Array 1 117320-116921 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSSG01000002.1 Bifidobacterium adolescentis strain TF06-10AC TF06-10AC.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 117319 36 100.0 34 .................................... CTGCGGTGCCGCGTCTGCATACGCGTTCGCCCGC 117249 36 100.0 37 .................................... ATATTCGTGGCGATCGGCTTCATTGGCTTATCGCAAT 117176 36 100.0 37 .................................... AGGGCGAGGCGTTCGGCAATCCAGCCCAGCGCGTCCA 117103 36 100.0 37 .................................... AAGAGTTTCCAGAATCAGCTCATCCAGACCGCTCGAG 117030 36 100.0 38 .................................... CGAACGTCGTGTGGCAGAAAAAGGACGGCTCGTATCTC 116956 36 86.1 0 ...........................A.AT..CC. | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 97.7 37 TCCTCAATGAAGTCCTGAGCTTGAATGCTCAGGAAT # Left flank : ACGACAGTCTCGATGGATGCGCCGGTCTCGAAGACACGGATTCTTTTGATGAATGGATCGATTTCGATAATCGATTGAAAAAGAAATACGGCGAAGGCTATGTGCCGTCGGAAGTATTTTTAGCTATTCGGAAGGCATGACAAGCTCGTCGGCATCATTGATTTCAGACGTCCGCTATCCCCTTTTCTGCTGCAATACGGAGGAAATATTGGGTATAGCATTTTGCCATCGGAACGTCAAAAAGGGTATGCCAAAGCGATGCTCGCCTTACTCCTGCCCATCTGTAAAGAGCAGGGCGAGCAACGTGTTCTACTTACCTGTCACAAGAGCAATGAAGCATCAAGACGGACGATTATCAGCAATGGTGGAAAGATGGAGAATGAAATCGTGAACGGTACGGGACGGAACGAAGACAGTATCATCCAGCGATTTTGGATAGACCTCTGAATATTGGCTTTAATCTAAAAAACTGGAGACGGTTGCGCTTCTTCGCCCACAGC # Right flank : GATTTTTGTTCCGCCCTTATAGTGGGGCGGNNNNNNNNNNTTGTTCCGCCCTTATAGTGGGGCGGCTTGCGCCGCTTGGTTTGCATAATACTCGGTTTCGGTCCGTTCCGGTGTCCTGTAGCCCAAGGACCGGTGCAGACGCTTCGAGTTCCACCACGAGACCCACCGGAACGTCGCCAATTCCAGGTCCCTCAAATCCCGGAAGGGCTTGCGTCGCCAGACGAGCTCGGTCTTGTACGCGCCGTCGGCGCTCCCGGCCATGGCGTTGTCGTACGAGTCGCCGACCGTGCCGGCCGAGGGAAGCATGCCGAACTCCCCGACCCTGGTGGTGCACACGAGGCTGATGTACTGCGCGCCATGGTCGGAATGGTGCACGAGACCGTCCGTGCCGCCATGCGAGGCAGCCCATGACATCGCCTGTTCCAGCGCCTGCAGCGGCAGCTCCCCGGTGTCCATGGTGGTGGCGCACGCCCATCCGACGATCCTGCGGGCGAACACGT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCAATGAAGTCCTGAGCTTGAATGCTCAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 79098-78045 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSSG01000007.1 Bifidobacterium adolescentis strain TF06-10AC TF06-10AC.Scaf7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 79097 36 100.0 37 .................................... GTGACCGCGCTGGTCATGTTCAGCCCTAACAGTTCGA 79024 36 100.0 36 .................................... GCCGGTAGGTTTGACTGCGGGAACCGCGCGATGCGG 78952 36 100.0 34 .................................... CCATCATCGATACGTTGCTTGGTAATATCGTAAT 78882 36 100.0 36 .................................... CACCACCACGGACGGGGCAAGCACAAGCCTCGCCGA 78810 36 100.0 34 .................................... GCGCGTACTCCGCAAACGTCTGCGTCTTCATGAG 78740 36 100.0 35 .................................... ATGGTCAGATCGGCGCTTGGAATCTGCTCAGGATT 78669 36 100.0 37 .................................... ACCTTTATCGGACGAATGCGAAAAATCGGTGTTGCTG 78596 36 100.0 40 .................................... TTATGATACGAGACCAACGTCCGGTAGCAGCAATCTACCA 78520 36 100.0 38 .................................... TTTATGGTCACGTCGGGCAATATCGGCGGAGTCAACAA 78446 36 100.0 37 .................................... CACAAGTCATGGACGATTACGGAACAATGGTCATGTT 78373 36 100.0 39 .................................... CCAGGGATGGCGTCGGCCAACTGGTTCCAGTTCTCCGTC 78298 36 100.0 39 .................................... TCGTCACGCCGAAATATTCAGATAATTTCAATAGTGTAG 78223 36 100.0 35 .................................... AACTGTTCGGTCAGCGAAGCCGTGCCATTGACGCT 78152 36 100.0 36 .................................... TAGGGGACTGAATCGCGGAACAGCCGACTGGACATG 78080 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 100.0 37 ACCTCAATGAAGTCCTAAGCGTAAAAGCTTAGGAAT # Left flank : GTTGTACGTGCGCGGATCGTGGATCGGCTGATGCATCGTCGGCGTTGGAGGGGATGATGTGGTCGCTCATTCGCTGAGGCTTTCTCTGAAGTGAATGCGGTGTTGCATACCATGGCGCGCAGTACATCAGCCTCGTGTGCACCACCAGGGTCGGGGAATTCGGCATGCTTCCCTCGGCCGGCACGGTCGGCGACTCGTACGACAACGCCATGGCCGGGAGCGCCGACGGCGCGTACAAGACCGAGCTCGTCTGGCGACGCAAGCCCTTCCGGGATTTGAGGGACCTGGAATTGGCGACGTTCCGGTGGGTCTCGTGGTGGAACTCGAAGCGTCTGCACCGGTCCTTGGGCTACAGGACACCGGAACGGACCGAAACCGAGTATTATGCAAACCAAGCGGCGCAAGCCGCCCCACTATAAGGGCGGAACAAAAATCAGGCCATATCAAAAAGCTTAGGAATTCCAGTCGTGCCAGCCGGGACCGTGCATGTGGCCGCATGG # Right flank : AGTCACACTATAAAACACTGCAATGACACGTATCTCAAAGCTTTTTGCGAGAGGTCCTTCCCCTTGTCCAGATTAGAGATACATCCCCAGAATGCCCTCACACATAAGGCCTATTGTTCTTAGGTGCGAGCGCTCACCGCGTGTCACAGAAACGATTCAGCACTCGCACCTAAAAACAAACACTCTTCACTTATCAAGCGACATAGCTATGTTGAGCTAAGAATCAAATCACCGTTGGTATGTCTAAATCCGTATACCCACGATGTCCCAAGAAATCCAATCCCTCTTCCGTCTGTGCAATCGTCCCCAAAGAACAGAACACAACGGAATCAGTTGAACCATCAATTTCCTGTTCAACTTGCATGCGAACATCAAGCATCATCGAAGGTCTGACGCGCAATAGAAACACGCTATATTGCAGACGCTCCCCATAATGCTGAAGAATCTTCGCGATATGTGAACGACGATAATCGTCGCTCACATCGTATGCGACTAAATAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCAATGAAGTCCTAAGCGTAAAAGCTTAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 489-1105 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSSG01000011.1 Bifidobacterium adolescentis strain TF06-10AC TF06-10AC.Scaf11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 489 34 85.7 39 G...A.-.T.A........................ TGAGGTCAAGTCATGCATGGCTGATTTCAAGAGCGGCAA 562 35 100.0 35 ................................... TAGATAATCGTAGGGGTCGATGCTGATGGTCACGC 632 35 100.0 40 ................................... TCGTGTTAAGTGTAGCTTAATCTCGATCAGGGTGTGTGTC 707 35 100.0 36 ................................... TTCGAAACCGCAGGAGCAGCCCCAGTCGGAGCAGCG 778 35 100.0 43 ................................... ACCAGAGCCGAAACAGTCACACGGCAGAAGCTCGCCGCCTGAA 856 35 94.3 39 .............C.T................... AAAGTGGCTCGATGAGGAGCATTACTTGGTCATCCTGCA 930 35 94.3 36 ...............T.T................. ATCGGTCCGCGAGACCTCCACCAGCCTCGAGATCCT 1001 35 97.1 37 ...............T................... AACCGTCATGCCGCCCTCGACCATCGTGACCTCGTCA 1073 33 85.7 0 ...............T......A.A...--..... | ========== ====== ====== ====== =================================== =========================================== ================== 9 35 95.2 38 ATTCCTAAGCTTTTACGCTTAGGACTTCATTGAGG # Left flank : GGATCTGAACATGCGGTAGCCGCGCGGCGTGATGAACCCGCGGTCCAGCGAAGCGGCCAGCACCCTGCGGATCGGCCCGATCCTGAAACGGTCCTTGAATTCGTCGATGTGAGCGACCATCAACGCCGTGTCGGGTCGAGCCGCGCCGCGAAAAAAGCCGACGCCGTCGTCAATATCTCGTTCGCCCGCCTCAATCGCGCGACCTCGGCCCGCAAACTCCTCAACTCCGCCATCGCGTCTTCGGCCGACTGCTTGATCTCCGCCGCGACCGTGGCGTCCGTCTTGTCGCGCCAACGGCGCAGCGTCTCCGGCGCGACCCCCAGATCCTTGGCGACCTGTTCGATCGCCTTGGTCTCCGACGAATACGAGCCGCGCGACTCGGTCGACAGCCTGACGGCCTTCGCCTTGAACTCCGGCGTGTGTCTCGTTCCTTTTGCCATGGTTCCATCATCTCCCATCGAGTTAGGGGAAATGCGGAACAAAAATCAG # Right flank : GGGATGTGGTATTCTTACGGAAGAGCACCCCCGTTACCGTCTTTTCGATAGCTTCCGAGGTGCTCATTTGATTGTGGGTGATGTTCTTGGAGGAATGAAGGCACCCATATTTCGCTTGTGGAAGCTTCCAATGCGGAATTCTCAGGGTGGCTTTTTGATTCCACCCTCAGGTAGTTCAACGATTAGCTTCAGGTGGTATGCTGGCTTTTGTGAGAGGTCTCATTGGCACCATTCGGTGACATTGAGACCTTCATCTTTGCCTTATATTCGGTTGTTGATTTTCCGTATCCTGGGCAACATTTTGATTTCGCTTTTCCGATTCGCTTATTTGGCTTGTGTCTCTTCTACCGCTTACCGTCTCACCCCATCCCTGTACTATAGGGGGTAAAGAGGAGAGGACAATGGCACGATATGATTTTTGCCCGCAATGCGGCACTGCAAACGCGAATGGTGATTTTTGTATCAATTGCGGCGCGTCGTTGGTGACGTCTGATGATGTG # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTAAGCTTTTACGCTTAGGACTTCATTGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //