Array 1 5928-4891 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LFXY01000067.1 Mannheimia haemolytica strain L044A contig00067, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
      5927	    32	  93.8	    36	C....................C..........	CCTATAACGAGCAATGGCATTTTGATCTACGGTAAA 	
      5859	    32	  93.8	    34	C....................C..........	TTCTTGAATACCTCCGGAGTCAGTTAAGATAAGG   	
      5793	    32	  93.8	    36	C....................C..........	CACCGCTGCTACTTCGGTTATCGGAGTAGTTTGCAC 	
      5725	    32	  93.8	    35	C....................C..........	GTGGCACAGTAACACGAGCAGATGCTGATAAACGC  	
      5658	    32	  93.8	    34	C....................C..........	CAGCAGCCGTTGTTACCGTGGTGCAATGCTTGCG   	
      5592	    32	  93.8	    36	C....................C..........	TACACTTATTGCCATAGGGTAGTAGTAATCTTTTAC 	
      5524	    32	  93.8	    34	C....................C..........	TGCGATTTTTGGATTTTTCGGGCGATAAATGATA   	
      5458	    32	  96.9	    34	C...............................	TCGTGGCTGGTTATACAAAGAAAAGCATTGTTGG   	
      5392	    32	 100.0	    35	................................	TTAAATCTAAAGCTAAAGCTATTTTATTAATTAAA  	
      5325	    32	 100.0	    34	................................	TTTACCGTTTACCGATTGGATTTTAATGCTAGAG   	
      5259	    32	 100.0	    35	................................	CCTAAATTGCCGTAAAAATCTGCCATTAGCTACGC  	
      5192	    32	 100.0	    35	................................	CTCATAACGAATCCAATCCTGTTCGGTTAATCCCC  	
      5125	    32	 100.0	    37	................................	AGGGGCGTGTACCGCAATCAATTTTAATTATAACCAA	
      5056	    32	 100.0	    35	................................	TTTATCTGTTGCGGTCAATTGTATATCTTGAATTT  	
      4989	    32	 100.0	    35	................................	CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG  	
      4922	    32	  93.8	     0	..........T............T........	|                                    	
==========	======	======	======	================================	=====================================	==================
        16	    32	  96.7	    35	GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	                                     	       

# Left flank :   TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAATATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTATAGGGA
# Right flank :  GGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAA

# Questionable array : NO	 Score: 8.79
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTACGCGTGGCTGTGAATTGAAAC
# Alternate repeat :   CAGCCACCTACGCGTGGCTGCGAATTGAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-1.30,-1.10] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,9.78   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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