Array 1 94633-96490 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHGM01000025.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N45411 N45411_contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94633 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 94694 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 94755 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 94816 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 94877 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 94938 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 94999 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 95060 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 95121 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 95182 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 95243 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 95304 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 95365 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 95426 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 95487 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 95548 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 95609 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 95670 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 95731 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 95792 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 95853 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 95914 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 95975 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 96036 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 96097 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 96158 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 96219 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 96280 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 96341 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 96402 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 96463 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113172-114911 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHGM01000025.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N45411 N45411_contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 113172 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 113233 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 113294 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 113355 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 113416 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 113477 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 113538 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 113599 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 113660 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 113721 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 113782 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 113843 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 113904 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 113965 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 114026 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 114087 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 114148 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 114209 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 114271 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 114333 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 114394 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 114455 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 114516 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 114577 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 114638 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 114699 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 114760 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 114821 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 114882 29 100.0 0 ............................. | A [114909] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //