Array 1 518248-520396 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDBT01000003.1 Listeria monocytogenes strain ICDC_LM0725 LM0725Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 518248 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 518314 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 518380 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 518446 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 518512 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 518578 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 518644 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 518711 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 518777 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 518843 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 518909 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 518975 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 519041 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 519107 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 519173 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 519239 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 519305 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 519371 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 519437 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 519503 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 519569 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 519635 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 519701 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 519767 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 519833 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 519899 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 519965 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 520031 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 520097 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 520163 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 520229 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 520295 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 520361 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 33 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //