Array 1 10546-13371 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZRM01000010.1 Petrotoga miotherma DSM 10691 P._miotherma_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 10546 30 100.0 37 .............................. GTTTCTTCTTGTTTCACAATTTCAAGAACTTTTTTTT 10613 30 100.0 38 .............................. TCCATTGAAAAAGGCTTTCCTTGAAAAGAACCCTATGC 10681 30 100.0 36 .............................. TCTTTTAAATGTTTCTATTTTTTTGGGTTCCCACGA 10747 30 100.0 36 .............................. AGCCTATAGCCCCAGACTTTGAAATAGCGTCTACTA 10813 30 100.0 36 .............................. AAAATAAGTCCGCTCAAGATGAGGATTAAGTTGGAA 10879 30 100.0 36 .............................. TTTATTTCCTTTATTATTATATTCAACAGTATTGAA 10945 30 100.0 39 .............................. ATAAAAAGATTTATGATTTTTTAGAAAATTCGGATTTTA 11014 30 100.0 35 .............................. AGTTCCACAAAGAAATTTTCTAGCTGCCTGCTTGC 11079 30 100.0 37 .............................. TTTCCTAAAGCGACGATTGTACTTCCGAGTCTATCAA 11146 30 100.0 36 .............................. GTTGAAGATGTAGGAATGAATACATGCATAATTTTT 11212 30 100.0 37 .............................. TCGTCCCAAATGTTTTGCTTTCCCTGTGGCATTCTAC 11279 30 100.0 37 .............................. TTTGGAGGTTTAGATCGGTTGCACCTTCTGAAACTTG 11346 30 100.0 36 .............................. ATAATTCGACCTTTAGCTGTTTTCCTTTGAGCATAT 11412 30 100.0 37 .............................. TTCTTCTCCTTCTTCAAATATACTACTTTCTATATCA 11479 30 100.0 38 .............................. CTAACTAAAGCCCCAAGAGCTGCTATACCTGCGGCTAA 11547 30 100.0 36 .............................. CCCCCTTTTCTAACTCCTTAATTTTCCTTTCTAATT 11613 30 100.0 36 .............................. CCCCCTTTTCTAACTCCTTAATTTTCCTTTCTAATT 11679 30 100.0 35 .............................. ATTTTAAAATTCTCTGGAACAATTTTTCTTAACTC 11744 30 100.0 37 .............................. GAGGGAACACCCTTTGTAACTCTGAGTTCACTGTTAC 11811 30 100.0 37 .............................. CCTCTAAACTAATTGAGGAGGTTATCCTGTGGGTATC 11878 30 100.0 37 .............................. TCCAAAAGATAAAAGAAATAGTAAAGATTTATGACAC 11945 30 100.0 35 .............................. CAAGCTTACTTTGAAAACAAAGAAGTAGTGTATAA 12010 30 100.0 37 .............................. CTCCAACGGAGCAAAAGGGATAAAAAAGAGGTGAATA 12077 30 100.0 37 .............................. AAACCCGAGTGGTTTATAGGATGGTTGCTAAGTTTTT 12144 30 100.0 37 .............................. TTGTCTTTATCTCTCCACGCATTATATTTCCATAAAG 12211 30 100.0 38 .............................. TAGATTGTAATTGCGACATCCGTTGCTTTTGCAGCTAA 12279 30 100.0 37 .............................. GCAAATCAACTCTACGTTCTGGATCTTCTTCTTTATC 12346 30 100.0 37 .............................. TAGATTATGTCTTTTCTGAACTTTCATCTGAGGTATC 12413 30 100.0 36 .............................. TCTAATAAACTTCTAATTTGATAACCAAAACATCTG 12479 30 100.0 38 .............................. TACACAAGTGTATTTAAAGTATCTACTACTTCCCTAAA 12547 30 100.0 36 .............................. TTGTTAAGCCTTGTCTTTCTCTCAATGGAACTTCTG 12613 30 96.7 37 .........................A.... ATCGGAAGAGTAAATAAAAATAACGGGCTTGCTGTTC 12680 30 100.0 35 .............................. ATTCTTTTCTAAAATCATTTGAGAATATTACACTC 12745 30 100.0 36 .............................. TACTTTAAGACCTCCTTAAGTTTAATTTTCTAACCC 12811 30 100.0 36 .............................. TCTAGAAGTCAAGGGATGGTTCACGGCAGCGGATAG 12877 30 100.0 37 .............................. CCTCTAAACTAATTGAGGAGGTTATCCTGTGGGTATC 12944 30 100.0 37 .............................. TCCAAAAGATAAAAGAAATAGTAAAGATTTATGACAC 13011 30 100.0 36 .............................. TTCAGTACAAAACTTCTTTGAATAACTGTCATTTCT 13077 30 100.0 35 .............................. AGGCTTTTGATCAATATTCTTAGTTGATTCAATAA 13142 30 100.0 36 .............................. TGAAAAAGGGCGTACTGTACAGGTTCAACAGGTTCA 13208 30 100.0 35 .............................. TTAGATCGACTTCCAGAAGCTCCGTGTGCAGATGC 13273 30 100.0 39 .............................. GTGCCTGTTGAGGGATCTATTTTTTTGACTGTATCATCA 13342 30 86.7 0 .................A.........GGA | ========== ====== ====== ====== ============================== ======================================= ================== 43 30 99.6 37 CTTTTTATCCTACCTATGAGGAATGGAAAC # Left flank : GGTGATTGCCAATCTAAGGTAAGGATGAGTTAAACCTTTCTCTAGGAAAAAGGTCATTATAAATCCAAGAAGAAAAGACCCAAGAACATTAACTATTAAAGTACCATAAGGTAAAACACCCTCAAGTTTCAAGCTAACCCACCTCGAAAGCAAAAATCGACTAATCGCTCCAAAAAATCCTCCTAACCCTACAAAGAAAATTTCTACCATATTTGGCTCCTTTCTTTTTCTAAAGATCTTTTAACATTATTATATATTATAATTATTCAAAAACAAAAAAAGTTATAATATTTATGGAGACCTTAAAATAGAAGATAAAGAAAATAATAAAAAAAGTCTGTCGATCTCCAATAAGGTAAAAATCCTAGGGGATCGACAGACAAGTGGTAAAAGTCACAAGCATCATATCATGTATATTTGAATTGAATTTTAACAATTTTTCAAAATTTTGTTTGACAATCGTAATTATTTATGATATAGTATTTATAGATATCTTATGC # Right flank : ATGGAGAGAGGAATGAAAAGCTGGGGGAGGGAAAGAAAAATATTCCAAGTTTTAAATTATCTGAAATAAGAGATTTATCGAAGTAGTTTGAGTAAGCTGATTCTATACTAATGCCAAGTATTTAAACATTAAGTTTGCTCTTAAAAATATCACTCCTTTGTTGTGAATGTTCACAGCAAGGAGTGATTTGTTTTTGTGAAGTGCTTTATAAGATATTTTTTTTGACTCACTTAGAAAAATAATGGGGAATTTAAACTGGAGTTAACTAACTTTACCAATGGAAAAAGGGGACAAGATATTTTGTTGCATAAGAGGAGTTTATAATTGAATAATTTATTCTTCTAATGATTAAAAGAGTATTTTTCCTTTGTTTATAATTCATTTTTTACAATCCCACTTTTTGAAAGAGAATCAATTTATTATAAATAAATTAATAAAGCATGTTATAATATTTTTATACTTTGTAAATTGAAGATCTTTTATTATTAAAATATTTTACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTATCCTACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 21913-24599 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZRM01000010.1 Petrotoga miotherma DSM 10691 P._miotherma_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================== ================== 21913 30 93.3 37 .................A...........T TGATTTACGTTTAAAATACAAAGAAGAAGATAATAAA 21980 30 90.0 40 .................A......A....T ACTATTTCGATACGCTTTTCAAGTGTAAAAGCTGCTCCCA 22050 30 93.3 36 .................A...........T TCTACAAGCTGCTTCCATACTTTTTCTTGTTCTTTG 22116 30 93.3 37 .................A...........T CTGGCTTTACTTAAACGTATTGAAGAAGTTGAGGAAC 22183 30 90.0 37 T................A...........T CTGGCTTTACTTAAACGTATTGAAGAAGTTGAGGAAC 22250 30 96.7 37 T............................. AAGAGAAATAGAGTAAGTCTGAAAGTCTAAATTAGCT 22317 30 100.0 37 .............................. CAATTAGATTAGTTTAAGCTTTTTAAGCTCATGATGA 22384 30 100.0 36 .............................. ATGTCAGTATAACAAAGTATAACATCCCAATTGTCA 22450 30 96.7 37 .................A............ CCGGCATCAGCTTCGTTCCAACCATTCGCAAGGCCAC 22517 30 96.7 39 .................A............ CGTTGACTTGGTAGACACATACCTTTCAGCGTCAAATGA 22586 30 96.7 38 .................A............ ATAACCTAAGACTGTGTAATATACCGTGCCATTTCCTC 22654 30 96.7 37 .................A............ CAGTCTTGATTTCGTCGATATCATCGTTTATTTCTGG 22721 30 100.0 35 .............................. CCTAACTTAGTCTCTGGAGCTGTTTTCCAAGTCAT 22786 30 100.0 36 .............................. TAACGAATTGTCTAGCTTGGTTAATGGCAGACTCCA 22852 30 100.0 38 .............................. ATGTAACTCCCTCAGATAATGTTGTTGATGAGGATTTT 22920 30 100.0 36 .............................. TGAAGTAAGACCTCAAAAATTCCTACTTTAGACCTA 22986 30 100.0 35 .............................. TTCTGAAAATGTTGTAGGATTTATAGCGGCTTCTG 23051 30 100.0 36 .............................. GATAAAAAGAAGGTGTAGTTATGGAAGATAATAAGG 23117 30 100.0 37 .............................. TTGAAATATTCAAGGTTGGCAAGCTCAATCTCCTATC 23184 30 100.0 36 .............................. CTACTAATGTTCGGGCTCTAATGCATTTCTTAGATT 23250 30 100.0 36 .............................. TAACATCAACGGGTTCTTGTTTTTGAGTTACTCCTG 23316 30 100.0 38 .............................. TAGTATACGGGTTCCATAGGCTTGCCTTGATAAATACC 23384 30 100.0 37 .............................. ACAAAACCATAATAGAAATAATTATCCTCATTTTCAA 23451 30 100.0 37 .............................. CAAACGAAAGTTATAATAATATAATTCTTTTCTCAAG 23518 30 100.0 38 .............................. TAGTCTACGAAGACAAAATTAATGTTTTGGTATTTAAC 23586 30 100.0 35 .............................. GTATATTAGAAAGTTTGAAAAGGCAAAAAGAGTGG 23651 30 100.0 40 .............................. GCCATTTCCTTTTCACTTTCGCCATTGAAAAAGCCTTCTA 23721 30 100.0 38 .............................. GAAACATTTGGTTTCTTTGACCAGCATTAGCACGTCTA 23789 30 100.0 35 .............................. TTGGATATCAATACAAAAAATCAACAATCTTACAA 23854 30 100.0 36 .............................. AGTAAAAAACAATAAGGATATTTTTTGTCTACAAGA 23920 30 100.0 36 .............................. CACAACCTTTTGATAGGATACCGTTATTGTTGTTGA 23986 30 100.0 36 .............................. AATTCAAAGCTTCTAAAGTTGTTTGAGTTGCAAAGT 24052 30 100.0 36 .............................. CTTGAGCAAGTGTCGCTTGAGTTGCGAAATCTTTAC 24118 30 100.0 38 .............................. ACTGTAGTTACTTGTACCACCTTGTAAATTAGTTATAC 24186 30 100.0 43 .............................. TAAGCTAAAGCTGTTTCTAGGTTCATTAGATGATCTGGGTCCT 24259 30 100.0 40 .............................. GTTCTTCTTCTAAAATTTTAATTTGCTTATCAATTTCTTC 24329 30 100.0 39 .............................. CTGACTTGAATTTAAACATTTTAGTATTTATATCATATA 24398 30 90.0 56 ...........................GGG GTTGGAGAGGAATGGAAACCCACCAATTCGAATTCTTCCAACCATGTGTCCTGACC 24484 30 93.3 56 ............................GG TAGGGGCGAGGAATGGAAACACTGATGGTAAGTCTGTAAATATTCAAGCTCTTCAG 24570 30 80.0 0 ........A....A....G.....A...GA | ========== ====== ====== ====== ============================== ======================================================== ================== 40 30 97.7 38 CTTTTTATCCTACCTATGAGGAATGGAAAC # Left flank : CCAAAGATTTCAATAATGCTCCAGGAAAAAACATTTCAAAAGTTAAACCCTTTTTGACTCCTGGAACAAGAGTTACAGGAGAACGAGAATATGAGGCAGAATTAAATTACGATGGTACTCTTATAAACATTAAAAAAAGAAGAACAGGATGATAATTGAAAGAGTTATAGAAGAAGCACAACCTTATTTAAAAGGATTAAAGATCAAAGATACGATTATAGGAATTTCACTTATCGGGTTAGAAATTAGTAATAATCACGTATTTTAAATTAAAAATCAAGGTCTCTCTTGTAATATATTTTATTAACATAAAAAGCAGGAAGGTATGAAAAAATGTCTGTCGACCACCAATAAGATAAAAATCCCCGGGGATCGACAGACAAGTGTTAAAAATCACAAGGCTTATATCATGCATATTTGAATTGATTTTTAACAATTTCTCAAAATTTTGATTGACAATCGTAATTTTTTATGATATAGTATTTATAGCTATCTTACGC # Right flank : ATGAGGAGAGGAATGAAAACAATACTATCTCTCAGCTTCCAAGTAATCTTTCCTTCCTACTAACCTTATTTTAATGAACTGAAAGTAGGAAAGAAAAGATAACCTGTAAATGTGAGGCTTTTTTTCTTCCTTTTGTTCAAAAAGAGATGAAGAAGAGAAAGGAATGGAAGGTGGGAGTGAGGAATGGAAACCTGTGTAACCGTTTGACTTCTTTTAAAATTCTGGATTTTTTATCCTATCTTTTCTTTGATGAATATAAATATTCTCAAATCATCTCCATTTTTCTTAACTTCATAGATTTTTATTCTAACAATAAGAAATTGAAACATTTTTTTAAAGCATCTTTCTTGTTTCTTCGCTTTTTTTCTTATCCTAAGAGCAAATCCACAATCAGATAAAGAAAAATATTTAAAGTATTACATTAGAAGAGCTAAAATTGTTACTGAAAGCTAATGCAAATTAATGAATTTTTTTAGATTTTTAGATGATATAATGGGGTT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTATCCTACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //