Array 1 42073-39556 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUMX01000014.1 Lactobacillus porci strain Bifido-178-WT-2B seq14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================== ================== 42072 36 100.0 30 .................................... TGCAACTGGTCGCTTTGTGCGGCCACTTTT 42006 36 100.0 30 .................................... ATTTCCGGATCGTACATGATGGGGGAAGAG 41940 36 100.0 30 .................................... TGGTGATCGGTCATTTTCTTCTATCCTTCC 41874 36 100.0 30 .................................... AACCAAGCGGCACCCGTTGGCACACCGTTC 41808 36 100.0 30 .................................... AATCCGAAGTCCAAGCTTTACAGACACACG 41742 36 100.0 30 .................................... AAAGAGCATGACGACGTAATGGACGCTGTT 41676 36 100.0 30 .................................... CGCATATCCTTCAGCGTCAATGGTTCACGT 41610 36 100.0 31 .................................... AATGGCCGCTTGTGTAGCACTGCCAGTCTTG 41543 36 100.0 31 .................................... CGTGTCTGATGGCAAAGGCGGTCTCACGGTT 41476 36 100.0 30 .................................... CTGTAATTGGCTGATCTGCACGGATTGGCT 41410 36 100.0 30 .................................... ATGGCCCTATGTGAGTTTGCGGACCGGTTT 41344 36 100.0 30 .................................... TTTTCACCTGTCCCGTTGGTCCAAACGGTC 41278 36 100.0 30 .................................... GCAGATAGCAGATGAATGCTAGCAGATAGC 41212 36 100.0 30 .................................... GTCCAGTCCTGCCCGAAAGCTTCGCTTTCA 41146 36 100.0 30 .................................... GGCCAGTCAAATTGCCCTTGCTGTCGAAGC 41080 36 100.0 30 .................................... AGGACCCGCTCAGCTTACTTAGTTATCGTT 41014 36 100.0 30 .................................... AAGGAAGACGACCACACGGTTGACGCGTTT 40948 36 100.0 30 .................................... AGACAAGCGCTTGAACACACTGCGGCAAGA 40882 36 100.0 30 .................................... GTTTTGCTGTTCTTATTGGCCAGGTCTTGG 40816 36 100.0 30 .................................... TACGGCCCTCAACGGCACCAGTCATAGACA 40750 36 100.0 30 .................................... TTCGCCAACACGGCTTCCATCACAAAACCA 40684 36 100.0 30 .................................... TTAAAAGAGTAATAACAAAGGCTTGCTATT 40618 36 100.0 30 .................................... GAAGGCGCTTTGGACAATCAGTATTACTCG 40552 36 100.0 30 .................................... CAAGCCATTGCAAGCTCCCCGATGCCTGAG 40486 36 100.0 30 .................................... GCGAACTGGGCGTAAGCTCCCAGATCCATA 40420 36 100.0 30 .................................... TCATCGGTGGTCAGGCCGCCGTGCGCTACG 40354 36 100.0 30 .................................... AACAGTCTCTTGTAGTTCTGCATCCACGAA 40288 36 100.0 30 .................................... GGAGTCGACGACATTTGCAAAGGCACTTGA 40222 36 100.0 30 .................................... TGGTGTTGAGTTCAAAAAGATCTTCCCGTT 40156 36 100.0 30 .................................... ACTGCTCGTGTTACTGTTTACATGCGGATT 40090 36 100.0 30 .................................... TTAACCCACATTTCGCCGTGGATTTCGTCG 40024 36 100.0 30 .................................... AGTCCATCTTGTCATCTGAGCTGATCAGGT 39958 36 100.0 31 .................................... TGAAATTGTTAAAAAGATTGCCCAGCCCAAA 39891 36 100.0 30 .................................... AGACTAAGGAGGCTACTAATGGCAAGTAAG 39825 36 100.0 30 .................................... GTCCCCGTCAGCGCACTGACAAAGCTTGCA 39759 36 97.2 30 ............G....................... CTTCTTCTTTGCCTACCAGAGCTGGGATGC 39693 36 80.6 67 ..........................AA.C..GTTT GTTGTTCAGTGTGTCGTGGATGTTACCTGATTCACTTTTGAGTTCTCCCACCTGAGTGGGGGTGATC 39590 35 77.8 0 ....................T..-..C..CA.GTA. | ========== ====== ====== ====== ==================================== =================================================================== ================== 38 36 98.8 31 GTTTTAGAAGGTAGTCTATTCAATAAGGTTTAACGC # Left flank : TTAGCGAATCCTTGTTTCAAAAGTACATGACTAAAGTAACTAACTATGTGGTAGAAGACCTTAGTGAAGATGGACGAAATAGAATTATTACGCTCTATCGTGACCTGCTGAATGCAGTTCAGGACGAACTCTTTATGGAGGATCTTCCATTGGCAATAAATTTTGATACAGACTTGAAGAAACTGATCAAATTTGGAGGAATTCATTTTGATAAATCTCTGGCTACAAATCCATATGGTATAATTGAAACGGTACTTAGGATACATGATAGATTAGGTCTTAAGTCCATAGTTGCTTTTAGTAATGTAGCTCATTACTTGGATAAGCAACAGTTGAATGAACTTTCTAAATTATGTCAAGAATTAAATAAAGCAGTCATTTTGATCGAATTTTGTAGCCAGCATGATCAATCAGTATATCGGGATGCAAAGTTCAATTATATTGACGAGGACCTTGTTGACTGGTATTAACTCAGATTAAAACCTTGTTAAAAAATAACG # Right flank : TTTTCACAATGTGAGAAGTACTTTTTTACTTGTTTAATTTTTGCTAAAGCAATCGCTATCGCGCGCATCAGGAAAAAGATTATAGTAAACTATAATAGTTTAAAACAGATATTAACTATTGCTGTTTTGATTATTATTTAAAAAAAATCCCCAAAATGGATGACTTATTGAGGAGAGTTAGTTAATAATGCAAGAGATATATGTTGTTGCCGCAAAGAGAACCCCATTTGGCCGCTACCACAAGCAGCTGGCCGACTTTTCCGCCGTTGAACTTGGCGAAATCGCTCTAGAAGGGGCACTGCAAGAAGCAGGTCTGGATGCCGAGGCTCTGGATGCCCTCTTTATGGGCAATGTCCTGTCAGCTGGCCTGGGTCAAAACATGGCCCGGCAAGTGGCCTTGAACACTGGAATGTGTCAGGATTCTGTAGCAACCAGCATCAATGAAGTTTGTGGATCAAGCTTGAAGGCCGTTCGCCTGGCTCAAGCCCAAATGGCCATTG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTAGTCTATTCAATAAGGTTTAACGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //