Array 1 10804-10956 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MBLO01000036.1 Frankia sp. BMG5.36 contig_13, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	=============================	==================================	==================
     10804	    29	  96.6	    34	............................A	ACGTGAGTACGCCGGTCCGCGATGGGTGCTCGCG	
     10867	    29	  96.6	    32	............................C	AGGGGTGAGGCAGACTCAGACATGGGTCTCCC  	
     10928	    29	 100.0	     0	.............................	|                                 	
==========	======	======	======	=============================	==================================	==================
         3	    29	  97.7	    34	GTCGTCCCCGCACGCGCGGGGATCTTCCG	                                  	       

# Left flank :   AGGGCGCGGCCGGCCTTGATGTACATCAGCGCGTCGAACATCGCCTCGGGCCCGTCGAAGTCGGCGGCCAGCCACCAGCAGCGGTCACCGTCCAGCAGCGGGTACACGCCGACGTGCATCTCGCCTTTCAGATGGGCGGCCAGAACGTCGGCGGTAAGCGGAAGGTAGTCGCGGTCCTCGTGTCGGACGCCCTTGCGCCATCCTCCGCGCACCGCCGGGACCCAGCCCGACTTGCCAGTGCGGCGGTTGTCGAACCGGACCGCGTACACGTCCGTGCGGGCGGCGAACAGTGCCCCGAAAAACGCCACCTTCGCCGCGGGCGGGGAGCCGTTGTTCACCAGCCCTGGAGGTGCTTCGAAGAAGGCCGCCTGCGTGGGGCCGGGCGGGGCCGCCTGCTGCGGGGTGAGCTTCAGCAAGCGCAGTAGGCGAGTATTCTCGGCCCGCAACCGCGCCAGCTCAGCCTCGACCTCCGGTGGAAGCTCCGCCACAGTCACAAACTA
# Right flank :  GGGGCTCATGATCTGCGATCCGCTCAGGTCCCGGAACACCCGGTACAACTTCCCGTCGTATTCGCTCTACCCAGAGACCTGAGCTATCGCGGGACCCGTGCCTGCGGCGGGTGGCCGGGCAGGCCGTGCTCGGCGAGCGGGCCGAGGCGCAGGGCCGCGTCCGCGCACCGGCAGGCGAGCTCAGGCAGGGCGCCCAGCGCGCTGCGCCACGCGCCAGGTACGCCACCGCGGTCGCTGTCGTGCAGCAGGATCGTGGCGCCGCCGCGCAGGTCGGGCCCGACGGCGGCCAGGACGGACAGCGGCGTGGCGCCCGCCTCCCAGTCACGTCCACGCGCCGTCCAGAGCACCGGGGTCAGCTCGAGGCGGCGGGCGGCGGCGAGCACCGCGGCCGACAGGATGCCGTGGGGCGGCCGGACGAACCGGGGCGGGCGGCCGGTCGCCGCGGCGACCAGCTCGTGGGTGCGGGCAAGCTGGTCGTAGGTGGACAGCGGGCCACGCAG

# Questionable array : NO	 Score: 5.56
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGTCCCCGCACGCGCGGGGATCTTCCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 96% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-12.70,-12.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0.37   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//


Array 1 41339-41580 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MBLO01000051.1 Frankia sp. BMG5.36 contig_143, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence         	Spacer_Sequence                                   	Insertion/Deletion
==========	======	======	======	========================	==================================================	==================
     41339	    24	 100.0	    47	........................	GGCCGGCTGGACCGGATGCCGTCGGGCACCTCGCGCTTGCTGACGAC   	
     41410	    24	  95.8	    50	.............A..........	GGCCGGCTGGACGCGCAATGTCATGCAAATAGTCCAGGCCACGTTCCAGG	
     41484	    24	 100.0	    49	........................	GACCGGCTGGACCGCCGCGGCCGGCCTGGAACGACGGCAGCGCGTCCTT 	
     41557	    24	 100.0	     0	........................	|                                                 	
==========	======	======	======	========================	==================================================	==================
         4	    24	  99.0	    49	GCCGCAATGGAGAGCCGGCTTGGA	                                                  	       

# Left flank :   TCGGCATCGCCGCAGCGACGGCCGGAACCAGCGCCCTCCTGCTCACCCGCCTCGGCCGACTCCTGCTGCGCTCACTGCGCGCACTCGACTCATGAACGAGTAGCCCGGCTCGCCGGAGAACGGATCGGCGTTCCGCTCTCGACCTGGTCAGCCGGAGTCGACCGTGACGCGAAGGCGATCCCGGACTCCGCCGACGGCTTTTGGCCGCCAGCCGGCCGGCGGGTTCAGCGCCGCAGGTCACGTCCGGCGGCCCGCAGGACTCTGCCCACGACCAGACGCGGCGTCACCACCGACCTCCACGAACAGCACGGCGCCTGGTCCGCTGGGAACTGTGCGTCCCAACGAGCAGTCTCCCCGGCAGACCAACCGCTCTGCATCGCCGGCGGTCGCAGCAGGACATGGGCCTTCGGCTCCAGTGCCGAGCGGTATACGGCCTCCCACGGAGGCTCGTCGCGTGGCGACGGAGTCACTCTCGGATGGTGAACCGCTGAAACCGGCAT
# Right flank :  GGCCGGCTGGAC

# Questionable array : NO	 Score: 2.65
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCCGCAATGGAGAGCCGGCTTGGA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [-0.50,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [35.0-3.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.64,0.41   Confidence: LOW] 

# Array family : NA
//