Array 1 23144-22976 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWNO01000029.1 Neisseria meningitidis strain Nm420815 Scaffold29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23143 36 100.0 30 .................................... CCAAAACAATTACTGATGATGTAACGGTCA 23077 36 100.0 30 .................................... TTTTCATCGTAACATAGTTGCTTGCGCCAA 23011 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : TGCTAAGTTAAATTGAGGACACGCCCTAAGCTGGATAAACA # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 1118-2011 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWNO01000083.1 Neisseria meningitidis strain Nm420815 Scaffold83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1118 36 100.0 30 .................................... TCCCCCCCTTCATCATCGCACCGACCTGCC 1184 36 100.0 30 .................................... AAAAACTTTTTAGGGGGTCGGAAAAAATGA 1250 36 100.0 30 .................................... GTTTCTGAAATATCACAGCCCCACCCGACG 1316 36 100.0 30 .................................... TAAATGCGGTTTATATTGCTAGGGTGCATA 1382 36 100.0 30 .................................... ATGCTTCTTCAACAGTAGATTCTGCATCGG 1448 36 100.0 30 .................................... TAAAAACGTGGGGTAAATTCGAAAGTACCA 1514 36 100.0 30 .................................... TAATATCTGTTACTTGTTGTTTTGTTAAGT 1580 36 100.0 30 .................................... CATATCAACAAGCAAGTCATCTCCACTAGA 1646 36 100.0 30 .................................... CGAATATATCAAGTTGGCTCGGGTGCTGCG 1712 36 100.0 30 .................................... GTTTCTGAAATATCACAGCACCACCCTGCA 1778 36 100.0 30 .................................... GTTACAATGTTTGTGCAGCAATAACGCACC 1844 36 100.0 30 .................................... GGTATAAATGCGGTTAATGTTGCTAGGGTG 1910 36 100.0 30 .................................... AACCCACGGCGGCACGCGCGAGGCGGTTTT 1976 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : CTCATTTCGCAGTGCTACAATTATCATGATGAGCATATTTATGAAGAGGTAGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATTATCATGATGAGCATATTTATGAAGAGGTAGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATCTGGAAGACTGGTAAGAAACGAGATGCACAGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGCTCCCATTCTCATTTCGCAGTGCTACAATAGATTGCTTCACAAGCCAAGCGTTCGTCTC # Right flank : TTTAATGAATTTACTAGGGCGTGTCCCTAATTTGAATAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //