Array 1 42164-41911 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWU010000010.1 Streptococcus thermophilus strain CF12_14 NODE_10_length_64983_cov_205.126648, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 42163 30 100.0 42 .............................. GGAAACGCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 42091 30 100.0 46 .............................. GGAAACTCAAAATATGTTATTACCTTGTATTTCATAATTCAATTAA 42015 30 96.7 45 ........................A..... GGAAACCCACTTGCTGTGTACATCCTACCAGTTCCGCCTATGATG 41940 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 4 30 99.2 45 GATATAAACCTAATTACCTCGAGAGGGGAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCAACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGACTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TTTTTTGAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGACGACATCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 263682-265103 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWU010000001.1 Streptococcus thermophilus strain CF12_14 NODE_1_length_313755_cov_224.997016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 263682 36 100.0 30 .................................... TTTCATTGAAAACTACAAGGATATTAATCT 263748 36 100.0 30 .................................... CATCATGTCGCTTGTGAAAGTTGTTTTTAA 263814 36 100.0 30 .................................... GAATGCATCCCATGTTTTAGCTCTAGCTTT 263880 36 100.0 30 .................................... AAAACCAAGTCGAGGCTGGTGGCTTGGTAA 263946 36 100.0 30 .................................... GTTCGTCTTTAAGAGCTTGAAAGGCTGCTA 264012 36 100.0 30 .................................... CTATTTGCAGACAAAGAATTCAGTAAATCA 264078 36 100.0 30 .................................... CGATGGAAATGATGGATTGCCTGGCAAAGA 264144 36 100.0 30 .................................... AATATGTTCAAGGTGCTAGAACCGAAAACA 264210 36 100.0 30 .................................... AGACGTCCATTTTGCTATCTAGTTCAGGTA 264276 36 100.0 30 .................................... AACGGTTAAATGGCATCTAACATTTAACTC 264342 36 100.0 30 .................................... ATTAGATGCTATTATCACCGATGTTAAAAT 264408 36 100.0 30 .................................... AGTTAAAGCTGATGCAGGTGTATTGACTGG 264474 36 100.0 30 .................................... ACCAGTCCACAATATATTAATTGAATTTGA 264540 36 100.0 30 .................................... AACGGTTAATTTCGATATTCCAAAGAGTTA 264606 36 100.0 30 .................................... TCTGCCGCCCCGGGAAACCCAAGTGGTCAG 264672 36 100.0 30 .................................... CAAACCATAACACTGACGACAATTCCAAGA 264738 36 100.0 30 .................................... TAGAGGTAATGACGGACTACCAGGTAAGGA 264804 36 100.0 30 .................................... AGTTGTGACTTCGCTTTCGCTTGGCATCCG 264870 36 100.0 30 .................................... TTTCCAATGCCGTGATGGTTTTCGTCAGGA 264936 36 100.0 30 .................................... CAAGGTATACGGCATCCCTGATAACGTAGT 265002 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 265068 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 51175-48566 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWU010000002.1 Streptococcus thermophilus strain CF12_14 NODE_2_length_174852_cov_212.740396, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 51174 36 100.0 30 .................................... TTTGAGGGAATCAACATCACTGTATTCTGT 51108 36 100.0 30 .................................... TTCCGTACAGAATTAAACCGAGATGGTACT 51042 36 100.0 30 .................................... AAACATCATGGTCAGCCTCTGGTACTTCAA 50976 36 100.0 30 .................................... TCCCGGCGTATATACTGGCTCGATTGTTTC 50910 36 100.0 30 .................................... GAAAGATCACAAAAAAGAACTTTCATCTAT 50844 36 100.0 30 .................................... CATTACGCCAAGGTGGTGGTTATTGTGAGT 50778 36 100.0 30 .................................... GATGCTATGAGGGACGGTGTCGATAAATTC 50712 36 100.0 30 .................................... TCTACTTATTATGTAAAATTGAGACGAGCT 50646 36 100.0 29 .................................... ATGTAACTCGTGAGAAACACTACTCAAAG 50581 36 100.0 30 .................................... TAATGTATATTTCTCAAGGTGTGATTCATA 50515 36 100.0 30 .................................... CAAAACCCACAAGATTATCGATGGTCTAAG 50449 36 100.0 30 .................................... TTGTCAATACCGACAGCCATACCTTGGCCG 50383 36 100.0 30 .................................... TATATTAAGCTGACTGGACCAAATGCTTTT 50317 36 100.0 30 .................................... TAGTTCGTAGTTAGTACAGTAGGTTTCTAC 50251 36 100.0 30 .................................... TTAGTTTCGACATTCCAACGGATTCGAGCG 50185 36 100.0 30 .................................... GAGCAAGCTGAAGGTAGCTTCACAATCCTT 50119 36 100.0 30 .................................... AGAAAGAAAGGAAGTAAATGATATGGCATA 50053 36 100.0 30 .................................... ATTCATCCATCATTTTCTGTTCATGCTCTT 49987 36 100.0 30 .................................... ATGATTTAAACAAAGATGACGTTTTATATA 49921 36 100.0 30 .................................... CTTACCACGTTTTCTATGTTTCTCAACTTG 49855 36 100.0 30 .................................... ATTCCTTTTGCAGTGTTCCAAACAGCCATA 49789 36 100.0 30 .................................... TTAACAAGATTGAACTTAAAAAGGAAACAG 49723 36 100.0 30 .................................... GTTCCAACTCCCAATAAGAAAGCAGGTACT 49657 36 100.0 30 .................................... AAGAAGGTCCATATTGACGACGGTGAAGCT 49591 36 100.0 30 .................................... TGTTCGTTAGTAGTTCCAAGTCCTGTCTTC 49525 36 100.0 30 .................................... TGAATAGCAAAGAAAAGTGAGGCTTTATGA 49459 36 100.0 30 .................................... CGTGCACCGTTGACAAGTGTCAAATTATCG 49393 36 100.0 30 .................................... GTATGTGTAGCATCACCTATTTTTCTATCA 49327 36 100.0 30 .................................... AAAAAGGCTGGCGCAAAAAAATACATATTG 49261 36 100.0 30 .................................... TCAATTTTAAATTCAGATTTTGAAGAAGCA 49195 36 100.0 30 .................................... ATCAAGGAATGTAGCAGCATTTTTGACATG 49129 36 100.0 30 .................................... AATCTCTTAGGGGTTCAGGAAGTGAAAACC 49063 36 100.0 30 .................................... ATCCTTGTGTTCTTTCATTGTTGTATACCG 48997 36 100.0 30 .................................... AGTTTGTGGCTGAGTGGATAAAAAAATATA 48931 36 100.0 30 .................................... GTTCAAAATCGCAACATTTTTAGCACCTTC 48865 36 100.0 30 .................................... AATCGCTAAAGAAGCAGTTAAAACTTTCGG 48799 36 100.0 30 .................................... AATACGATTCATTGCAAGAATATGTAAACG 48733 36 100.0 30 .................................... CGTACGGGTCGTGATTGGAACATGCCTACT 48667 36 100.0 30 .................................... GGGCAATGATCGGTAAAGGTTTGGCTGATG 48601 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 40 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //