Array 1 1127257-1128140 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026090.2 Ralstonia solanacearum strain IBSBF 2570 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1127257 29 96.6 32 ....................A........ CCTCTACCAGAGAGGGAACCCTATTTTTGATG 1127318 29 96.6 32 ....................A........ GGCGCGGGCTCAATCACGGATTTGGTGGACAA 1127379 29 96.6 32 ....................A........ CATTGTGCTGGATATCGATAGCCCTGGCGGAT 1127440 29 96.6 32 ....................A........ GCAAATCCCGCTGTCGGCCAGCTCCGGGCGGC 1127501 29 96.6 32 ....................A........ GTAAAAAACAGTCATACCTCGCTGTCTCCCTT 1127562 29 100.0 32 ............................. TTGACCGACGCGGCGTAGCCCAGCACGAACGC 1127623 29 100.0 32 ............................. GCAACTACGTGGTTATCCGCGCCGGCGAGAAA 1127684 29 100.0 32 ............................. GTGATCACGAATCTGCCGCTGTTGCTGGATGC 1127745 29 100.0 32 ............................. CGCTTTGCGTGAGGAGTGTTCTCCCAAATGGT 1127806 29 100.0 32 ............................. CAGCCGCACAACCTGGCAGCATTCCGGTACGC 1127867 29 100.0 32 ............................. AAAGAGCGCGGTCCGTGCAAAACCATATCGAA 1127928 29 100.0 32 ............................. CGCGTGACGTGGCTCGGCGAGTACACGCAGAT 1127989 29 100.0 33 ............................. TGGGCGCTGTACCAGATCGGCCAATACTGCGAC 1128051 29 100.0 32 ............................. CAGGCAGTTGACACGACGAGCAGACGCGCTGC 1128112 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.6 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAGTACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGGCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCGTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACGATCGTGCAGTACCTGCAGTTCGCACGCGACTTCAACAAGCTGTTCCCGGGCTTCGAGACCGATATCCACGGGCTGGTCGAGGAGGAGATCGACGGCAAGGTGGGGTACTTCGTCGACTGCGTGCGGTAAGGCATTGCCGCGAGCTTTTGCCCGGCGGTAGATCGGTAGATTTTTGAGGGCCGATTTTTTGCTTTTGGATCAAGGGCTTGCGGTAAGT # Right flank : GTCCTCGGCGGTGAAGTTCTGGTAGTGGTAGAGGTGTTCCCCGCGTGGGCTCATTTGGATAGTCTTTATATTTGCTGAAGCTGTCAGGAAAATCCAAAATAAATGTCCACCGGGCTGTTACGATCGTCCGTCGGGGAGCAGGCACAGATAGACATTTCCTGACATCAAGAAAAGGCATCCGGCTGACATGGAAAAAGGGGCGGCGCAATACTTTGCCTATTGGGGCAAGGCACGCATGCAGGAAGGTACCAGTCAGCTTTATCACCTCCTTGTCTTTCATGCATTGGATGTCGCAGCTTGCGGCGCGGAGTTGCTGCGCCTGCCCCGGTTTTCTCTTGCGCCCCTGGCTGCGGAACTCGGTTGGCCATTGCGGGTTGTCGAAAAGATATTCATCTGGTTTCTGGCGCTGCACGATCTTGGCAAGTTTGCACGCGCTTTTCAAAATCTGGCGCCGGGGTTATCGCCCGATCTCGTCTCTCCTGATCCGAAAAAACAGTATT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : GTGTTCCCCGCGTGGGCGGGAATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1137481-1139891 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026090.2 Ralstonia solanacearum strain IBSBF 2570 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1137481 29 100.0 32 ............................. TGTTTATCATCATAGATAGATACTATTAATGA 1137542 29 100.0 32 ............................. TCTCTCTCCAGAGACTGGAATGGCAATCAGCC 1137603 29 100.0 32 ............................. CGCCACAAGCGCGCCATGAAATGAACGACGAC 1137664 29 100.0 32 ............................. GATCCAGAGGGTTTTCGTCGGCAGCACCAGGC 1137725 29 100.0 32 ............................. TTGGCAGTCCGCTGGCTGTCGCCATCCTTGCC 1137786 29 100.0 32 ............................. CTCAGATGTTCGACGCGCACGGTGGCGTCGTA 1137847 29 100.0 32 ............................. TAGCAACTCGAGTGGTTCGACCCTCGACAGAA 1137908 29 100.0 32 ............................. CTGCTCGGTTTCGACAAAGCGGTCGTCGAGAT 1137969 29 100.0 32 ............................. CTCGGGACGGGGACATTGGACGTCGTCATGCG 1138030 29 100.0 33 ............................. CGCGTGATCCTCAATCCGGCCGGTCAGCATCAC 1138092 29 100.0 32 ............................. GTCTCGGGCCCGTGGAAGTGGCTCGATACCTA 1138153 29 100.0 32 ............................. CCTCGTGGATGGCCGTATGAATCATAAATAAT 1138214 29 100.0 32 ............................. TCGTAGCCATACGCGCCGCCGAATCCGATGAG 1138275 29 100.0 32 ............................. GAGGTTAAAATGATTTTGTTTGGCGAAATTGT 1138336 29 100.0 32 ............................. CGATTCTCCTACCCAAAATTGGGTATGGTCTC 1138397 29 100.0 32 ............................. CCGCGTGTGCCCGCTCTCTTATCCCAGTGCAG 1138458 29 100.0 32 ............................. AGTTCTTCCAATTCAACACGCCGCTGTCCTCG 1138519 29 100.0 32 ............................. ACCTTGTATTTATTAGGTTTGGTGAAAGAGTG 1138580 29 100.0 32 ............................. CAGGTTGTGAACTAATCAGGCAAAGGGGGCAT 1138641 29 100.0 32 ............................. CTTCGGCATGACGACAGACATTTTGTCCAGCA 1138702 29 100.0 32 ............................. TTCAGGCGCTTTTCATTGACGGTGGAGCTGTC 1138763 29 100.0 32 ............................. GAGGCTGGCCCACCTCTGCTTAGGCGTATGTC 1138824 29 100.0 32 ............................. TTGCCGAAGGCGAACACGTTCGACACGTCCGT 1138885 29 100.0 32 ............................. CAACTGAACAGCACTTACCTGTTCGGCGTGCA 1138946 29 100.0 32 ............................. CGAATAACGCCGCCGCCCTCTGGCGTTGATAC 1139007 29 100.0 33 ............................. GTGACCTATCAGCGCAACACCGGCTACCGCGTC 1139069 29 100.0 32 ............................. ACATCGTGCCTTTTCTGCAGCCGAGGATTCCC 1139130 29 100.0 32 ............................. ACAATAAACCTGGGGCCAGTGTCTTTCGCTTT 1139191 29 100.0 32 ............................. TTTGTGCCGCAGCCAGGCAGCAGACCGAGCCG 1139252 29 100.0 32 ............................. AGAGCGGCGATGGTAACTTTGAAATGAGAGGT 1139313 29 100.0 32 ............................. GCGTCCAGTGGGTCGCCGGATTGTGGACTGCT 1139374 29 100.0 32 ............................. GGGATTCCCAATTATTTATTCCATGGATGAGA 1139435 29 100.0 32 ............................. CATGGTTCTCATTGAATCCCTGGTGTATTCAG 1139496 29 100.0 32 ............................. AGGTGGACAATGATCTCGAAAAACGCAGCATG 1139557 29 100.0 32 ............................. ATCGCGCTTGGCATGGCCATGCTCATCGCATC 1139618 29 100.0 32 ............................. TCGATGCGGTTTGAATGACGCGCGCGCCGTCA 1139679 29 100.0 32 ............................. CCCGTCGCCTCAATCGGCCAGGGTCCATACTC 1139740 29 96.6 32 .......T..................... ATGAGCGGGTTACCCGTCGCGGCGGCTTTTAT 1139801 29 79.3 32 ........T...TAC.........C..T. CCCGGCGCCGGCGGGCTGAGCGGTGTGAGCCT 1139862 29 86.2 0 ...........A.A..........CT... | C [1139867] ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.1 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : TCGCATCATCCCGGCCATCGAGGAGGCGCTTGCGGCGGGCGGGATCTCGCCCCCGGACGCCCCCCCGGAATCCGTGCCGCCCGCCATTCCCAATGCCGAGGGCCTTGGCGACGCTGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGTTGCTGGAGGTGCGCGCCGGTGTATACATCGGCGATGTCTCCCGGCGCACGCGTGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTACGAATTCCAGACACTGGGCGCCAACCGCCGCCTTCCAGTCGAATTCGACGGACTGCAGCTCGTGGCCTTTCAGCCGGCGGATAAACCTGCTCTTTGACAACGCGAATAATCGGTACGTTTTGGGTGGCGGGATTTTTGGTTATTAATCAATGGGTTGTGTTAAGT # Right flank : GCTAGTGGCCATCCAGCCGATGTCACGACCCGGATGCCGCTAAACGCCAGTGCCGGCTTGACCGCGCCTTCCAGCCGTTCCTGCACAGAGGCAAGGACACAGCGCGTCCGGGCCGCAGGGCTGGATCAGTCCGCCAGCGCAGCGCGCGCAGCGCCAATCGCCAGCTTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGATGCCACCGAGCCCTCCAGCGTCAGCACGGCGTGCACGTCGTCGCTGATCAGGTCCGCCTTGTCGCCCAGGCCGCTGATTTCGCGCAGCTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATGTCGGCGAAGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //