Array 1 3219-140 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBZC01000081.1 Alkaliphilus pronyensis strain LacV Alk_LacV_TTCAGC_MERGED.PERFECT_contig_81, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 3218 32 100.0 33 ................................ TTGCTATTTTCCCATTTATAGGCTGTATATGCC 3153 32 100.0 32 ................................ TTCATCTGCTGTGCTATCACTTAACACTGTTA 3089 32 100.0 32 ................................ TCGCAACTTGCCTAGACAGAATACGCACAGTA 3025 32 100.0 34 ................................ ATAAAAGTAGATAAAGATGACCTAGAGCTAGAAT 2959 32 100.0 32 ................................ ATTGAGAGCATAGCAGTATCACTGCAAATTTT 2895 32 100.0 32 ................................ ACAGAGAATTAGTGAGATTAGGTGTTAATGTT 2831 32 100.0 34 ................................ TTCCTGTGAAAGAATGATATTGGAGTTGTTTAAA 2765 32 100.0 33 ................................ TTCCATGGAATCACCAAATGGGGAATCATCATC 2700 32 100.0 32 ................................ TGTATCAATAAGAGCTCCTTTAACAGTATTGG 2636 32 100.0 33 ................................ TATCCATTTCTGCTTCAATACCATGCCTGTTTT 2571 32 100.0 33 ................................ CTCCAGCCAAAGTAATACCAGCAGTAGCTGTCA 2506 32 100.0 32 ................................ CATACAAATGTAAAGGCATTAGCCAAGGCTAA 2442 32 100.0 33 ................................ TTAGAAAGAAAACTGAGAATACAGATGACAACT 2377 32 100.0 33 ................................ ACTGAATGCTACATTTAATTATTCAGCAATTTA 2312 32 100.0 33 ................................ AGATATTCCAGCAGGTGAGTACAAAGTACTTGC 2247 32 100.0 33 ................................ ATAAAGATAAACCTTAGTAAACAGACCAACGAA 2182 32 100.0 34 ................................ TTGTATTGGCTCTGTGCTATGCTTAAAGATCAGT 2116 32 100.0 33 ................................ TTGAAATCTACATCAGCCCACTGCAAGCCTAAA 2051 32 100.0 33 ................................ AAATTCTCTGTCAACGCTGTCGAAGAGTGCGGT 1986 32 100.0 34 ................................ ATAAAGATAAAATGGTAACATTGGAGGCGATAGT 1920 32 100.0 33 ................................ ACATAGTCCTTGACTACGTTCTAGTACCTTTTG 1855 32 100.0 33 ................................ AGCATTGGCTTGATTGGTTGCATTCGCTTTGTT 1790 32 100.0 32 ................................ ACTCCTGCTAATGTTAATTTTAATTTTAACCA 1726 32 100.0 34 ................................ TCTCTACTGCTCCTGCTATATACCCCTGCTCTAG 1660 32 100.0 32 ................................ TTCTCCAAACAGTGCGATTGACATTTTCTTTA 1596 32 100.0 33 ................................ TTCGTGGCTATATCCTAAATTCAAATACTTTTG 1531 32 100.0 32 ................................ TTTTAAGTTGTACCAACCTTGTACTCTATCGT 1467 32 96.9 33 ................A............... TGCTAATAATGAGGAACAATCTACTGACTATGA 1402 32 100.0 33 ................................ ACCCCTTTTTTTTCTTTAGTCATGTATACTTCT 1337 32 100.0 35 ................................ CTGGCAGAGAGTCAAGCCTGTCTTGGTATGCAGGG 1270 32 100.0 33 ................................ ATTACTTCTTTTTGGCTCATATTGTCAACTTGC 1205 32 100.0 33 ................................ TAACGGTAAACAAGTATAGTTATCGCATGTATC 1140 32 100.0 32 ................................ AAAAGCTAATGAAAAGGCTATAGAAAAATTAG 1076 32 100.0 33 ................................ TTTTTCGGCTTCTTCCTCTGGAATTTCCTCTGG 1011 32 100.0 32 ................................ TTATGAATGAAAGGTAGTACGCATAATAGAAT 947 32 100.0 33 ................................ ATAAAGATAAAATGGTAACATTGGAGGCGATAG 882 32 100.0 32 ................................ GTAAATTGTTACTCATAATTAATATTATAAGT 818 32 100.0 33 ................................ TTCTTCTTGCATCCTTATTATCGATTCCTATTT 753 32 100.0 32 ................................ TATTCCTAATCTAGTAACAAACTATTAATAAA 689 32 100.0 33 ................................ ATAAACCTGAACATTATAGAAGAGGTTATGTAA 624 32 100.0 34 ................................ TTTAATATTCTGTGGTTTGTAGTAGATTCACTAT 558 32 100.0 33 ................................ CTATAAGTTTATGATTATAATAAAATACATCAT 493 32 100.0 33 ................................ TATATACAGACTTAATAATAATTCAATTGTTTT 428 32 100.0 32 ................................ ATTGTGTAAAGTGGTAATGGTCAGTGGCATAA 364 32 100.0 32 ................................ ACCGTTGGTTGCACCTGTGATAGTGATATTTA 300 32 100.0 33 ................................ GTTATAATACGAACATTTTATCCATTTTTAAAT 235 32 100.0 32 ................................ CAAGCTTAAGGATTAAATCCTTGTAGAACAAT 171 32 96.9 0 ..............................G. | ========== ====== ====== ====== ================================ =================================== ================== 48 32 99.9 33 GTCGCCCCTTACATAGGGGCGTGGATTGAAAT # Left flank : ATATAGATGGTTATCCTACGTTTTTAATGAGGTGATATCTAATGATGGTGGTTGTATCCTATGATGTTGCAACAAGTAGTTTAGGTGGAGCAAGAAGATTAAGAAAGGTAGCAAAGCAATGTGTTAACTATGGACAAAGAGTCCAAAACTCAGTATTTGAATGCGTTGTAGATCCAAAGCAATTTGAGCAACTAAAGCACTCACTATTATCTATTGTTGACTTAGAAAAGGATAGTATTAGATTTTATTTTCTAGGCTCTAGCTGGAAAAATAGGGTTGAGCATCATGGAATCAAGCAAATAGTAGATGTAGAGAATCCTATTATTTTATAATACGCGAAGCGTATGTGAACATGGATTGTATACAGGTTCGCACATGTTGCGTTTATTACATTTAACTTGGTAACTTATTAGTTCTTTACTTAAGGTGACTTAACATAATTAGTACTTCGCGAATAAGATATGTGTAGATGTTGAAAATACATTATCATAAGCGAAGCT # Right flank : TCCTATTACGGTAGTGTTAAGTAACTTATGAAAATGTAAGGCTGATACTAGTGATAAGGAAAATCCACCATATAAAGAAGATAAAGATGAGATTACCGCATTTATTCCACGGTCCTCTTGACAACGAGCCTCTCATTGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTTACATAGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //