Array 1 8074-7800 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGNG010000115.1 Streptomyces sp. SID9124 contig-2000007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 8073 30 100.0 31 .............................. TCATCGACTTCGACCTGATCGAGTCCCAGTT 8012 30 96.7 31 .............................C ACCGCACCACCGCCGTCGTGTTCGCGGCCGG 7951 30 100.0 31 .............................. CTCGCACGAACCTGCAAGACCGCCCCGGGGG 7890 30 96.7 31 .............................T CCCGCTGTGCGATGAGGTCGGAGAGGTGGAC 7829 30 96.7 0 .........................C.... | ========== ====== ====== ====== ============================== =============================== ================== 5 30 98.0 31 CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Left flank : CGGCGGTACGGACGCCTACGAGGCCGAGGAGCTTCTCTGGTGACGGTGATCGTGCTCACCAACTGCCCGGCCGGCCTCCGGGGCTTCCTCACGCGCTGGCTCCTGGAGATCTCGGCGGGCGTCTTCATCGGCAACCCCTCGGCGAGGATCCGCGACGTGCTCTGGGCGGAGGTCAAGGAGTACGCGGACCAGGGCCGCGCCCTGCTGGCCCACACCACCGACAGCGAACAGGGCTTCACCTTCCGCACCCACGACCACAAGTGGCACCCCACTGACCACGAGGGCCTCACCCTGATCCGCCGCCCGAGCGAGTCGGCGCCGAAGCCCCCGAAGCCGTCCGACGGCCCGAAACCCGGCTGGAGCAGAGCGGCGAAGAGGCGGCGCTTCGGGAGAGGGTGAGCGGTTCGACCTATTTTGGGAGCGTTTGGGGTGCTATGCCGATCTCGGTGAAAGTGGTACGGAACGGCTCTGCCGAGCGGTAAACATGCAGGTCGCGAAGT # Right flank : TCGTCTACCGCCAGAATTGCAACTTCATCTGCTGCTCCCCGCACCCGCGGGCCCCACCCGGCATGCGCCTCCCTGAGGCGGGCCCCGTCCGCCCCCTCAGCCCACCCCCAACGACTCCCCGAACCCCACCGCCAACGGCATCCGCAGCCCCAGCGGTGGCGGAGCCGCCAGGGCGTCCGTTACCGGGCGGGCGTACGCGTGGCCGAACAGGGCGCCCCGTACGAAGTCGGCGGCCAACGCCGTGACCTCCGAGCGGTGTTGGCGCAGGGCGTGCCCGTCCGAGTGGACCTCGAAGCGGCAGGTGTCGCGGTTGGCCTTCTTGGCGCGTTCGGCGAGGCGGAGGGACAGCGCCGGGTCGCAGCGCGTGTCGTTGGTGCCGTGGGCCAGCAGGACCGGGCGGCCCACCAGGTGCTTGACCGGTTCGAGGGCGGCCGACGGGTCGGCCGGGAGCCAGGGGGCCAGGGCGAGGACCGCGGTGACCGAGGGGTGGCCGCCCGCGC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17765-18525 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGNG010000115.1 Streptomyces sp. SID9124 contig-2000007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17765 29 100.0 32 ............................. AGCCTGCTCCTCGGCGACGGCGCCGACTGGAA 17826 29 100.0 32 ............................. CCCTTGGGGAGGTTCATTGTCTTGAGGTCGGG 17887 29 100.0 32 ............................. AGCGCTTGTCCAGCTTCGTGGACACGGCTTTC 17948 29 100.0 32 ............................. GAAACTGTCCCCAGGCGGCCACCGATGACCCT 18009 29 100.0 32 ............................. ATCAAGGGCCTCACCGCGCGCTGACAGGCCCT 18070 29 100.0 32 ............................. CGACGCAGCCGCTTCGGGGACATGGAATCGTC 18131 29 100.0 32 ............................. AGGTCTACCGCGTGACCATCACGCGCGTGTCG 18192 29 96.6 32 .........A................... CACACCAAAGCAAAGCCGTCCCGGCGGCGGGT 18253 29 96.6 32 .........A................... TTGGGGTTAGTGATACCAAAAAGGTGGCCCGG 18314 29 96.6 32 .........A................... CCCCGGCGTAAGCCGCCTACCAGTGTCGAGGG 18375 29 96.6 32 .........A................... TTGCAGTGCGACGGCGGCTGTCTGAACGGCCT 18436 29 96.6 32 .........A................... GCGGCCGGGGTGTGGACCGCGACGTTGGCCCG 18497 29 96.6 0 .........A................... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GGGCGTCGCCTTGCCGATGTCGTGGACCCCGGCGAGCCAGACGGCGAGCCGCCGCCCGTCACGCTCCCCTCCGGGAAGCTCCGTACTGACGAGCGCCCGGACGTTGCGGGGCAACCACGTGTCCCAGAGCAACCCGGCGACCGCTGCGCTGTCCTCCATGTGCCGCCACAACGGCAACCACCCGTCGGTGCCCCTGTCGTGCTTGGCCCACACGGTGCGGGCGGGGGCGGTGAGCCTGGCACGGAGGCCGGGGTGGCTTGCGGTGGTCATGAATCATGAATACATGAGGAGGGTGAGGCGAGATGTTCATACGATGAAAGTTGCATAGGTCCAGGGGTAGTTGCCGTGAAGCTTCCATCGCGAGGGTGACTTACGGCTATAATGCCCTCTCGGATTGCGCGACTTGGTGAGCCGATGAGTAGCTTGGGGCCGTTATGCCGGAATCCGTGAAAGTGGTCAAAAACCCGACCCTCGCCAAGTAAAGCCGCAGGTCACGCAGT # Right flank : | # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : CTGCTCCCCACACGCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25725-24792 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGNG010000445.1 Streptomyces sp. SID9124 contig-7000025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25724 29 100.0 32 ............................. CAGATCGACCGAAAGGAAAGCGGCCTTCCCCT 25663 29 100.0 32 ............................. CCGTCGCGTCCCGCACGCCCACCGGGCCGGAC 25602 29 100.0 32 ............................. CCCCGGGGCGCGGCCGCCATCCCGGCCAGGAC 25541 29 100.0 32 ............................. GGGTCCGTGCATGCCGCCCGCTACACCGAGGC 25480 29 100.0 32 ............................. GCCGCCGAGGCATACGCCCGCGTCACCGTCCA 25419 29 100.0 32 ............................. CGGCGTACGCAGCCGCACCAGCCGCAGGAACT 25358 29 100.0 32 ............................. CTCGTGCAGTACGGCGTGATCCAGCGCGGCTC 25297 29 100.0 32 ............................. TCCCACTCCTGCGACCCTGGGTGACCACATGT 25236 29 100.0 32 ............................. GTGGTCTGCGGGGGCGCGCTGCTGCTCGACGT 25175 29 100.0 32 ............................. GCCCTCGGTAGCGACCTCGCCCGGGTGGCGTC 25114 29 100.0 32 ............................. GATGCCCGGCTGGTCCCCGCCCTGCAGCGAGT 25053 29 100.0 32 ............................. TCCAGCGCGTGAGCCTGCGACGTGTTGAGGAT 24992 29 96.6 32 .........................C... CCTTCCAAAACGTCGGTCCAGCTCTTCACGAA 24931 29 100.0 32 ............................. TCGACGCAGTCGCAGCTCGATGCGGCTACGAC 24870 29 96.6 16 .........................G... AGCGCCTTCGTGCTGG G,GCCC [24840,24845] Deletion [24826] 24820 29 72.4 0 ..........TGG.TC...A....AG... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.8 31 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GGTTCGGCTACGTCGAAGGGCATGACAGCAGCACGCTTCTCACGACCCAAAAGTGTTCAGTACCACGCTTCAACGCTGTGGCAGGATGCGCTCACAGGCGCTGAGCCATGAGGCCACCATGGGTCTGCTGAAGCAATCGCGAGGGGCCCGATGAGCACCGAACCGATCTGGCGCAGGAGCAGTTACGGCGGAAGTGGAGAAGACAACTGCGTAGCGGTCGCCCTCCACTTCACCGCATACGCCTCCGCTGCCCGCGCCTTCTGATTGGCCTCGGCGCCATGATCGGTTGGCCTACGCCACAACGCGGGACAAGAACGGTGGGAGAGCTGAGCCAGCACACAACGGCGAGCAAGCGCAAGGCCACCGTCCACATGTACTGCTGTCAGCCGTTAGGAAGCCGCACGCCGGACCCGAACTCATGGCACCTGTCCGCAATGTCGGACTCTGCGAAAGTGGTCAAAAATCGTCTGTCGGCTCAGCAACACCGCAGGTCGCGCAGT # Right flank : GAGCCAGCTCCATCACGCGGTTAGTTCCTTCCGCGGGCGCTGGTCGGCTGAGGGCCCGACGGCACCCAGCGCCTCTCTTCCGAACGCGAGGCGACGATGGGGGCGCTCATCTCGCATGCGCGCCTGGCATCCCATCCAACCGCGGCCAGCTGCGCGCGCCTTTTCACCACTCACACCCTGCGCCGCTGGGGCGCACTCACCGTGAGCGACGACGCCAGCCTCATCGTTTCCGAGCTGATGACGACCGCCTTGAAGGCGACCGGTGCGCCGCCAACCGCGCCAGCTTCGCACCTTAAGAATGAACCGCACCTGATTCACCTCGGAATCTACGGACACGGGCGCTCCGTGACCGTCCAGGTCTGGGACAACTCGCCGGAACGTCCGATCCGAGGGCACAGCGACCCCGAGGAACAGGCGGAGGGGAGGAGAGCGAAGGCCATCATCGAGGCCCTCGCGCTCCACGCCGGTCATTTCTTCCCGAAGGCAGGGGGCAAGGTCGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29684-28863 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGNG010000445.1 Streptomyces sp. SID9124 contig-7000025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29683 29 100.0 32 ............................. CCCCGGCGTAAGCCGCCTACCAGTGTCGAGGG 29622 29 100.0 32 ............................. TTGCAGTGCGACGGCGGCTGTCTGAACGGCCT 29561 29 100.0 32 ............................. GCGGCCGGGGTGTGGACCGCGACGTTGGCCCG 29500 29 100.0 32 ............................. TTGGCGCGCCCGTCGAGGAACATGTACGCCAT 29439 29 100.0 32 ............................. GCCCCCAGGGCAAGCACTACAAGGAGGGCGAG 29378 29 100.0 32 ............................. AAGGCAGCCCGATACGGCATCAGTTCGGGGAC 29317 29 100.0 32 ............................. GGCTGCACCCGGTCGGCGGTCCACCTTGAGAC 29256 29 100.0 32 ............................. CCCTGGGCCATGGTCACGAGGTCCTTGATGGC 29195 29 100.0 32 ............................. GGAGTCCGGGTGAGGTCGGACGAGGCCGCCCG 29134 29 100.0 32 ............................. CCCGGGCGCAGCCCGTCCCCACGACTCCACTG 29073 29 96.6 32 .........G................... GGCTGGGTGCGGACGGCGGCGTACGCGATGAG 29012 29 96.6 32 .........G................... GCCATCGGCGAGCCCTGCGAGAGTCCGAATCG 28951 29 89.7 32 .......A.G..................A GGTGTGACGGAGACCGACCAGGTGCGGATCTT 28890 28 93.1 0 .........-...A............... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.3 32 CTGCTCCCCACACGCGCGGGGATGGTCCC # Left flank : | # Right flank : CAGCGGCGGCCGTCCTCTCGGTCGCCTCGATCCTGTTCCCTCGGCCACCGCCGGCCTCAGGGACGGGCAGGGAGATCAGGTCGGGTACGTGCGTGGACGGGTACCTCGCGGTGGCTCGCACGGCTCCCGGTGGACGCGGATCGAGATCCCGGGCCCCGTCGCGCCGAGGATGTCGTACACCTTGGACTCTTCAGCCCGCATCGGCCGGTCGCAGCGTGCGCAGATCATGCCCGTTCCTGGCGCCAGGCCCGCCCGAGCCTTATGGCCGTCACGCAGGGCGCACCGGCGCGGCACGTCGCGCAGGCCACGGTGTGTCCGATCCAGTTACGGTACGCCGCGTCGCCGGCTGATTCCTTCGGCTTCGCCCGTGTCATGCCCGGCCCTTTCCGCAGGCGGCAGGGCAGCAGCGGGGATACCAGCGCACAGTCGGGCCGAACTCTGGGAGCGGTCGCGCGCCGAGGTCGTGGGCGTCGGTGTTGGTCAGCGGAGCGGCGCACCAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCACACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [25.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 3685-4503 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGNG010000032.1 Streptomyces sp. SID9124 contig-10000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3685 29 100.0 32 ............................. CTCGCGTCGCGCCTCGTCGACCCGGTACAGGA 3746 29 100.0 32 ............................. CGGGGGCTCGTCAGGGAAGTGCGCAGCTCAGG 3807 29 100.0 32 ............................. CCGCACTACATCGCGTCGACCACCCCGAAGCC 3868 29 100.0 32 ............................. CCGACGTTCGTGGTGACCGCCGACGACGACCC 3929 29 100.0 32 ............................. CGTGCAATGCGTACTCGCACCACACCCAGCCG 3990 29 100.0 32 ............................. GACTCCCGAGTCGCCTACAAGGCCCGCCGCCG 4051 29 100.0 32 ............................. CAGGACGTCGAATCCGGCCAGGACGCAGAAGA 4112 29 100.0 32 ............................. CAGCCCTTCCTCGGCGAGGGCCCCCTCGAAGT 4173 29 100.0 32 ............................. GTGATCTTCACGAACGCCTGCGGGGTGTGCAC 4234 29 100.0 29 ............................. CCCGAGGACATCGCCCGGGAGCGCGCCGT 4292 29 82.8 32 ..TT....T.T.................G ACGCGATGACCTGGCCCGAGGCTCCGCAGCCG 4353 29 96.6 32 ......................C...... CGTGCTGCGCCAGCCACGACGCGGACCGGGCG 4414 29 96.6 32 ............T................ GAGCTACCGCCAAGGGCGAGGACAGCGGTTCA 4475 29 93.1 0 ........T.............G...... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.8 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CAAGTGGGTCAGCCTGATCATCAACGCCCTGGCCGACGGCCCGCAGCGATACACGGACCTGGCACGCACCCTGGTGAGCGTCAGCCAGAAGATGCTCACCCAGAGCCTCCGCGCCCTGGAACGCGACGGCCTCCTCACCCGGACGGTCACCCCGACGATGCCGGTCCGCGTCGACTACGCGCTGACACCGCTCGGCGAGAGCCTGGTCCCGGTGATGCGGACGATCAAGGCGTGGGCCGAGCGGAACATGGACGAGGTCCTGGAGGCGCGGTCGGAGTACGACGGGGCGAGGGCGGTGGCCGATCCGGTGTAAGGACGCCTCGCCGGGGCGTAGTCCCACCAGGTACGCGGCGTGACAAGCTCGGTCGGACTACAGCGGCTTGTCGTTGGCCTCGACTGTGTCGTATGTCAGCTGCATGAGCATTGAGGTTGAAATGCCGGACTACGCGAAAGTGGTCAGAATCCACACCCCCACGAGCTAATGTCGCAGGTCGCGAAGC # Right flank : CCCTGGCCATGGAGCACCTTCGGCTGACAGGAGTTCGATCGCCGCACGGACATTGACCTCGGCCAGCCGTGCGACGTTCCGCGCAAGCGGATCGCTTGAATGGATTGGGAGGGGCTGCCGGTCAGAGAGGACCGCCAACTGTCCCCGTACCTCACCTTCGGAGAGAGGGGGCCGGTGCGGCGATGCGGGGGATCAAGGCATGAGCCGACCAAACGTGGACGATGTTGGAAGCCAACTCCGAGTACGGCGAGGAGAGACCGCGAGGCTGGCTGCTGGTCCGGCGTAAAGCCTGTGAGACCGCTCGTACGAAAGCCCCACCGAGCACGACGCGGTGGGGCTACGTAACGGTGAGGCGTCAGACAGCTCCGGCCCGGACGCCTGCGACGAACGCGGAGAAGGCGTCGGCGGATACGTGCACGATGGGACCAGGTGTCTGCTTGGAGTCACGAACGGGGACGGTCCCGGCTGTGGCGGCCACATTGGCGGCGACCTCGATGCAG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 7750-9181 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGNG010000032.1 Streptomyces sp. SID9124 contig-10000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7750 29 100.0 32 ............................. TCCTGGCTAACCTGCCCGTTCACGTACAAGGG 7811 29 100.0 32 ............................. TGCCTCAACGGGCGCCACGACATCTGCGTCCA 7872 29 96.6 32 ............................A CCGGGCGTCGCTGCCGCCCGGTGAAGCGGGGG 7933 29 100.0 32 ............................. CCGGCCCCGCCCGAGGCGCCGGACGAGCACCC 7994 29 100.0 32 ............................. GGCTCAGGTGACACCGTGGCGAGGTCGACGTA 8055 29 100.0 32 ............................. CTCGTCCGCCAGGTGCGGGAAGTCGGTCAACG 8116 29 100.0 32 ............................. AGCTTCTCCGTTTCCGCCGGTCCGATGTCCAT 8177 29 100.0 32 ............................. GTGCCCGAACTGGACGGCGACGTCCAGGGCGG 8238 29 100.0 32 ............................. TACGGCGTCTTCCCCGGGCAGACGATCACCCC 8299 29 100.0 32 ............................. ATCTCCAGCCCCCCGGAGACGGCGCCGCAGAT 8360 29 100.0 32 ............................. AGCAAGGTCGGGGGACTGGAGCAGGAACGCCG 8421 29 100.0 32 ............................. ATCAAGGGCGCCCGCCTCGTGGAGGTCAGCCA 8482 29 100.0 32 ............................. CACGACCCGATCGGCGCCATCGCCGTCGGCGG 8543 29 100.0 32 ............................. AAGAACGGCGACCTGACCGGGCACCGCCGGGG 8604 29 100.0 32 ............................. CCGTACGCTCATCGAGCGCACCTCCCCGTGAT 8665 29 100.0 32 ............................. CCGCCACATCGTGCACCCCCCTGCCTCTGTTC 8726 29 100.0 32 ............................. CGCCATTCCGTGCACCCCCCGCCCCACCTGCG 8787 29 96.6 32 ............................G TCCGGTGGATGTACCTGGACGAGGGCAGCGAC 8848 29 100.0 32 ............................. GCGGCGCCGTTCCGCTCCCGATACCAGGTCTG 8909 29 100.0 32 ............................. CGCTCAAGCCGTCACCCGCGTCAAGCACCTCA 8970 29 100.0 32 ............................. TGCCACCGGCGGACCTTCGTCACGACGACGCC 9031 29 100.0 32 ............................. CACTTGTTGTCCAGGTACATGTCGTACCCGTT 9092 29 96.6 32 ............................A TGGGTGCCGATCCCGGAGAAGACGGGAGCCTG 9153 29 86.2 0 ..........T.T.............GA. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.0 32 CTGCTCCCCGCACGCGCGGGGATGGCCCC # Left flank : ACGATGGAGCCGGCCGGCGCGGCGAGGGCCCTGTCGGAGGCCGACCGCTTCAGCGCGCTCACGTTCGCCCTGGGGCTTCGGGTGCCCGACTGCACGTACGTAGCTGCGGCGAAGCGCGGGGGCGCTCAACCCCATTGGTTCTACAGCCGGAGTGACCGGTCGTGGGCGTGTGCGTTGGTGGCCGATGGGGCGGAGGAGGCCCGGGTGTGGCAGCAGGGGGCGCGGCGGCTGTGGGACGAGGTGACGTCTGCGTACGGCTGGTGGGAGGGGGCGGGGCGGCCGGGGTGGTCGCGGTTCGGGCTCTCGGTGAGCGGGGCGGGGGAGCGGGTTTGGGTGGATGGGGGTTGATGATTGGGCGGGGCGATCGGCTCGAACGGGTATGGTCGTTGACTTGAACGGCGCCGTTTGCCCGCTGCGTGATTGTTGGGGTGGTTATGTCGGATTGCGTGAAAGTGGTCAGAAACGACACTTGAGCGGGGTAAAGCCGCAGGTCGCGAAGA # Right flank : CGGCGGCCTTCGTGTTGCTGAAGCGGATTGGGAGTGTCGGCAACGGCTGAAACTGAGGCAAGGGCAGCTCTACGCGAATGGCCGGGGGCGACATGGCGGCCCCTTCTCCCCGGCCGTTGTACGTCGCCCTCCTGGCGGTCCCGCGAAAAAGGAAAGCCAGGCTCGGCGTCCCTCAGTTGGCCGCTGGATTGGATGCGATCAGCCCTGATGCCTGCACCGGATGGCCGGGAGACTCGGAGTGGTGTGACCGCACATTTCGGAGCCGTACGAAAACGTCCAAAAAGTGTTGGGCAATGCGGGCCGTCTCGCGGAGATACGCGAATGCCTCGAACGCCGGGCTCGACACGATCGGGCGGCGGCCGAGGTCCAGCAGGGCGTACGCCTGGCGGAAGAGTTCACGGACGGCAACGTCGGAGTCGTATCCGAGGTCCTCGCCCATCAGGAGGTTGAGATGGCCGCGGACCTGGCGGATGTTCGCGTCGATCGCCTCGCGCGTGGTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 11429-12738 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGNG010000032.1 Streptomyces sp. SID9124 contig-10000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11429 29 100.0 32 ............................. TGGCTGGCCGAGATGACCGACCGGCGCCTGGA 11490 29 100.0 32 ............................. TCAGCCGCCTCGTGCGCGAGATCAACGACGAC 11551 29 100.0 32 ............................. GGCTTCGTGCCGGTGGCAATAGGTGCCTCGTG 11612 29 100.0 32 ............................. CGACGCTTCACCATCACCCTCCCCCCGGGGCT 11673 29 100.0 32 ............................. ACCAAGCTGGCCAACCGGCTCGCCCGCGAGGA 11734 29 100.0 32 ............................. TGGCGGGCCAGCAGGCCCCGCAGCCGCGCGAC 11795 29 100.0 32 ............................. GCCACCGCGAAGGCGCCGACGGCGCTGGTGCC 11856 29 100.0 32 ............................. TGGCCGTTGAGGTCCTGGTCCAGCTCGATGTT 11917 29 100.0 32 ............................. TGCTTGTACAGCGCTCATAGGGCAGATAAATT 11978 29 100.0 32 ............................. GCTGCCGCGAGGCTGAGGGCTTCTGCTGCTGT 12039 29 96.6 32 ............................T CGGCACGATGGCCGAAGCCACGGTCAAGACCG 12100 29 100.0 32 ............................. CGTTGCGGCCGTCCTGAACGCTTCCTCACTGC 12161 29 100.0 32 ............................. GCTCCTCCCGGGGGCCGACCTGTGCCCGGCCT 12222 29 100.0 32 ............................. CCCGTCTCGCGGTGGAAGTACCAGGGGGCGGA 12283 29 100.0 32 ............................. ACGTACGACTCTGTCAGAGGCCGCTGACAGCA 12344 29 100.0 32 ............................. GCCCAGCGCGGCGCGATCTTCGGTACCACCGG 12405 29 100.0 32 ............................. GTCCCGCCACGGCATGCCAGTCCGGGCCCCGG 12466 29 96.6 32 ........................A.... AGGCCAGTCAGGAGGTCTCCGGCGGCCTGGGA 12527 29 100.0 32 ............................. CACTACACCGGCTCGGTCCGGCAGGAGACGAC 12588 29 100.0 32 ............................. CAGCGGAAGGGGAAGGAACGCACCCCCAGTTC 12649 29 100.0 32 ............................. GCCGAGTCGGATCGCACGGCCAAGGCGTGGGA 12710 29 89.7 0 .................A....C....T. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.2 32 CTGCTCCCCGCACGCGCGGGGATGGCCCC # Left flank : AGGCCGCCTATCTCTTCCACGTCTCGCATGTGCACTACGAGAACCGGGAGCTGGCGCAGTCCATCAATGCGATGAAGCAGTCGATCAAGGCCACGCCCCGCCAGGAGAGGCAGGGGCGTCTGCACGCCAACGCGGTTCTGGCACAGCGGCAGTTCGAGTTCGGCCACATCGAGGAGGCATGCGCCTCCTGGCGGACGTTCCTCGACGACTACGCGGTGCTGTCCACGGCCCGTGGGGATGAGCACTTCGAGACGATGCGGAGGAGCCTCGCGCTGCATGGGAAGTCTCGTGCCGTACGGGCGATGAGTGAACAGGTGCGCGTGGTGGCCGCCATGAAGGCTTGATCCTTGCCGTGGGGGAGAAGCAACGGACTGAGGAACGGAGTTGCTGGCCTATGCTGCCGCTACGCCTGCTGTGATGCTGTTGGGGTGGTTATGTCGGACTGTGTGAAAGTGGTCAGAAACTGCACTCGCACGGGGTAAAGCCGCAGGTCGGGAAGA # Right flank : CGACCACCCGGTTGACGCGCTCCGGTACGCCATCTGCCCACCGTGAACCTCAGGAACAACACCCATAAGAACGCGGCGACTTCGTGCACCGTATAGTTGAACGCGTTCAACGCTCCGGGCGTCGTTCAGTAGCGGGAGGCAGCCGTGGCAAGCAGGCACACCATACGGGCCGGGATCGCCGCGCTCTGCGGCCTCGTTCTGGCGGCCTGTGCCGGTCCTGCCCAGTACTACGCCGGCACCGGCGTCCACGACGCCACCGCTGCCCAAGTCGCCGGGAGCTGGTCGAACGTCGAGGGCACCCGGGTCGAACTGCGCGGGGACGGGACAGCGGTGCTCAGGAAGCTCGATGGGCAGGACTTCGACTACGACGAGGGTTGGCGCCTCTCCGGTACCGGGACCTGGCGGCTGGCCGACACCGACGGCGGCCAGGTCGTCCGGCTCGCGCTGAAGACCTCGACGAGGGTGGACGAACGCGCCCAGGAGCCCGCCGGCGCCCAGGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //