Array 1 274051-275670 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQHY01000003.1 Haemophilus haemolyticus strain M26164 M26164_HUY4190A154_cleaned_ctg_2365, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 274051 32 100.0 34 ................................ GTAGTAGTGTTCTTCAACCACGAACCCATCATTA 274117 32 100.0 34 ................................ TTTGCACCGTTTGCCGCTCCAGAGAAACTTTTTG 274183 32 100.0 36 ................................ ATTATTTATCACCTTTGTTTTTAATTGAATTAATAA 274251 32 100.0 34 ................................ CCATTAACCGAAAGAGTCTTTAATTGGGTCTTAG 274317 32 100.0 34 ................................ ATTGTTTTCTCGTATTACGTCAATAAGCGGAAGG 274383 32 100.0 35 ................................ AATTTAGCGGTATGGTATTTGATTTAGAAGGCTGG 274450 32 100.0 34 ................................ CATATTGTGTTTGAGATAGTTTTTAATCTGCTCA 274516 32 100.0 34 ................................ AATATATTGAACGTTACGCCGCTATTGGGCAGTT 274582 32 100.0 33 ................................ AGTGCTGCATTATTAACAAATCCGCTTACTTGG 274647 32 100.0 33 ................................ CGCTATGGTTCACAAAGACGAAACCACACCGCA 274712 32 100.0 35 ................................ ATTAAAAGTAGTTGACGAAGGCATTTACGCATTAC 274779 32 100.0 34 ................................ AGCTTGGCACAATCTTAATAATGCAGTATTAGAT 274845 32 100.0 34 ................................ AATGTGACTGATTGCACTACGTCGGGTCATCTCG 274911 32 100.0 34 ................................ ATCTAAAGCGATATTAGAAAGGCTAACGATAAAG 274977 32 100.0 34 ................................ TGCCTTTTCTGTACAAGCAAAGCAGTATACACCT 275043 32 100.0 35 ................................ TTGTTGCACCTAATCCGGCTTGTGTGTTGCCAATT 275110 32 96.9 34 .............T.................. CCCTAATAAATCTGTTGCAGAAGCATTAAGTTGT 275176 32 100.0 35 ................................ CGTGAGTACGAATTGATGTATTAAGAATTGCTAAG 275243 32 96.9 34 .............T.................. TTTGGCTCGTGGTCTTGTCGTTCTAGCCAAGCTA 275309 32 100.0 34 ................................ ATAATCAACATCAATAAGTTTTAAACGAATTAAA 275375 32 100.0 35 ................................ TGAATTTTTGGTGGAAGTAGAACGCCCTGCGGATA 275442 32 100.0 33 ................................ GTAGCATCTAAATCTGCACGGCTAGCACATTTT 275507 32 96.9 34 .........C...................... ATATCAAGATTTATCAGAATATGAGAACCAAATA 275573 32 100.0 34 ................................ ATCATCAGCAAAGGAAATAGCGGTAACAAAACCG 275639 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 25 32 99.6 34 GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Left flank : TTGATGAGATAAGCCATGTTAATGCTGATTACTTACGATATTTCTTTTGACGATCCAAATGGGCAAATGCGATTACGCCGTATCGCAAAACATTGCTTAGATTACGGCGTGCGGGCGCAATATTCGGTATTTGAATGCGATGTCACGCCTGACCAGTGGGTTATGTTGAAAAACAAACTGTTGGAAACCTACGACCCCACATGTGACAGCCTGCGTTTTTACCATTTGGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCAGCAGTGGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCCTTATTTTCTTTAACAATTTGGATAAGTTAATCTATTTGTATAACGGTAATGTGGCCGTTATACTGACTAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATTTGCTGATTTTTCTTGCTTTTTTATGTAGGGA # Right flank : CAGCATTAAGTACTGAGCAGTACAACCGTGCGCAAGCTGAAAAGCAAAGGGAAGATGAAATTAAAAAAATCAACTCTAACTTTAAATATGAAATCAAGTAGGTAAATTATGGAAAATTTAATTAGATTATCTTTATTGGCTTTATTCTCTATTACTCTCTTTGCTTGTAATGAAGAAAGTAAGGAAATGACGGTTTATGATTATCTTGTGAATAAACCTTTGCTAGATAGTGATATGCAGAATTGTATTAGTGGAAAAGAAAATAATGTGCATAAGTGCGATATAGTAAAATCTGCTTACAACAAATATAACTTCTTTGAAAAAGGTCTTTATTCAGAAAAAGACTTAAAAGAATTAGGCAAAAAATAACTAATAAAAAGGGGATTGTATGGGTGTTTTTACTTATGTAGATAATGCTGTGTCTACTGTATTAAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGTCCAAATATCTCGCTCTTTCCCAAACTTTGAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //