Clostridium perfringens strain 346/91 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1095463 29 100.0 37 ............................. AAATTTGATATTATTTTTTGTGCGTTTAATGGGGAAG 1095529 29 100.0 36 ............................. GTTTCGGGGGACAAATTCCTACATGGGGATTTTTGA 1095594 29 100.0 36 ............................. GTTAACGCAGCAGCTACTATTTCTCGCTTGAATAGA 1095659 29 100.0 36 ............................. TTTGACTTATCTTTTCTTTTAGTTGTTTTAATAAGT 1095724 29 100.0 38 ............................. GGTATGTTAAGATTAATTTTTTTAGGATCTACTGCTTG 1095791 29 100.0 35 ............................. TACCTTCAGTAGTTTCTATATCTAAAGCTAATTTA 1095855 29 100.0 37 ............................. TGAACAAAGCCACCATGTTCACCATAATATGTTGACC 1095921 29 100.0 36 ............................. TCTAAGCTTCTTTTCTTAGCTTCAACTAAATCTGCA 1095986 29 100.0 37 ............................. GCAGAAAATTAAGACAACTATTTGGAAGATATGAAGG 1096052 29 100.0 36 ............................. TTATGCGTTGTATATAAATATGCTTGTTTTAAGTAG 1096117 29 100.0 36 ............................. ATCATAGTTCCCATTATTCCAATTCCTATTGGCAAT 1096182 29 100.0 36 ............................. TTAAACACTACTACTTATAATTAACTTAAACTTTAG 1096247 29 100.0 38 ............................. ACATCAGAAGAAATGCAATATGGCATAGAAAACTTAAG 1096314 29 100.0 36 ............................. ATGGTAGAAAATGTAGAAGGTTTTGATTATCCTATA 1096379 29 100.0 37 ............................. TACGAAATGATGAAAATAGTTATCTTGAGTGGAGATT 1096445 29 100.0 37 ............................. TGGTTACGCTAGGATTCAAAGTGCAACAAATCAAAGG 1096511 29 100.0 37 ............................. AAGGTGATAATAAAAATATAGAATTAATAATTAAGCA 1096577 29 100.0 37 ............................. TTTTATCTTTTAACTCATTTATTAAAGAATCCTTTTG 1096643 29 100.0 36 ............................. GCTCCAGAAGATGTACAAGCTTATGCTGATTCTAAG 1096708 29 100.0 28 ............................. ACGAACACGAGTATATCTACCCATAAGT Deletion [1096765] 1096765 29 100.0 36 ............................. AAGTTATTAAGTTCATTAGCTATAGCACTAGCACCA 1096830 29 100.0 36 ............................. TTGTCATGTTGTTTTTTGTGGTCTAACTCTTTTATT 1096895 29 100.0 36 ............................. TTAACAACATTAGGAACAGTAGTAGCAACAGAACTA 1096960 29 100.0 37 ............................. TAACAAGTGGTTTGCGATATGGGTAGAAAGCTTTTTC 1097026 29 100.0 37 ............................. CTAAACTCTTTTAATTTGAGGATAGGAGCTTTCAGAT 1097092 29 100.0 36 ............................. AAATAAAAGAAATACAATAAAGGAATATGAGAAAGA 1097157 29 100.0 37 ............................. TTCTTTAAAAATGATATAAAAAAAGAACTTATTAAGC 1097223 29 100.0 37 ............................. TTTATTTTATCTAGTCTATATTTAAAAGCATTTTCAA 1097289 29 100.0 37 ............................. ATTTAAAATTTGTTGCTGAAGTTTTACTTTATTGTTC 1097355 29 100.0 37 ............................. GAGTATTATTATAAATATTATAGTTATAACAATGCTA 1097421 29 100.0 37 ............................. AAATTATTAGCTGCCCATTTTAATTGAGTATAAGTAG 1097487 29 100.0 37 ............................. TGAGATACATTAAGCCCTTCTCTAACTCTAGGTTGTA 1097553 29 100.0 37 ............................. AGCTTTATTGGAGTATGTATTTAGAATAAGAAAAGGT 1097619 29 100.0 37 ............................. ATTTTTGTCCTAAAGTGTTTCTCACAATTTATCCCCC 1097685 29 100.0 37 ............................. GTAGAAATAGATACTTTAATAGATAAAATTTTAAAAC 1097751 29 100.0 37 ............................. GCAGGTATTGAGACGGCTTTAGCCCACCCCAAACAAA 1097817 29 100.0 36 ............................. AGAGGAGTTAATGCGATGTTAACTGTAAATGCATAA 1097882 29 100.0 36 ............................. TATTGTTTTAGTAGAAAATATAAAGGGTGTTGACTC 1097947 29 100.0 37 ............................. ATTTAGGAAGAGGGGGGTTTGAATGGTATAATGCTGG 1098013 29 100.0 36 ............................. TATTAAAAAAGAAGGTGGATAAATTGGATGAGAAGC 1098078 29 100.0 36 ............................. ATGCAGATGGGAAAATTACAGAGGAAGAAAGAAAAA 1098143 29 100.0 36 ............................. ATAATGCTAGTATTCTTAATCTTGCGGAGCTTAATC 1098208 29 100.0 37 ............................. CAACTTGAAAACTATAATAAAAGATACAATGTTTATT 1098274 29 100.0 36 ............................. TTTTTATTGCCTTTAATTATATAAAAATTTTTTTAA 1098339 29 100.0 36 ............................. CCAAAACAAAGAAATAAATAAGGAATCTTAAAATTA 1098404 29 100.0 37 ............................. CAATAGAACTAAATTGCTTACTATTTATAACAATACC 1098470 29 100.0 36 ............................. TAGTTAATCTATGTGCTTCTTTCATTACTAAACTCA 1098535 29 100.0 37 ............................. GAAGAAGTTGCAATTGGTGCATTAAAGAAAATAACAT 1098601 29 100.0 37 ............................. AGCACAAAATATAGAAATGTAAGCTTATATCATATTG 1098667 29 100.0 37 ............................. TGTTGATATATTGGGGATGAATGTATCAACCTTCGTG 1098733 29 100.0 37 ............................. ATGATTTCAGGTAGTTCTTATATAGATATAGATATAT 1098799 29 100.0 36 ............................. GATTATATATAAAAAGGGTAATCCTATAGAAATAGA 1098864 29 100.0 37 ............................. TTTGAATGCAGGTGGTGGAGTAGGGACAGAAACTTAT 1098930 29 100.0 37 ............................. TTTGAAAATTCCACTGATATAACAAGTCTACTAGCCA 1098996 29 100.0 37 ............................. AGATTATAGAATATTAGGCTATAGAAGTTTTTGGAGC 1099062 29 100.0 35 ............................. TTCTTTCAGTAATAATGTGAAAATATTTAAAGCTA 1099126 29 100.0 36 ............................. CTCTTTAAATGAGCTGTTATAGCTGTGTTAACCATT 1099191 29 100.0 36 ............................. CCATGTGCATTTAAAATACTAATTGTATCCATATTA 1099256 29 100.0 37 ............................. CCATGTTCATCATAAATTTTAAGCATATATTCTGTTG 1099322 29 100.0 36 ............................. AAAGCTTGGTGTTCTCTTTCCACGCTCAATCATGGA 1099387 29 100.0 36 ............................. TTAGAAATATCCCACGGAATACAAAATGGAAAAACT 1099452 29 100.0 36 ............................. TTTCTCTACTCAAAAATAGTATAATGGTTTTAGGGG 1099517 29 100.0 36 ............................. GAAAGATTACCAGTCAGTAGGAGCTATCATTTGTGG 1099582 29 100.0 36 ............................. ATAGTAAACAGCCATTTCAGCACTCTATCATACTTA 1099647 29 100.0 36 ............................. GAATTAAAAGAGCTATTAAGTATATTAAAAAAAGGT 1099712 29 100.0 38 ............................. TTTTGAACCATATACTGAGCTTGAGCTATTTCTTGTGT 1099779 29 100.0 36 ............................. AGAACAATTTTTAACTCAATTAGAAAATAGACTTAA 1099844 29 100.0 36 ............................. GTTGATGAAGGTACTTTGGAGAAGTCTGGTACTTCT 1099909 29 100.0 37 ............................. GTTAAACCTTTCTCGCCTTTAGCTCCAGGTTCGCCTT 1099975 29 100.0 36 ............................. TGGGTTAGAAGGTTTAGATCAGGCTAGTAAAGAAGC 1100040 29 100.0 36 ............................. ATACAAGAATCTGAACTTAAAGTAAGAACAGGAAGG 1100105 29 100.0 38 ............................. TTCATCTTTGCAGTTTGAGTTTTAATCTTATCTTGTTC 1100172 29 100.0 36 ............................. TATTACATGAGATGGTACATTTATATCATAATGTTA 1100237 29 100.0 36 ............................. TCAAAATCAACTGTCCAAGATTTTAAACCCATTATG 1100302 29 100.0 36 ............................. TGAAGCTATAAGGATAAAAGATGTAAGAAGAACTGA 1100367 29 100.0 37 ............................. TATTCATAACAAAGGCATATTTACCTAAGGCAAATGA 1100433 29 100.0 37 ............................. TATTCATAACAAAGGCATATTTACCTAAGGCAAATGA 1100499 29 100.0 36 ............................. TTACTATTTTTAATAACTCCATTTAAAGTTATATCT 1100564 29 96.6 35 .............C............... TAGTTAATCTATGTGCTTCTTTCATTATTAAACTC 1100628 29 100.0 37 ............................. TTGCTTTTTAAGACACACTCTAAATATGTGCCTTCAT 1100694 29 86.2 0 .................GAA....C.... | T [1100721] ========== ====== ====== ====== ============================= ====================================== ================== 81 29 99.8 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : ACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTCAGCATTTTGAAATTTGGGG # Right flank : TATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAACATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATTGACATGATATCTGTACATTTTTACTTAATTATTGATATATACTTATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCTTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //