Array 1 751103-750894 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074346.1 Pasteurella atlantica strain NVI-9100 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 751102 28 100.0 32 ............................ CGATGGTTCTAAAGAAGAATTGAAGGGGTGTA 751042 28 100.0 33 ............................ TGAGCGTTATCAATTAGAACTGGCAAACCCACA 750981 28 100.0 32 ............................ AAGAAAATTATCATTGGTGTTGGAGATTGCCT 750921 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTTAACCATCGAGTAGATGGCTTAGAAA # Left flank : TATGGAGATAGAATTACCAACTCAATGGAAAAAGCCATCAGCGAAACCCAAAGACGTAGAGCCAAACAGCAAGCTCACAATGAAAAACTGGGTATTACCCCACAAGGTTTAAATAAAAAAGTCAGTGAATTGCTAGATATTGGGCAAAGTAATAAAACAAAACGAAATAAAAAATCTGCAAAAGTAGAAGAAAATCCTACCGCTTATATTCCAAAAACTCGCAAAGCACTAGAAAAAGATCTCAAAAAATTGGATACCGAAATGCGAGAGTTCGCTCAAAATCTTGAATTTGAAAAAGCCGCTGCCACAAGGGATAAGATTAAGCAGTTAAAAGAGTTTTTGTTGATGGTGGATTGATTGCATAAAATACCCTTTATTGTTGACTATTTTAAAATTTCTTTATTATCAATAAGTTACAAACCCTGTTAGAAAAAGAGTATTTTTGCTATTTTTTCACTTCAGATATTGCAGAATCAGGATTTTGCGAATAAAATCTCTAG # Right flank : GAGTAGGATATGAAAAATCACTTACATAATTCAAAACTCAAACAGATAAAAAACATTCTTAATAATAATCTTAAAAATACTATTGAATTTCACTTTAAAACTGCTTAAAGTTACGCTTAATCACATAGTAATAAATAGAAAAGGAAAAAATAATGGATCTTAGTTATATGGCAAAAATGCCACAATCTGAATTTACTGCTCGCCGTCAGCGTGTATTTGAACAAATGCAGGATAATTCCGCATTAATCGTTTTTACAGAAACAGAAAAACGTCGTAATAACGATTGCGAATACTTATTCCGTCCAGATAGTTATTTTTGGTATTTAACAGGCTTTGCAGAACCTCAATCGGCTCTACTTTTAATTAAACAACAGGGTAAAATGCAAAGTATTCTTTTTCTACGTGAAAAAGATCCATTAATGGAAACGTGGAATGGTCGCCGTTTAGGTACTGAAAATGCACCACAAAGCTTAGAAATAGATGAAGCTTATAACATTGAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCATCGAGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 804088-804355 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074346.1 Pasteurella atlantica strain NVI-9100 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 804088 28 100.0 32 ............................ CTTATTTTAGAAATTACAGAATAAAAAAAGAA 804148 28 100.0 32 ............................ GCTATACTGAGAAAACGGCGATCTTTCGATCT 804208 28 100.0 32 ............................ TCTATTCTAAGTTTCCAAGAGTTGTTTGCGAC 804268 28 100.0 32 ............................ CAATATCCATCGTATAAATCACGCTTTGACAA 804328 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTAACCATCGTGTAGATGGCTTAGAAA # Left flank : TTAAAACTGATAGATGATGTAACACTTAGTTATTATCTTACTGGCGAAAATCATTTTGTGATAGGTATAGGTACTAAGGATCTTTATTATTATGAATTAACCTTTAAAAATAAAACAATAAAGTTTAAGAGCGTAGTTCCCGTTGTCGCACTTCCCGACAGCCCGAATTATAAAAATCTCATAGAGTACAATGGCAATACTTACCATTTAGAGTAAAGCAACTAAAAAATACGCTATAAAATTAACGTTACAGCGTAATGATGAAATGGAAGAATATATCTAGTTTTTGGTAAGGTAATGAAGATTTAAAAGGATATTTGCAAATTTTTGATAACATCATACCGCTTGTATCTCCTATTTACTCAAAATACCCTTTATTTTTAGCTGTTTTAAAATCACTTTATTATCAATAAGTTACAAAACCTGCTAAAAAAAGGGTATTTTTGCTATTTTTTCACTTCAGATATTGCAAAATAAGGGATTTATCAATAAAATTTCTA # Right flank : AACTTTCACAATCTTTTACGGATGCGTTTAAAAAGCAACTTTCTAACTATCCGCAACAAATTCTGAAACATTTAAAAGAAAATAAACTTAGATGTGTACTGTTACGCTTAACGCAACAATCACAGCCACTTCTCACGGTTTAAAAGCTGGAGATTGTATTAAAATCAAAGAATTAGGTTCAATAAGGGGACTGCTTAGATTCAATAGCGAAGTGCAACATTTCGGCAATAAAGAGATGATTATCGGACAGCTCAAATATCACACTTGCTCGCTTTAATAGACCGAGACAGCAAAAGCGAACTATCAAAGCTACAAGATTTTGGAATAAATCAAGTTTTGAGAAAGATGAGGACGAAAATGATGGTAGTGCAGAGTTTTTAGCCAATAGATAATCAGTAAATTGACTAAAAAAGCAATTAAGTATATACTTTGTATAAATTAGATACTGAAGGGGAATTTTATGCAAATTCAAATTAAAAAATGGGGTAATAGTGCAGCGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 825900-826107 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074346.1 Pasteurella atlantica strain NVI-9100 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 825900 28 100.0 32 ............................ TTGTGAAAGTACTGTATCACGCTTAATTCTTG 825960 28 100.0 32 ............................ ATTACAAAGACAAGCGAGGGCATTTTAAATGT 826020 28 100.0 32 ............................ AACGGCGGGGCGTTTATTTTAGCACCGCAGAA 826080 28 89.3 0 ..T.........A......A........ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTGAACCATCGTGTAGATGGCTTAGAAA # Left flank : CTCCAAGTTTTGCCGATATTTTTTATGGCAACAGCCTAAATAATCAGCTGCTCCCCGTTAAATTAACCCATCAAGAAGTCGATGATTTATTTAATTATGTGACTAAAAATAAAAATGCTAAAATTACCGTTGATCTAGAAAATCAAACCGTGACAGCAGGAACACTACTCTATCATTTTGAAATTGACTCTTTCCACCGTCACTGTTTACTTAGTGGGTTGGATAGCATTGGCTTAACGTTACAGCATAACGATAAAATTGAAGAATATGAAAAAAATATCCCTAGTTTTTTAAGGTAATAGCAACTTAAAGTAATATTTGCAAATTTTTGATAACATCATACCGCTTGTATTTCTGATTTATCAAAATACCCTTTATTTTTAATGGTTTTAAAATTACTTTATTATCAATAGGTTACAAAACTAGCTAAAAAAAGGGTATTTTTGCTATTTTTTCACTTCAGATATTGCAAAATAAGGGTTTTATGAATAAAATCTCTA # Right flank : ATAAAAAAAGGTCGCCATTATGACGACCTTTTTTATTATTCTGTTTTATCAATTGGTGGAAAATCTCGTTGTACTTCACCTGTATAAATTTGGCGAGGACGTACAATTTTAAATCCATCTTCTTGTTTATACATTTCTTTCCAATGTGCTATCCAACCAACCGTTCTTGCTAATGCAAACATTACCGTAAACATTGAGGTTGGAATACCAATCGCTTTTAGGATAATGCCTGAATAAAAATCAACATTTGGATAAAGCTTGTGATCAACAAAATACGGATCTTCTAGGGCAATACGCTCTAATTCCATCGCAACATCTAAAATTGGTGTAGAAATATTAAGTTCACTTAACACTTCGTGACAAGTTTGACGCATTACTTTAGCTCGAGGATCATAACTCTTATACACACGATGCCCGAACCCCATCAAACGGAATGGGTCATTACGATCTTTTGCTTTGGCAATATATTCAGGAATACGATCTACAGTACCAATTTCTTC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 831884-832151 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074346.1 Pasteurella atlantica strain NVI-9100 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 831884 28 100.0 32 ............................ AATATGGTATTTCACGTTTACTTGAAAATATA 831944 28 100.0 32 ............................ TTTAGCCCTAAAAACCTTAGAAACATCACGCA 832004 28 100.0 32 ............................ TTTTTGTCCCAAGAAAGTAACTGTAATTGAGG 832064 28 100.0 32 ............................ TTCTTGCAGAAGTTGCCACTGAAACGGCTCGC 832124 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTAACCATCGTGTAGATGGCTTAGAAA # Left flank : CAACGGTAGTTTCAACTTCAACACGTAACTTCCCTAACCGATTAGGACAAGGTGCAAATGTTTACCTCTCTTCTGCAGAACTTGCTTCTGTAGCCGCCATTTTAGGTAAATTACCAACCCCTGAAGAATATCAATCTTATGTAGCAAATTTAGATAATGATAAAGAAGATACTTATCGTTATTTAAACTTTGATAAAATAAGCAGTTATACCGATAAATCAAATACGGTTATTTTCCAATCTGAAGTATAATCTCTCTCAATAAAAGCCATATTTTTCATAAAATATGGCTTTCTATTTCAAATAGTTGCAAATTCTAAACAAAATCATACCGCTTGATCATTAAAATATTTTTATAGAACATAAAAACACCTTTTATTTTTAGCTATTTTAAAATCACTTTATTATCAATAAGTTATAAACACACTCAAAAAAAGGGTATTTTTACTATTTTTTCACTTCAGATATTGCAAAATAAGGGATTTATCAATAAAATCTCTA # Right flank : ATCTTAGTAAACAAACTCGCTTTAAAAGTAATAGTTAACCATATGTACGTTGTACAGTGAGGATACATAAAAATCTTATCTCTATGCTTAGAAAATAAGAAAGATAAATTTGTAAATTTATCAAGTAAAACTTAAAAACATCACTAGAAAAAATCTCTATTTTCAGGTATTCTTACACCAATTTTATTTTAATGGTAGTGTTAATAAAACTACCCATATCTACATCTAGGAGATTTTATGAGTGAAAAGTACATCGTCACTTGGGATATGTTCCAAATGCACGCTCGCAAGTTATCAGAAAGGTTACTCCCTGCATCACAATGGAAAGGTGTTATTGCTGTTAGTCGTGGCGGATTATTTCCTGCTGCAGTTATTGCTCGTGAACTTGGACTTAGACACGTAGAAACAGTATGTATTGTAAGTTATGAAGATCACTATAAACAAAGTGACGAGTTAAGAGTACTACACGCACCAGAAGGTGATGGAGAGGGTTTTATTGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 1066590-1066916 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074346.1 Pasteurella atlantica strain NVI-9100 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1066590 28 100.0 32 ............................ CAGCCTTTTTGAAAGACTGGATACTTGGGAAA 1066650 28 100.0 32 ............................ GCCTCGAAAGCACCCTGCGGTAAATTATCACC 1066710 28 100.0 33 ............................ ACTGGGTCACCACATTTTTAAAAGTTTGCGAGA 1066771 27 82.1 32 A..-.......A......A.......G. TTTTTTAGACAGGGCATGCCCTGTCTCTACGG 1066830 28 71.4 32 .A.T..T..T.AA..A..A......... TATTAAAGCAAAATTTTCAAGTATAAGAAACT 1066890 27 75.0 0 .G.T....C..AA........-..A... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 88.1 32 GTTAACCATCGTGTAGATGGCTTAGAAA # Left flank : ATCTCTGAATTAAATGATACAGAACTTCAAAAAGTTTATCTTGCGGTATCTTCTAAAAAACGACGCTAAGGTATATAATTTAAATGCTATTTAAACGCTTTTAAACGTTCATTCTAATTTCGCAGTTTTTGCGGTTTAAATTTAAGGTTTTTATTATTTTTTCGCAGTTTTGGATTTTTTGATGTTTCAACAATAAAAAAGGGGCAAAACTACCGCAAGCCCCTTTCTTTCTATGTTTTTACCCACTAGATCCCGTTAATTTTTACCAATTCCCACATTTCTTTTATTTTCTTAGTTTTAATGATCTTCTACAATTAGGCTATCAAACACCTCTTGAGGTAAAATCTAGATTTGGGTGCGTTGCACTTCAAACTTGAATCCGCCCGATTTTAAAATCATTTTATTATCAATAAGTTACAAAAACTATCAAAAAAAGGGTATTTTTCTAATTTTTCATTTCAGGTATTGAAAAATCAGGGATTTATGAATAAAATTCCTAG # Right flank : ACGTAGGAACAGGGCATGCCCTGTTCAGCTAAACCACCACATAATCATTTACAATTAATTTACACCTAAAAAATGACTCTCTGTCTCTAAAAATTTATTATTAAACCCTATTTAAATGATACCAGTGGGAAAGTAATACACCAGTATTCACCGCAACATTTAAACCATTCTGCAAAGGATTAACAACTGAAAGCTGTACCGTAATATCTTCAGCATATTCAATCTCATTAGATATTACTTCACTTAATACAAAAACAATTTTATTACCTAAATTAATTTTAGGTAAAAGTGAGGCTTTTTTACTATGTGTTAAATGCACAATTTGATAGCCTGCTTTTCTTAATTGAGTAAAAGCGATCTGTTTATGCTTAGTTTCTAGCATTCTAATAAACTCAAATCCACCCTCAGCAACACGTGCTGCACTACTTGAATTGAGCTTATCAGTATTCTCGGTAATCACACCTTTAATTCCATAAAAGCTACAAGTTCGAATAATACCG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 2050169-2051195 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074346.1 Pasteurella atlantica strain NVI-9100 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2050169 36 86.1 30 .......T.......T......T.T.G......... TTCTTATCGAAAGTTTGAGTGTTTATTTTA T [2050181] 2050236 36 97.2 30 ...........T........................ ATAAACGGCTTTCAGATGGCATTGTTCTAG 2050302 36 100.0 30 .................................... CAAGCGTGGTGTGAAGTACATCGTGATGAA 2050368 36 100.0 30 .................................... TTGCTACCATTTCTAATTGCTTGTTTCTGT 2050434 36 100.0 30 .................................... TTTTAGAAGTGAACAAACAACAGATGAAAT 2050500 36 100.0 30 .................................... ACAGGGTGTGCGACACAGCCACGAAATATA 2050566 36 100.0 30 .................................... GATAAAACCGCTCACGTACAAACAGCAAAA 2050632 36 100.0 30 .................................... AAGTGGCAGATGCAGCACACGAGGCGTTAA 2050698 36 100.0 30 .................................... ATATTGCAGCAGTAGTATTGCCATCTTGTG 2050764 36 100.0 30 .................................... CTAGCCCATCATTGATACTTTTAGCCAAAA 2050830 36 100.0 30 .................................... TTGTGTCATTGTATTAATCCTCTGTATTCT 2050896 36 100.0 30 .................................... CTTAAAGAAATGAAATAATCTTCTAACGAA 2050962 36 100.0 30 .................................... CGCTGATTGCTTGTGTCGTGACATTTTTTA 2051028 36 100.0 30 .................................... AGATATTGCGGATTATGCAATTTTAGGCGG 2051094 36 100.0 30 .................................... TACATCATAAAAAATTACCCCTTTCTACCA 2051160 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.0 30 GTTGTAGCTCCCTTTCTCATTTCGCTATGCTATAAT # Left flank : AAGAAAATTTATCAATCTACGACAGAAGATGAAGCCTTGCAGGAATTAGAGAATTTTGCGAATACTTATGACGATAAATATCCGCAAATATCACGGTCTTGGTATAAACACTGGGATAACCTGAATACCTTGTTTAACTACCCTGAGGATATAAGGAAAGCCATTTATACGACTAATGCTATTGAGTCTGTAAATAGTGTTATTCGCAAAGTCATCAATAAGAGAAAATTATTTCCAACGGATGACTCTGCAAAAAAAGTCGTTTATCTGGCTATTCAAAATGCCTCTAAAAAATGGACAATGCCAATTAGAGACTGGAAATTAGCACTCAATAAGTTTATGATTGAGTTTGATGATCGCTTAGCTGATTATCTTTAACTAAAGTGCAGTTACACAGTTTAGGAGACAGTCTCAATTCTGTGTCGAGACTAGCTATTTTTATAGTCTCTTTGAACTCTTTTTTCATTTAACAGGAGACAGTCTCTTTAACATTGGAAACA # Right flank : TCTTGGACATCTAAAGCCTTTTAAAATAAGGCTTTATTACTATTATATTCATTATAAAAAACACGGATAAATAAGTATTTATCCGTGTTTTTTATGATTTTTTTCTAATAAAGATCTGGATATTTAGCTATAAAAAATGCAAAAAATAAAAATTTATCAGAAATGATTGTTTAAAATAACAGCATTTGATTTGCGTTTACTTTTTTTTCTTGTGTTTTCAATTCTCCTAATAGTAGTTGCATACTAGCAAACTGTTTTTCTGTCACCTCTAAGCAACGAATAGATCCCTCTTCAGGCAAGTTTTGGCACAATCTTTTATGATGTTTGGTTAATGAATCTCTTCCTCTTACTATACGAGAATAGACTGATAATTGGAGCATTTGATATCCATCTTTTAATAAAAATTGACGGAATTGATTGGCAGCTCGGCGTTTGGATTTAGTTGTGACGGGTAAATCAAAAAAGACTATTATTCGCATAAATTTAGCCTCACTCATAGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCTATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //