Array 1 309081-308256 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIDF010000001.1 Anoxybacillus rupiensis strain DSM 17127 Ga0373222_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 309080 30 100.0 37 .............................. GCCAGAAACAGGCATCAGACATTTTAGCTTTAGCACT 309013 30 100.0 38 .............................. AGCAAATTCGAACGGTGAATGACTTCTTCAACCGTCTC 308945 30 100.0 37 .............................. TAAACCGTCATAAATAGCAATTGAATGTCTGCCCTCT 308878 30 100.0 35 .............................. ATTTCTATATCTGCTCCGGCAAAACCGAAGCCCCC 308813 30 100.0 36 .............................. AAATAACAAAGTCTAGCCCACGTTTGACCATTATCT 308747 30 100.0 35 .............................. AAAATTCTTGTTCTGACATTATCGATCACCTCACA 308682 30 100.0 37 .............................. AAGGTTTTCAGAACGTAATTCCATATTGCGACTTCAT 308615 30 100.0 36 .............................. CTTGGCAAACCGAAGGTGCTTGTCCGGCATGATTTG 308549 30 100.0 37 .............................. AAAATCGAACTATTATGTCCGATGTTTCCAGCACTGT 308482 30 100.0 35 .............................. TTATAAATACGCATCTGCAGCCGACCACGAGTACC 308417 30 100.0 35 .............................. ACTCATGGGTTCAATGAAGTATTTTCGCAGCTTCA 308352 30 96.7 37 .............................T AAACTCATTTCTTTTACCGTTTTCATTTTAGACAATT 308285 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 99.7 36 GTTTTTATCTTACCTATGAGGGATTGAAGC # Left flank : ATGGACAATCGATCACGATGAAAACAGCGGAGTATCACGGAGGCAAAGCATATCAGACAGACGCAGCATTCTGGAAGAAGACTTGGCGAAGCTCTATACAATATAGTGTTTTTTAGGATCGGAATAAATATAAATCGACTAACTTAATTCTAGCCGGACAAATTTTAAAAATGCCTGTTAAAACAGAAAAAGCTGAGTATTACGTCGTCAAGAAGGACGACACCCTGACTAAAATTGCAAAGAAGTACGGAACAACCGTGCAACAGTTGGTACAATTAAATAAAGTTAAAAATCCTGATCTGATTTTGATCGGCCAAAAGTTACGTGTAAAATGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACATTTTCTTATTAGTCAACAATCCTGCAATGGTAAAGGAAAGAAGAGGTTGCTAGAGTTTTTAGATAAGTTTATAATAGCATTGTATCCATTTTCCAAATGCTGATTGAATCATGGATGTTGGG # Right flank : CGTTCCTTGCTGTTTGACAGTTTTTTGTATAAAACCGTACATTTGTTCTTGTTTTTATATTCTGCAATCGGGGAATTTTTAAAATATGTTGAATTTTTTGGTTAAAATTATAAAAATTTTCATAATGAAGTCGATAAATAGTATAGGAGTTTATTCCACTTTATTTCTTAAAAAAGAAGGAAGAGTAAAAGATGAAAAAATTTATACTGGCATTCTTTACTTTATGTTTGAGCTTGGTAGTTGTTAATACTACTGAAGCAGCAACTCCAATTGGAGAAAACTCTTCTATTTTTATTGAAAATCTCAAAAAAGAACATCCTGATTGGGTAATAAATCCTGTAACCCAAGAAGAAGTCTCTGAAATTCGTAAAGAGATGGCTACAACAAATTCAATAACAGGATCTGCGCCACCGGTTACAGCATTATATATTGATCAAGTAGGATGGGATCTTGAAACTACAACGCCACAAATCCAATATATTAATAATGAATTAACCTCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATGAGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1272-977 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIDF010000002.1 Anoxybacillus rupiensis strain DSM 17127 Ga0373222_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1271 30 100.0 35 .............................. GCCCAATAATCAAAATCAAAACCTTCGTCTTTCGG 1206 30 100.0 36 .............................. TTCTAATTCGACATCCAGCTGTTCGAGCAATTCATC 1140 30 100.0 37 .............................. AATCCTCAATGCCGCCAGCCTCAACCACATTCACTCT 1073 30 100.0 37 .............................. CCGTCCGGATTAGCTATTGAGCTAGAAAATATCCTTC 1006 30 86.7 0 ................TA..A........T | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 97.3 36 GTTTGTATCTTAACTACGAGGAATTGAAAC # Left flank : CTGGGAAACAAAAATTTACGGACCGTCGCGGAAGAGCTGAACAATTTATGAAAAAATATCATTTGCAGCAGCAAGATAAATAATGGAAGGATAAAGCCGTACGAGACCGACCGGGAGCCAATGGTTTTATTGATGAGGGAGAAAAAATTGTTTCTCATAAACAACTGTTGAGTAAAAAAAGAGGGTTTCTATATAAACCCAGTCTGCCTTTCCAGATGCGTCCGTTTAAAATTTTACTGGGATGAATTGATAAGCCGGATTGATATAGCTTATTGGTCATGCGATCCCCTTCGGATCGCTACGGGGTCTGAACAAAGCACAGATAAAAAATAAAGTCGTCGACCTCCAATGGCGTAAAAATCCCTGGAGATCGACGACACATACATTTTGAATGAAACGACTGTCCGATCAACCATTGCGCAAACATGCGCCTCTCGTTATAATAAAACTAACAAATCGTTCCAAAAACCAAAAAGCTTAATCTATCAACATTTGTTGGG # Right flank : ATCGTGTGGGATGTTAAGGGATTAGCTGAAAAAGAACGCAGAGCCAGTGTATGGTTCTACGTTCTTTTTTATATAACTTAAACGATCGTTACTTTTTTGTTGAAAAAACAACCTATAAAAAATACAGATAGAATATAGATGTATTAAATAAATACAGGATATTTTTTGTTTTATTGTTGACAATATTCAGACGATTAATTATTATGTTTTATATACGATATTTACAAAAACATAATAAAAAGAGGTGCCTGAAAATGGATAGGCAAGAGGCGGTGTATTGCTCATTTTGTCATTCGGTGGATGTGGCAAAAATGTCTATGTTTGGAACTGCGCAGCTTGTTTCGCAATATTACTGTCATCAATGCAAAAGTGTTTTCGAATGGGTGCGATGGCGGAGGACATTGGATGAAGTAGAGGAAAAGCGATGAAAATCTGAGGGTGCGCTTTGCCTTTTGAACCGCTTGTTAATGGAAAGATTGCTTGTGGAAGGATGCGAAAGC # Questionable array : NO Score: 8.92 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTAACTACGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 2 13498-13068 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIDF010000002.1 Anoxybacillus rupiensis strain DSM 17127 Ga0373222_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 13497 30 100.0 36 .............................. GAGGACAAGACGCGACGGTGCTCATGGCTGGCGGCT 13431 30 100.0 36 .............................. ACAACCTCGTCATCACTCATGTTCTGCAACTCTGGC 13365 30 100.0 36 .............................. ATCTTCGGTCAGGGTTTGAACGGCTTTTTCCCTCGG 13299 30 100.0 38 .............................. CTTCCTGTCACCCACCCAGCGACTTAACATAATTCTTA 13231 30 100.0 36 .............................. TGATAGGAGATATATCCGTGTCCTTGTAAATAACTT 13165 30 100.0 37 .............................. GACGCGGACTTTGTAAAAGGCGATTTCTGGTCCATCG 13098 30 90.0 0 ........................C...TT | A [13071] ========== ====== ====== ====== ============================== ====================================== ================== 7 30 98.6 37 GTTTGTATCTTAACTATGAGGGATTGAAAC # Left flank : CATTGTCCGCTTTCTGTCAAACGACACACAACGAAAACAAATGGAGCTTGCGGGGCGCGCCTATGCACTCACCCAAAATTGGGAGGTTATTTTCGAAAACTTAATTTCTGAATATGAAAAAGTATGGCGCCACCATGCGGAGAGGCTACATGCATAGCGTGTGGGGAGACAAACAAAAGAATAAGTTTATATACTTTCGATTCATTACAAACTCAAGATGTATTGATATCACTAGCGATGTTTATTTTATGTGTTTTCCGCAACTGATCAAGATCAGGGTTAATTTGCCAGTTTGGCTTCATGCATAGAAGGATGACAAGCTTCTGATGAAAGCTGTCGTCGACCTCCAATGCTGCTAAAATCCCTAGGGATCGACGACAGTTTATTTTTATAAAAAATCTTGGCACAATCAGCAATTGCCCCCATTTCTGATTTTCGCTATAATAAAACCAACCATTCCACCCAACGAAAGAAACACGGCAACATCAACATTTTTTTGG # Right flank : TTACAAATAATAGGAAATTCGATAAAACAAAAGCATGGTTTTATTTATTTAGTAAATTTAATTTTCTTGCCGTTAATTAGAGCGATTTTATAAAAAATCGTTCTACCAGCCAACTGGAGGACACTAAATGAGCCTAATGCTCGTTTGGTGTCTTTTTTATTTGTAGGGAGATCATTTGCATGAATAACCTGATCCAGCAATATTAAAGGTGGCAAAGAAAATATATAGAAGCGCCACTGTTGAGGATAAAAAAGTGATTGCTGGAATGATCTTTGATCTGGAATTTGCCATTGAGTGGATGGAAACAGAAAGAAGACCCGGAAATCGGCGAGGGATTGAACGTAGGGCAGCGTATCAATGTGAGAAGATTTTTGTCCCATTACTGACGCAAAAATATTTCCGTTCCAGTGAACCTACTTACGAATGGAACGATCACGAAAAAGAAGATGTCATTACGAGTTGGGATCGGGAACGAATTGAAGATGCTTTGTCTGTGCTGA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 3 22757-22524 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIDF010000002.1 Anoxybacillus rupiensis strain DSM 17127 Ga0373222_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 22756 30 100.0 36 .............................. CACTTCTGGGTATTCTACTGTTGCGTACGTGAATGC 22690 30 100.0 38 .............................. CCGTTCATCTTTTGACCTCCAATAACATTGCTTTTTAT 22622 30 100.0 39 .............................. ATGAAAATATACAATCACATACTCAAGCGGCTCCTGGAA 22553 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 4 30 100.0 38 GTTTTTATCTTAACTATGAGGGATTGAAAC # Left flank : TACTGAAGAAGCATCTAAACGTTCTCACTACAATTTTAAGCAGTCTTTAAATATGGAATTCTTAAAATTATAGGCAAGTTGATTTTTTGTTATATTCTATTATCTTCCTTTCTGTTCATGGAACTTCTTCGTTTACTTCCATATTATCCGAAAAGCTTCTATTGGCCGCAGGGAATAGCATATATAATGAATCGTTTTAGGAATCAGTAACAAAAGACTCTATCGTTTCCCTGCTTTTAAAACAGCCTACGGCTCTGATATTTCAGAAAGACCGAATGGAAAACGCCGCTGCGAGACAATCAATTTTTTACTAAATCTATGAAAAAAGATTTGTCGTCGACCTCCAATAGCGCACAAACCCCGGGGGATCGACGACACATGACCAGTCATCAAAAACCCTACAGCCATAAGGAAAAGAAACGATTGATCGAATTTTAAGATAAGTTTATAATAACATTGTATCCATTTTCCAAATGTTGATTTTATCATAATGTTTGGGG # Right flank : TCAATAATAAAAAGCCCCTTCACTTACATAGGAAGAAGGGGCTTTTGATATTTATGACTATTGGTCAGTAGCTCCTAGGTGTTTTTTAATGCTTCTTGAAGAATTTGCGAATAGTTCACATTGTATTGTTTCGCAAGGTTATCTACAATGAACCCATAAGCTGAAACACAAGGAGGCGATAAATAAGTTATACTGAGGACATGGAGAAGCGGAATCGATATACAGCAGGATGTAAGACGAAGGTCGTACTGGAAGTGCTGAGGGAAGAGCAGACGGCAAATTGAGCGCGATGGAATAATGATTTGTCCCTATCTTGAATTATGTCTTTGCTTAAATAACATGCTTGGACGGCGCGCATCTGCACCGCCCGCTTCACTGTTCATAAAAAAGAATCGCTTTCGTGAACTCGGTAAAGTCGGTTAGATGGTGATCAAGTATTTTTTGCAAAATGGTCAAATTAATCTCCTGGTAGTCGTGAACAGCGATGTTTCTAAATCCGA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 46627-46130 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIDF010000002.1 Anoxybacillus rupiensis strain DSM 17127 Ga0373222_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 46626 30 100.0 36 .............................. AAATGACGCGAAGTACGGAGGATTTGCCGCCGCCTG 46560 30 100.0 35 .............................. CCGCCTTCCTAGGTGCTTTATTCGCAACGGATGGT 46495 30 100.0 37 .............................. GATGTTGTGATTCTAGCGGATAAATCAACACTGTTAG 46428 30 100.0 36 .............................. ATTTCTGTCTTTCTCTGCTTCAAATTTCGAATTTCT 46362 30 100.0 37 .............................. CCAGTTTAAGAGAGGTGAATAGAATGCCATTTGACCA 46295 30 100.0 38 .............................. AAAAATAACTATCTGCTAAAGGACACAACACTAAAACC 46227 30 100.0 38 .............................. CCGTCTAATCCTGTGTCACTCACCTCAAGAACGAACTC 46159 30 86.7 0 .................AC..A...A.... | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 98.3 37 GTTTTTATCTTAACTATGAGGGATTGAAAC # Left flank : CGTATCATTTAGAAAACTACTAATATAATTGGTTTATGTAAACGATATTACAAGAAACAGGGGAGGGAGGAATGATGGGGAGAAAGCGGTTGTGTAGCATGGTTGATAGTGAAAGAATGATTATAAATGGTTTGTAAACTCTCCACCGATTATTAACCATTATCTAGTATTTGCTCGAAATCGTGTTTTCACAAACTCCATTTTCAGGAAGGAAATTCGAAAATCGGAAAGCGATTAAATAGGATGGAAAAGCGGTTGAAAAGTGTGGAAAGCGGGCGAGGGGAACTAGTAATAACTATTTACTAAGAAAATCGGCTTAAGGAGAGAAATTAATGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACACTCCCCCATCACCAGCGACCATGCCCATCAAAGGATTGAAAACACCTAGCCCTTGAGCTAAAATAAAAATAACCTAGTAACTATTTTAAACCAAATACTTATGTAACAACGATTTTTTGGG # Right flank : AAAATAAGGAGGGGAGAATGTGGTTCCGGAGATCATCGTTGCGTTGTTTTGTACGCTATATATTGTGATTTTTTTAAACCTTTTGATTCGCTTTGTAGAAACCGAGCGAAAAAAAGGAAAGGTTCTCTTGCCTACGATGGAAGATACCGCTTCAAGAAATCGGTATCGCATCAGAACTTTAAGTTTTGCTCAAAAAAATATGAAGGGCCTATTTTTTATGTTAGGAATCGTTCTTCCTTTGGTCGTGATGATGCTCATCTTTCATATGGGAAATGTTTCCTCCGTTTTCCCATTTTTATATTGGGCATTGATGCCTTTTATTTATTTGAACTTATTTGATTCTTTTGAGATTTGTGAGAATGGAATTTGTGGAGATAAGCTGTACCGTTGGGATGGAATTAAACAAGTTTCATTTGAACCTATCGATATTTTTCATCGTTATTATGGTTTGTTAGAGACGAATGAAACCACTTATGCGATGTGGCTGTACGATAGGGAAG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 391785-395144 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIDF010000003.1 Anoxybacillus rupiensis strain DSM 17127 Ga0373222_03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 391785 29 100.0 36 ............................. AAGACTAATTTTATGTTTTGGTGTCTTTATTTTTTA 391850 29 100.0 36 ............................. AAGAAAACTGTTGATACACCACGCAACTACTTTATC 391915 29 100.0 35 ............................. TGAGCTGATAGAGCTTGTCCTTCATGGTTTTGTAC 391979 29 100.0 37 ............................. ATGAAGGAAACGCCTTTTAGTGACGATACGACATATT 392045 29 100.0 36 ............................. GCGTTCGCATATCTTCAAACAAGGGGAGGTATGCGC 392110 29 100.0 37 ............................. TATAAATATTAAGTTACGTTATTTTCACCGTTTTAGT 392176 29 100.0 37 ............................. TGTCAAAGAAAAAGATATTTCTGTTTTGTTCGGTTTT 392242 29 100.0 39 ............................. ATACAAGTGTTCAAGCAAGAATGACAGAATACGAGCAGC 392310 29 100.0 35 ............................. TCGATCGTGTTTGTGATGCATGGATATGAATACGA 392374 29 100.0 35 ............................. TTGCAAGTTGGCGGGAAACTTGGAGATTTCTTCGA 392438 29 100.0 36 ............................. AGGGTTTCTTCGTCTACCCATTCATCGTAGTTTTTA 392503 29 100.0 37 ............................. TAATATTAGGAATATCTGTTTCCGTCACAGGAATAGC 392569 29 100.0 36 ............................. GCTTAGCGATATCTTTTTCGTCTTTATTCGTTAATT 392634 29 100.0 38 ............................. CCACAACTTCGAAAAGCAATTGAGGCTGCTACTAGCTC 392701 29 100.0 36 ............................. CCATGTGCAGAATCATGTATAGGTGGTTTGCCATTC 392766 29 100.0 35 ............................. TTGAAATATAAAACGAAATTACTAAAGTTAACACA 392830 29 100.0 36 ............................. CCTGAAGGCAGGGGATTTTTTATTTTTACGACATTG 392895 29 100.0 35 ............................. AAAGGCTTTTCATTTGAATAAACAAAATCAAACAG 392959 29 100.0 36 ............................. GGACTTGATGAAGAAGGAAATGAAATAACAACATCG 393024 29 100.0 37 ............................. TGGCAACGGTAGTCAACGCTTTTGTTTCTCCCCGAAA 393090 29 100.0 36 ............................. TTGCGACCCACAGGCTTGTCCATGTCGCTGTCCTTA 393155 29 100.0 37 ............................. AAGTGTTCATTAACAAAATTACTCTCATATGACTTGT 393221 29 100.0 35 ............................. TCAATTCTTTTTCTAGTTCCTCTTCTTCCTCTTCG 393285 29 100.0 36 ............................. AAATATAGCATTTCTGGACTAGTTGCAAATGTCTTA 393350 29 100.0 36 ............................. ATGCTTGACGGGGGACACAGTCCCCCGCTGCCCTCG 393415 29 100.0 36 ............................. AGTGTGAAGAGAAGTTAGAGTTTGCTCAATCTCTCA 393480 29 100.0 35 ............................. ATTTTTAAGGGGGAATAAAAATGAAAAGTTTCTAT 393544 29 100.0 36 ............................. GGGACTCTCGCAGGTCCGTTGATTTCTTCATGATGT 393609 29 100.0 38 ............................. AATGTCTTATACGTGCACGAAATAACTAATTCATATAA 393676 29 100.0 36 ............................. GCGGGTTCTCTTTTTGTGATTTGGTCTCCTGCCGTT 393741 29 100.0 35 ............................. TTGACTGGGTTGCTCGTGTTGGTCGTTGGTTTTTA 393805 29 100.0 36 ............................. CGGAATCGAAAACGGAAATTTCCTAGTTAGACCATC 393870 29 100.0 37 ............................. CGGTTCTCTAGCAATCTTATTTTTTCTAGAAATTTTT 393936 29 100.0 36 ............................. CTGCGTTCCGGCCCTCCGGGTGACTTTGCCGGCTAG 394001 29 100.0 38 ............................. ATAATTGCAAGAGAAGAATAGAAAGCGACAATTTCATC 394068 29 100.0 36 ............................. GAGACGTTGCTCCGGTCGATGGTAGTCTTCCGGCGC 394133 29 100.0 36 ............................. ATGTTTCTGGGTATTCTACTGTTGCGTACGTCACTG 394198 29 100.0 36 ............................. AAAGAAGAACATGAAGTTGTTATGCAAAGCATCAAT 394263 29 100.0 37 ............................. CAGAGATCTCATTATTTTATAAACATCTGCACCGCTC 394329 29 100.0 37 ............................. TCGTGAGAAGGAAGAAAGGGTTTAAATATCATGCTTC 394395 29 100.0 37 ............................. AACCGAAAAACCGGGTACAGTGTGTTGATGTTGTTTC 394461 29 100.0 36 ............................. ATGAAACAACTATCCATCTTTGATTTTATTAGACCG 394526 29 100.0 37 ............................. TGTAGAGACCGTGAAACTACAGGGACATGGCGCAACA 394592 29 100.0 37 ............................. ACGCCTGAACCGGTGGATGAAGAAAAAGAAATATCTT 394658 29 100.0 37 ............................. ACGCCTGAACCGGTGGATGAAGAAAAAGAAATATCTT 394724 29 100.0 35 ............................. GACAAACGTATTATTTAGAAATAGTTTTAAACACG 394788 29 100.0 38 ............................. ATAGAGCCAATCACAACAGTCGACACATTAAAAAAAGA 394855 29 100.0 37 ............................. TTAGCGAAAACAGACCGGAATTAAAAGGTGTGTATCA 394921 29 100.0 36 ............................. AAAATCAGTGCTGACAAGGCTTTGCAGGCTCTTTCC 394986 29 100.0 38 ............................. ACGACTTTTATTTGAATCTTCACCAGGAACGAGAAACC 395053 29 100.0 35 ............................. TAACGACGCTGAATACGGTCAATAGATCGCCGCAA 395117 28 82.8 0 ..................-......TTTA | ========== ====== ====== ====== ============================= ======================================= ================== 52 29 99.7 36 GTTTTATCTGAACTTAGTGGGATATAAAG # Left flank : ACGAGCCATATAAACCGTTAAAAGCGTGGTGGTAAAATGTTTGTGATTATTACGTATGATGTGGGGGAGAAAAGGGTAAACAAAGTATGCAAAAAACTTAGGGAATACTTAACATGGACGCAAAATTCCGTGTTTGAAGGCGAAATTTCTAAAAGCTTACTTTTGAAATGTTTAAACGAAATCGATCAAATAATTGATGAAGATGAGGATTCGATTTATATTTACGAAGTGGCTAATCCGAGAAATGTGAAGAAGAAAGTATTCGGACAGGAAAAAAACTTTGAAGAGCTCTTTTTATAGTGCGCTTTTGCCAACTTGCCGTAAACCGCTGTTTTTGAAAAGTGTGTGGGAAGGCTTGATAAATCAATAAAAAGCCGCTATTTTTGATGTGAACGCCCAACATAACTACCACCTTACTGCAAAAAACAGATATCGTATGTGTATCAACCCTAGCGATAAATGTTGATACATCAATGGATTGCTTCTTCTATAAAACAGGG # Right flank : ACTATTAATTTCTAAAAATGAGAGGAGCATTTTTAGAAGAAGGGATAACTTAAGATTTTCATCTTTCCTTCCTAAGACGATGTTACTGTTTTTGACAAATCCTTTTTGTTTAGGTTTCATTTTAAATCGTTTGTATGATCTGGGATTTTTTAAGTTTCTCATCAGCATGATCATATTCTTTTTTTGTAAAAAAAACTATAGATAGACAGTTCTAAGAACATCACACACCAATGATCTTTTATTGTCTATCTATAGGGAAGATGAACATACTAAAATATTTCTCTATCTCCGCTTCTCTTTTTCATTTCGATAAAATTCGTGGAACATTTTCATTAATGCTCGCTTTTCGATGCGGGAGACGTAGCTTCTGGAAATGCCGAGCTCCTTGGCGATTTCGCGCTGGGTTTTTTCCTTTTGCAAATCCAGTCCAAAACGGCTGATAATCACTTCTTTTTCCCGTTCATCCAGCACATCAATGTATTTTTTGACTTGCTCGATTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 103395-104218 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIDF010000005.1 Anoxybacillus rupiensis strain DSM 17127 Ga0373222_05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 103395 30 100.0 37 .............................. AATTTGAAGCAGACTTCTTCGTCACTCCCTCATTTGC 103462 30 100.0 35 .............................. GAGAAGAAGCGTAACAATAAGCAGAAACGGCAGGG 103527 30 100.0 36 .............................. AATTTCTGCCGTTCACTCTTTTCATGTACGTCACGT 103593 30 100.0 37 .............................. CGATGACACCATCCTCACATATTGATCTCTTCATGTC 103660 30 100.0 38 .............................. CGCATCATATAGCTTAAAAGTTCACGAAGGGGAACGAA 103728 30 100.0 37 .............................. TCGAGAATCGATTCTAATTCGCCATCGGCCATCGATT 103795 30 100.0 36 .............................. AGGAGTTGGAGCAACGTGAAGGCGAATCAATCGCCA 103861 30 100.0 36 .............................. CTCCTATTCTTCGAGAAGTTGGTGCATGGGCACAAA 103927 30 100.0 35 .............................. TTGTACTACATGTCCAAAGACAGGTCTAGTGCCTG 103992 30 100.0 36 .............................. AGTTTAAAAATGGGATAAAATAAATTTCGTTTAGCT 104058 30 100.0 36 .............................. TATGATGGACATTGTTCGTCGTTTGGTAACAGTTTA 104124 30 100.0 35 .............................. AAATCTAGATCATACAGGAAAACCGCCTTTGCCGC 104189 30 83.3 0 ................CA...A..AA.... | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 98.7 36 GTTTTTATCTTAACTATGAGGGATTGAAAC # Left flank : GATTTTCGTTCTCATATTGGATACAAAGAATTTTGCAACTTCTTGAGGGCGCTTCCTATCATATCATGAATCTTTCATGGCTATAAATTATTATAAGTGAACAAGTAGATAGATGCAATGTGACATGTTAATTTTGACATAGATAGAGCGTTTGGACTTTTTCTACGGTCGGGCAGACCCATAGCGCCGCTTTATGGAAACGTGGGCGGAGCTGAGGATGGCGTTATTTCCATTTTCGTTGACGAAAAGGCAAGCCCGAATCTAACAAGCTTCGGCAAACTCAAAAATCCTCATTTGTTTTCCTAAAAATGACGTATGAACGAAAGAAAAACTGTCGTCGACCTCCAGTAGCGTCAAAAACCCGGGGGATCGACGACAATTTTCTAACCGCCAGAATTCCTACAGCGATCAGAAAAAGAAGCTATTTCTCGAACTTTGAGATACGTTTATAATGACATTGTATCCATTTTCCAAATGCTGCTTTTATCATTATTTTTGGG # Right flank : CATTTTGCACGGACAGTGTTTTTACTGCCATCGACGGCGCGTCAATTATAGGGCTGTGGTGATTGAAATGGCTTTAAGAAAACACATCAGGAAACTTAAGATCAAATTTTATGTTGTGCGGTAGATATATGGGGTCTTCCCTCATTACATTTACGTGATGGGGGATAGACCCCATTATTTGTTTATTATCATATAAGCCTCAAGTCTTATTCGAATATACATTTGAGGTCCATTTTGGAACATTCCCTTTTACTGTATTCTTACAATAAGAAAAGGAAGAGTCGCTTGATCTGATTCCATCCAAGTTGTAGATCGAGGCAAAATGTCGAATATGCCATTAAATGGAAGATGACTGAAGCATTAGATCATGCGTGAGGTTCAGCTGTTTTAAGGGCGCCTGAAAAAGTTGATGGTTCGAAGTAGGGTGAAGAAACTGATGTAAAATTTAATGGGAAAGGAAGGAAAAACATTGGAAAAGAAAATTCCTGTTTTATTAGGTC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 113125-113684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIDF010000005.1 Anoxybacillus rupiensis strain DSM 17127 Ga0373222_05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 113125 30 100.0 37 .............................. CATTGTATTCTGAAAGACAACGGATTGATACAAGAAA 113192 30 100.0 35 .............................. AATCCAATTTCGCTTTTCAAATTTCCTTCTACGAA 113257 30 100.0 35 .............................. AAGATCAAGTAATTGGCACGATCAAAGAAAAATTC 113322 30 100.0 37 .............................. CAAGACCGCACACATTGGTATCAAGGCGTTCATCTGT 113389 30 100.0 38 .............................. TGGAATCACCAACTTTTGCCCAGGATAAATCAGGTTTG 113457 30 100.0 35 .............................. GCCACTCCGATAAAATAAAGGTATCGAACGGTATC 113522 30 100.0 37 .............................. TCGAGATGATGTCCGATTTCATGAGCAATCACTTGGA 113589 30 100.0 36 .............................. AGGAGTAAATAAACTCCATCAACAATGGCGTTATTC 113655 30 90.0 0 .................A....G..A.... | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 98.9 36 GTTTTTATCTTAACTATGAGGGATTGAAAC # Left flank : GCTCTCGTTTTTGTTCACGCTTCAATTATGTGCCTCCTTTCGAGGGTATAGGAGTATTTATCATTAATTATAAATACCGACCGTCGGTTTGTAAATAAAAAATTTTATTGGCCAGATAAAATGATCGATTGTGAGATTCCGTGTTGGCATGATGATGATTCGATTGAAAAGAGATAGGCTCGAGCCTGTTTCCTTAAGTGCAGAATTTTGGAGAGGGATAACTGAAAGGGGGAATCTATTTCAGAAAAACGGGGATAGAACACGTATTAAAGAAATTCAACTTTTAGGAAGTTGGTGATTACGTGCGCATCATAGATCCAATATCTCAACTGTCGTCGATCTCCAGTAGCGTCAAAAACCCGGGGGATCGACGACAATTTTCTAACCGCCAGAATTCCTACAGCGATCAGAAAAAGAAGCTATTGCTCGAATTTTAAGATAAGTTTATAATAAAATTGTATCCATTTTCCAAATGTTGATTTAATCATGGATTGTGGGGG # Right flank : CAACTTTGCATTTTTCATGATCTCCACCGCGTTTCTGAAACCATCTCACCGCACGCGAAAACATAGACAGATAAGGGACTTCGCCAAGCCCACAGGCCCGTTGAAAACAGCGAAAACGTTGCAGGATGCGTACAAATTTTCTCAAGGAATTAATAGCAAAATAGGTTTTCAAAAAGAAACATTTCAACAACGATTTTTTTCGACACTGGCGATCTTCCTGTCACGTACGGTGTTTCTGGCAACGACAGAGAGTCAATATATCGAAATAAGGAGGCTAAAAGTGGATTGATTTCATAAGACCATGCATGTTCGCTGTTCCAATTGGAAATCATGATCGTGTCCACCCCTTGGAGAGTTATTTTTTGTCACTGTATATGATTTCCAAGGTGGTGGATTTTTTATGTGCATTTATGCCAACACGTTCATTAGTTAAGAAAGATAATGTTAAATGAATGATTAAAAAAATATTAAAAATAGATAAAAATATATTGAAAAAAATG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //