Array 1 409007-409180 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVJN01000021.1 Magnetofaba australis IT-1 contig00021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================= ================== 409007 34 97.1 39 ..................C............... TTTAACCATATCGGACCTGAACTTCTGAACGTTTGGGCA 409080 34 100.0 33 .................................. TTGCGCCTATCAATACGCTGGGGCGTTTGGACA 409147 34 97.1 0 ................................A. | ========== ====== ====== ====== ================================== ======================================= ================== 3 34 98.1 36 ATGAAAGATATTGGGGCTTCGCCCCAAACCCCGT # Left flank : CCACAGGCAAAAGCGCTTGACCGCAGTTGCACCCCAGTTTGGAGAGTATGGATCATGACGGAGATTCCCCGCGTCATCGTCAACAAAATGCTGACCCACGCCCAACGCGCCCTGCCCAAGGAGTGCGTCGGCCTTCTGAGCGGCGCCGATGGCCGCATCGACGGCTGGAAGCCGCTACCCAACGTGTTGGATGACGAACGCCGCTTCTTCGCCGACCCTCAAGCCTTGATCGACGCCATGCGCACATTGCGGGAGGAGAGCCGCGAGTTGATGGCCATCTATCACAGCCATCCCACCGGCCCGGCCATGCTCTCCCAAGCCGACATCGAACAGGCCAACTATCCCGACGCCCTCTATCTGATTGTCTCCCTCGGGGTGAATGGCTGCCTGGACATGCATGGATTCCGTTTTGAAAACGGTCAGCCCCAGGAAGTGGAGATCGCCATTACGGAATGAATTGGTTTGGAGAGTGTCTGATTTGTCGTAATGCGTTTTGGGCG # Right flank : TGAGGGCTCCGCCCTCAACCCGCCAGGGCGCCGCCCTGGACCCGGCAGGGCTCTGCCCTGCACCCGCGGGGCGCCGCCCTCGACCCGCTGGGGGCAGCGGCCCCCAGACCCCGGAAAATCACGCCATAAATGTCGCGATTTTCCACCTTTTACTCCGTGCCTCCACTCGGCCTGTTGCATGACTCTTCTACCTGCTTCTACAAACGCTCTGACTCAGCAACTCAGTCAATATGACGCCCTTTTGGTCGCCTTCTCCGGCGGCGTCGACTCCGCCCTGCTCCTAGCCGAAGCGTTGAACGTCCTTGGCCCTGCCCGCGTCCTCGCCGTCACCGCCGTCTCCCCCACCCTGCCGCAACGGGAGTTCCAAGCCTGCGCCGATCTCGCCGCGCAACTGGGCGCAACCTGGATTCAACGCCCCACCGACGAACTGGCCAACCCCGCCTTCGTCGCTAATGACGGCCAACGCTGCTATCACTGCAAGAGCGCCCTGTTCACCCTGT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAAAGATATTGGGGCTTCGCCCCAAACCCCGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.20,-11.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 420063-424976 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVJN01000021.1 Magnetofaba australis IT-1 contig00021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 420063 28 89.3 33 CC.G........................ TTGAACAGCGCGCGCACATATGCCGCATCGGCG T [420067] 420125 28 100.0 33 ............................ CTGGCGCTGATGAAGGGCGTTAGCGCCATTGAA 420186 28 100.0 33 ............................ GTCGTCGTAGCCGGGACGCACCGCGATGACGCC 420247 28 100.0 33 ............................ CGCGCTTTTCTCACCACCACAGGCCCGATAGGC 420308 28 100.0 33 ............................ GCCACGCCGGGCGCGACGGTGGCGAGGGTCTTT 420369 28 100.0 33 ............................ GACGCTTCCGTCCTGGCTGAGGCCGCACGGGCG 420430 28 100.0 33 ............................ GCCTTCGGCAACCCGACCAAAAACAGCGGGCGC 420491 28 100.0 33 ............................ CTGGACTGGCTGGCCTTCGTCAAACCGCGCCTG 420552 28 100.0 33 ............................ ATTCCCACCAGGCAGACACCGATGGAGTTGGCG 420613 28 100.0 33 ............................ AAACTGGCGCCAAGAAATCTTGGCCCCCTGTCA 420674 28 100.0 33 ............................ TCCAGCACAGTGCCGGTGGCCCATTCGTGGAAA 420735 28 100.0 33 ............................ CGTTCCCCGATACTACCAATGATACACCGTGGG 420796 28 100.0 33 ............................ CAACGCCTTGGCGCCGCCGAAGTGGGCGTAGAT 420857 28 100.0 33 ............................ GGCGTGGGGTATCTGGTGCGCATCGAGGCGCGA 420918 28 100.0 33 ............................ TCATTAAACCGGGTCGATCGCTAGATATTGCGG 420979 28 100.0 33 ............................ AAGATCGCCAACGTCCTGTTGCAGTTGTGTGAC 421040 28 100.0 33 ............................ CTCTCCGCGCTGCCCGCCCAGTCGGTGACCGTG 421101 28 100.0 33 ............................ TCGGCCATGGCCGACGTGCGCAAAGTGGTCAGC 421162 28 96.4 33 .........A.................. TGGGCGGACGCGCCGTGCTGCCCACTGGCGGCG 421223 28 100.0 33 ............................ TGGCCCCTTTGAGGTCGCAGGTGACGCGCCCGC 421284 28 100.0 33 ............................ TGCTCAATGTTTGGTGAGCGCGAGCAGATCAAG 421345 28 100.0 33 ............................ GAAGCCCGCGCGCTCCACGCCGAAGCCGCCCAG 421406 28 100.0 33 ............................ CCTCGTAACGCTCCTTAAGAAGCTCCAAGGAGA 421467 28 100.0 33 ............................ AGCACCGCGCTTGCCGTTGTCCCTGATGATGAC 421528 28 100.0 33 ............................ ATAATCTTGGCGGTGCGGGTGGGCTCGCCCAAA 421589 28 100.0 33 ............................ CGCGCAAGACCGCCTCGACAGGGGTGATGTCGG 421650 28 100.0 33 ............................ TATGTATCCCTGGGCGGCGCGGTGCGGTGTCTA 421711 28 100.0 33 ............................ TGATCGACTATCTTCGCCGCGGTGATCTTTCCA 421772 28 100.0 33 ............................ TGGGCGGACGCGCCGTGCTGCCCACTGGCGGCG 421833 28 100.0 33 ............................ AGCCGGACGCTAGCGGCAAGCAGGCTGGAAATA 421894 28 100.0 33 ............................ CCTTCGGCGTCGGTCAACTTCTCAATCAAACCG 421955 28 100.0 33 ............................ TCAAAGGCCGCAACGGCGCATCAAGGCCGTCGA 422016 28 100.0 33 ............................ GTCAAAGCCCACTCCCAGCAGTACGGCTATCGC 422077 28 100.0 33 ............................ TGAGATTGAGCGCAACGTACGCGCTGGGGCGGC 422138 28 100.0 33 ............................ GCCTGTTTCACGGTCGCCCCACGTATTCCAGCG 422199 28 100.0 33 ............................ TGTCGCTGGCAGGTGGGCTTTTTGATCCGTCGA 422260 28 100.0 33 ............................ GCTTGCCCGCCATCCTGGCGGGAGAGATTCAGA 422321 28 100.0 33 ............................ GACGAGACCCGCGCCACCCTGTTTGGCGGCGCG 422382 28 100.0 33 ............................ TTGACCGGCTGCTCCAGATGGATGCGCGCGCCG 422443 28 100.0 33 ............................ GTCGCGGATCGCCGTCTGTCCAGGCCACGGGGC 422504 28 100.0 33 ............................ CAGGTGGGGCGACGCAAGCAGATCGCGCCGCGC 422565 28 100.0 33 ............................ GACGCCAAGAAACGCCAGGAGTGGCAACGCGAG 422626 28 100.0 33 ............................ CGAGCCCAGAACCCGGCCAGTTCGATGCGGCCA 422687 28 100.0 33 ............................ GACTGCGTCGAGGTGTTCAGCTCCAACACGAGG 422748 28 100.0 33 ............................ CCCATACGTCGATGGGGGCGCAGAGGGTTTTGA 422809 28 100.0 33 ............................ ACCTGGAAGATCCGTTTTGGGGACAAACCCAAG 422870 28 100.0 33 ............................ CTCCTGTTGACGCAGTTGCCGCGTCTTTCCCGC 422931 28 100.0 33 ............................ CAGAGAGACCAAGGCAGGATCACAGATAAGCGC 422992 28 100.0 33 ............................ CCGGTGCTGCTGTCCTCAATCGACCATGCTGCG 423053 28 100.0 33 ............................ AATGATCGATTCAAGCTTGATGTCCTTCATTGG 423114 28 100.0 33 ............................ GCGATCTATGGGGCGGGAATATGCCGTCTGAGC 423175 28 100.0 33 ............................ AACGCGCACCTCCTTTTCAAGATCCCACTCCCT 423236 28 100.0 33 ............................ GAAACCTGAAGAAAACAGCTTCCCCTTTGTAAA 423297 28 100.0 33 ............................ TCGGCCAGTCTTCGGACGGCTCTTTTTCGCCTG 423358 28 100.0 33 ............................ AACGCCGTTGATATGCACGCTGATATCAAGCAG 423419 28 100.0 33 ............................ TTGACCTGTCTCCGATGGCGGCATTCAAAGGAC 423480 28 100.0 33 ............................ GACACCAGCAACATGGCGCGCCATCTGAAGAAA 423541 28 100.0 33 ............................ TACCCTGTGCGGGGTCTGGCTTCCTCTCTGAGC 423602 28 100.0 33 ............................ CTGGCGTCGATGCCAGCGCGCGCGGCAATGCGT 423663 28 100.0 33 ............................ TATATCGCGCCAAACGCAGGATCAGCGGTGATG 423724 28 100.0 33 ............................ GAGGGGTGGCCGGACGGGGCGCGCGAGGCCGTC 423785 28 100.0 33 ............................ GACAGCGTCGGCGTCCCCAGGGTCGGCCAGTCG 423846 28 100.0 33 ............................ GAAATTCCTATCTTTTGGGGATAACGTCTCAAC 423907 28 100.0 33 ............................ TACCCCAAGACCGCCGCCGCGACATCTGCCGCA 423968 28 100.0 33 ............................ CGATAAACCCGGCGAAGATCGCGCCGTTGCTAA 424029 28 100.0 33 ............................ TTGGACCATACCGCCTGACCCATCACCGCCACA 424090 28 100.0 38 ............................ GCTTGAGCCCAGCCCCAGCGCCGCGACAGGCAAAACCT 424156 28 100.0 33 ............................ AGGCTGGTCTACCGGGGGGCTTCGAGTCGCCGC 424217 28 100.0 33 ............................ TTCACACAGCTGGTGATCGGTGCGCGCCCGGGG 424278 28 100.0 33 ............................ ACCGTCACCCCGACATGTGGCGACGTCCTCCCA 424339 28 100.0 33 ............................ TCACCAGTATGATGCCGGGTCAGAGCCTGGAGA 424400 28 100.0 33 ............................ GGGGCGGCGTGGCCGCTATCGGATACGGCATCG 424461 28 100.0 33 ............................ AGATTGTTCCATTGCCATAACGCGCAAAAATAG 424522 28 100.0 33 ............................ CCGCGTTGATCGGTGCGCCCGTATTCGAGAACA 424583 28 100.0 33 ............................ TACAACCGCAACTTCCTGGCGGCGCTTGGCCGC 424644 28 100.0 33 ............................ CCCGTGGAAACTGGGGCATAGCGTGGCAGGATA 424705 28 100.0 33 ............................ CAGGCGGGCGCTCCTCGGCAACTCAAAGATATA 424766 28 100.0 33 ............................ AGGGCGGCCAGGGGATGCGGCGTGGGGGTGGTC 424827 28 100.0 33 ............................ CATCGCTGAATGCGCAAATCCTGGAAATCCAGA 424888 28 100.0 33 ............................ CCAGCGGCGTCACGAACCCCGGCATTAAAATCA 424949 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 81 28 99.8 33 GGTCGATCCCCGCGTGGGCGGGGGAAAC # Left flank : ATGGGAATAAACAGTTCAGGATCCGACGCATCCAACAACACTCGCAATGCGCCATCGAGGATGACATAGAGCGCGTCATTGATTTCGCCGCGTTGGAGAATCACCGCATCGGGCTCCACCGTCATGAGACGACAGGGCGCCAGCACACGCAGCATCTCTTGCTCCGGCACGTCCTGGAACATATTCAGATGGCGCGGCAAACCATGCGGCCAAGGTTGAGAGTCACAAGTCTCTGAATTGCCAAGACTCTGGATATAGGAGCCAAAGCTAACGTCGAGCATCGTCTGTGAGTGATTTTGCATGGATCAGGGGAAGTATGAGGAGGAGTTGTGCAGGGTCTTATGTGAGCCAATAAATTTTATCAAACGCAAATAAAGCGAAAATTATAGGGCAAAATGGGGAAATCAGGCAAGTTGTGGCAATCTTCGCCCCTCCCCTCCCCCAATCCGACGAAGCGTTGGTTGTGTGGAAGGGGGAGACGACGAGGTGGGGGCGAGCTC # Right flank : CTCTAGGTTATAAAACCCTGTTTTTACTCAATTGTCAAAGATCATATGGATTTATGTCAGAATAAATCCACTCTATTCCTGCCCCTCCTCCTCGCCCAATGGCGGGCGGCGGGCCAGAATCACGCCATCATAATCCACCAAATCCACCGGCGGTTCGCCCAATGTTTGGATGCTCACTCCAGTGGGCTGGGCGCCGTCGGCCCAAATCATCACATATCCGGCGTCGGATTGCGGATTGAACCAGTCGCTCAACACCGCCCAGATGCGCCCGCGCACAGCGGCGCTCAAACGTGGCGCCACATAGAGCCCGGGGGCCGCCTCCAACATGCAGGAGGCGAGGAATCCCCGGCAGCGAGGCAAGGCGTTACGAGTCGCCACCACCGTCATGGGCATTGAACAACTCCTTGATGCGGTCGATCATGGCGGGAATGAGTTTGTGTTGCCGGAACGCCTGCGCCGCCTGCTTGCGCACTTGGCGTTCTATGTCGAGTTTGGGGTTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGATCCCCGCGTGGGCGGGGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA //