Array 1 156488-154381 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNM01000002.1 Salmonella enterica strain BCW_4934 NODE_2_length_601289_cov_3.03592, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 156487 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 156426 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 156365 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 156304 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 156242 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 156181 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 156120 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 156059 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 155998 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 155937 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 155876 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 155815 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 155754 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 155693 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 155632 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 155571 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 155509 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 155448 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 155386 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 155325 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 155264 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 155203 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 155142 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 155081 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 155020 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 154959 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 154898 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 154837 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 154776 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 154715 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 154654 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 154593 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 154532 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 154471 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 154410 29 89.7 0 A...........TC............... | A [154383] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 173872-172746 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNM01000002.1 Salmonella enterica strain BCW_4934 NODE_2_length_601289_cov_3.03592, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 173871 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 173810 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 173749 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 173688 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 173627 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 173566 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 173505 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 173444 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 173383 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 173322 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 173261 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 173200 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 173139 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 173078 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 173017 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 172956 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 172895 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 172834 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 172773 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //