Array 1 269014-270262 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOFG01000005.1 Escherichia coli strain 619 BN4_619_1_(paired)_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 269014 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 269075 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 269136 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 269197 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 269258 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 269319 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 269380 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 269441 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 269502 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 269563 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 269624 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 269685 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 269746 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 269807 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 269868 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 269929 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 269990 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 270051 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 270112 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 270173 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 270234 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 295962-297820 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOFG01000005.1 Escherichia coli strain 619 BN4_619_1_(paired)_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 295962 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 296023 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 296084 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 296145 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 296206 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 296267 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 296328 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 296389 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 296450 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 296511 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 296572 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 296633 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 296694 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 296755 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 296816 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 296877 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 296938 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 296999 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 297060 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 297121 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 297182 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 297243 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 297304 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 297365 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 297426 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 297487 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 297548 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 297609 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 297670 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 297731 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 297792 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //