Array 1 10811-10110 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUJY01000127.1 Pseudomonas sp. PIC25 Contig_000127, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10810 29 100.0 32 ............................. ACACTTAATGTAATTTCTCAAGCTATTTAACG 10749 29 100.0 32 ............................. CTATCTCGTCTGTGTCTAACCTAGATCATTGA 10688 29 100.0 32 ............................. GTAAGCGGAATATTTGGCAGAGTAAGGAGGAT 10627 29 100.0 33 ............................. CAGGGCAACGACAACAAGATCGACGGCGCCGTG 10565 29 100.0 32 ............................. AAGGATGGGTACTGGCAGGCATTCTGCATCGA 10504 29 100.0 32 ............................. CAGGCGAAGCGCTTTGGTGCGGTGCAGACCGG 10443 29 100.0 32 ............................. GATACTCAGCCAATGAAGCGCTACCTGAGAGC 10382 29 100.0 32 ............................. CGCAGAGCGGTGACGTTCTGCACCCTGCTGAA 10321 29 100.0 32 ............................. CAGATTGTTGGGTTCGGGGTTCGGTACGGGCG 10260 29 100.0 32 ............................. GCCTCCAATCTCAGCCTCGACCAGACCCTGGC 10199 29 100.0 32 ............................. TCCGGCAACGCCGGTTTCGACTTCTGGCTCTC 10138 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGGGTGCGGGGATGAACCG # Left flank : GCTGGCGCGGATCATTCCCACCATCGAAGAGGTCTTGGCCGCAGGCGGCATTTCTCCACCGGAGGCGCCGCCCGAGTCGGTACCGCCGGCCATTCCCAACCCCGAAAGCATCGGCGACGCCGGCCACAGGACGCAGTGATGAGTTTCGTCGTGGTCGTGACGGAAAACGTGCCGCCGCGTCTGCGTGGCCGCATGGCTATCTGGCTGCTCGAAGTACGGGCCGGTGTCTACATCGGCGACGTTTCCAAGCGCACGCGGGAAATGCTCTGGGAGCAACTGAAAGAGGGCTATGAGGATGGCAGTGTCGTCATGGCCTGGGCCAGCCAGCATGAGTCCGGCTACGAGTTCCAGACCCTCGGCCCCAACCGCCGCCTGCCTGTGGAGTTCGATGGTTTGCACTTGGTGGCCTTCCATCCTGTCGAGTGACATTTCCCAGCCATTTTTTCGGTAGATTTTTCTGGCGGTTTTTTATCCTTATAGAACAAGGAGTTACTGGAAGT # Right flank : TGAGGGATCATCGAAATCGGCCACGGCACCATATACTCCCCGCAGGCGCGGGGGTGCGTTTGCTGGCCCGACGTACGCTGGCCAGTCGAGCCCAAGGAGGCATTCATATTAGATTTTGCCCCCGCACCGATTTCGCCCTAAGGTGGCGCTATGAATACCGATCCACTGCTCAAACACCTGCGAAAACGGCTGCCCGATCTGCTGGCGGTCTATCTGTTCGGCAGTCAGGCCACGGGGATGGCGACGGCGGGCAGCGATGTCGATCTGGCTGTGTTGGCCCCCGGTCGGGTCGATCCATTGCGTTTATTCGAGATCGCCGGTGAGTTGGCCGATCTGGCAGGGGCGTCGGTGGATTTGCTCGATCTGCGGGCGGCGTCCACGGTGATGCAGTACCAAGTGATCGTGACTGGCCAGCGACTGTGGGCGGTGGATGCTCGGGTCGGGGTATTCGAGAGTTTTATCCTCAGCGAAAAAACGGCCTTGGACAGCGCCCGAAGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19719-19446 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUJY01000127.1 Pseudomonas sp. PIC25 Contig_000127, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19718 29 100.0 32 ............................. TGATGGTTCCCATGACGGCGATCTCACCAGTG 19657 29 100.0 32 ............................. CAGGCCTGGCAGAAGCTGTACCGGCCCGGGTA 19596 29 100.0 32 ............................. ATTTTGTATTAACTGGTGCTGCTGGTACTGGT 19535 29 96.6 32 .............A............... TCCGTACGGTTCTTCCCCCTTGCTCTGGCAGC 19474 29 75.9 0 ...........ACCC.........CC..C | ========== ====== ====== ====== ============================= ================================ ================== 5 29 94.5 32 GTGTTCCCCGCGGGTGCGGGGATGAACCG # Left flank : | # Right flank : AAATTGCGAAACGCCTCAAGCTATTCACAGGTCGCGCTGCAAGCGCGTCGAGATGAACTACGCTGCGTTACGTGGTCGCATCCTCGGGATAAGGGCTTTACCCTTCTGGAAATAGGGGTATAGCATGTGGCCATCTTCTGCTTCGCCCCATCAATGGACTCGCTGAGGGAAGGGATTCGTTCGCATGGCTGCGTTGTTTTCGGAACTGGATGTTCGTGCCCGGCGCTTCTGGGCAAAGAGCGGTGAGGCGGCCGGCCATGGCGTGCTGGCGCATATGCTGGACGTGGCGGCGGTGGCCGAGGTGCTGCTCGAACACGAGCCTGAGCGGTCTCGCCAGTGGGCGGCCCAGGCATTCGGACTCCCCGAGGCGGAGGCCGTGCGCTGGCTGGCGGCCCTGGTTGGGTTGCACGACTTCGGCAAGGCTATTCCCGGGTTCCAGAGCAAGTGGCCGCAGGGGCAACTGGATGACGAGGCCGTGGGGCTGTCGTTCAGCGAGCGGT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //