Array 1 284367-285235 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPD010000003.1 Pseudomonas cichorii strain LJ3 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 284367 28 100.0 32 ............................ CAGGTGAGCCGCAATCGAAGATCGTGCAACGC 284427 28 100.0 32 ............................ ATACGACGTCCGCATTCACAGCGCTGGCAAAT 284487 28 100.0 32 ............................ GATGGTCACGCTGTCTTCTACAGACTGCCGCA 284547 28 100.0 32 ............................ ACAGCGAATGGACGTTTGCACATCACACCTGC 284607 28 100.0 32 ............................ TTTACCCACCAAAGAGAACACCCACCATGGGC 284667 28 100.0 32 ............................ CAGTGACCGGGCGACGACTGCAAAAGCCAATT 284727 28 100.0 32 ............................ CTCCAGGACACAAGCGGCAGACCGGTAATCAC 284787 28 100.0 32 ............................ GGCGCTTCCAGGCTTACCGCTGATGTCTTTAC 284847 28 100.0 32 ............................ ACCGCCAGAACTGGCGGGCTCGGCAGGTGATT 284907 28 96.4 33 .................T.......... CGTTGAACGAGGCAGTCATAAACCAGGTGATGC 284968 28 96.4 32 .................T.......... GACCCCACGTACACATTTTTTCCCGTTTCAGG 285028 28 96.4 32 .................T.......... TGACAGCGAGCAGCGAGCTCTTCGGGATCAGC 285088 28 100.0 32 ............................ TAACGTGTTGGCTTCTGTCACCGAGGCGTCGA 285148 28 96.4 32 ......................C..... CATGTATTCATGTCGTAGAACTCGGCGGGCAG 285208 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.8 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CTGCAAAAAACCTTGTTGACCAATGATATGCGCATCCCTATACTTCGCCGCCATTGAGCCCTGATGGCGGAATTGGTAGACGCGGCGGATTCAAAATCCGTTTTCGAAAGGAGTGGGAGTTCGAGTCTCCCTCGGGGCACCAAACAGCAAGACACCCAAGCGGTTGCAGAGCTTGGGTTTAAAAGAAACCGGCCAGTTGAGCCGGTTTTTTTGTGCCTGGGTTTTGGTGATTGCAGGGGCTGTAGGAGCGAATTCATTCGCGAATCAGCATTCCAGGCAATACATGTCCTTTTAATGTACCGGCCTATCGCGACTGAAGTCGCTCCTACAAGTCCGGCGCCAAACCACGACTTAACGCACCCTCTTTTTGACCCTCTTTTTTCAGACTCCGTCGCCCCCTTTAAAATCAATAACTTACGAGAGCCACAAAAAAGAGGGTAAAACAGCTTCAGGCAGGTGGTTTCTCTTTAAAAACGGAGAGTTATTAGGCAAGGTGTCTA # Right flank : AATCCTCGAAGTGCAGGAAGAGTGCGTTGTTGGATTCACTGCCGCACAGGCGGCCCAACCCTCATGCCAGTCAAATCCTACACCACACTTACACACGCCCCACAACCACCTACTCCCCATCCCCTCACCCAAACTGAATCCCCTCATTTTACCAACCCAGCCCCCAAGCTACCCTTCCCGTCATTCGCTGCCCCAGCAGCGACCGGGTTTGGCGACCCGATCTAAAGATAAATTCCCCCATCGCGAAGCAGTCGATTTATTCTTCTGCGCACTGCGTTATGGCGGTTGTGTGCGGGAGGCCTTCGGGTCTGCCGGGTTTATCTTTTTACCGGTTCGCCAACCCTCACACAGCTGCCTCCATTTGTTTGGCGACAATCCGTGGCAGCTTTTTTCAGCGACCATAAAAAGTGTGCCTCTATGCAAAAGCTTCTATCCGACTCCCCGTGTACATCCTCCTTCCAAGCCACCCTCTTCCTGCGACACAGCCGCATGCTCCGCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : CTTCACTGCCGTGTAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 311442-311174 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPD010000003.1 Pseudomonas cichorii strain LJ3 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 311441 28 100.0 32 ............................ CGCCCAAGCCCAGCATCGCGCTGGGCCGAGGC 311381 28 100.0 32 ............................ ATCATGCCCAATCGAGCGAACTCGATGCCCCG 311321 28 100.0 32 ............................ CATGAGTGGCGAGATCACAGCCCAGTACTCAC 311261 28 100.0 32 ............................ TACGGCCGAGATCGTTCGCACCGTCATGGGCA 311201 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 CTTCACTGCCGTGTAGGCAGCTCAGAGA # Left flank : GTCAGAATCAGCATTCCGGAAAATGTTTTTGTGCGTCTATTGCTCGCTGTAGATACGGGCACGCATCGGTAGATATTGTCCCTTGCATTGTCGCGGGCAAGCCCCCTCCCACTGGTGGTACATCCGAGTCGGTTGAGCACCGTCTTCGTTACTGAAGTCGCTACGGAGTAATGCCGATCAGTTAAGGCATACACAACACTTGTGGGAGGCAGCTTGCTGGCGAAAAATCTGAAAAGCGGCAGATATTCTGCGGCTGTATATTGAAGTCGCCAGCAAGCTGCCCTGCACAAAGTGATTTATCAAAAAATACGGCGCTGTCGCACTCCCCGGGAATATCTGTCTACGGTGGCCAAGAATGAACCCTTTCTTGACCCTCTTTTTTTCACTATCGGTTCGTCTTTTAAAAATCAATGATTTACAGATATCGATAAAAAAAGGGGTAAACGGCTGCTGGTGCATATTTTTCTTTGAGAACGGAGGGTTATCGAGGAGAGTGTCTA # Right flank : AGCTTCACCGCCATAGTCGCGGGCAAGCCCCCTCCCACGGGAGTACATCCGATAGAGTTACATCGCTTGAAGCACTGCTTTCGCGACTGAAGTCGCTCCCACACAAGCCAACTCATTCGCGAAAGGCCTTGAAGGCATCCTGCACAAACCTTCTAGACTTCCCATCCCCCATGCGCGATAACACGCTTCTCTATCCCCTTGTTTGCCCATAAGCCTGCCATGACTCAGAGCAACTGGATCAATCTTGCTCAGGACCGCGATACCGGTATCGAGACGCTGCATGCGCATTTCGAGGGGAATGCTCATGCCTATGATCCTCACTGGCATGACAGTTATCTGGTGGGTGTGACGGAGCAGGGGGTTCAGCAGTTTCATTGTCGGCAGCAACGTTATGCCAGCACGCCGGGTCAGGTGTTCATGCTGGAGCCGGGTGAGATTCATGATGGGGATGCGCCCAGCGCCGAGGGTTTCACGTATCGGACGCTGTACCTCGACCCGCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 312070-313058 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPD010000003.1 Pseudomonas cichorii strain LJ3 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 312070 28 100.0 32 ............................ ATGAACGATGACCACTTCTCCTTGAGTCGCTG 312130 28 100.0 32 ............................ TTCAGCTCTTCGCTTTCGAGGACGCTTGGCAG 312190 28 100.0 32 ............................ GATGATGGCTTTGGAACAAGCAGACGAATACG 312250 28 100.0 32 ............................ AGCATACCGATCTGAACCTAGTGCTTGAGCCC 312310 28 100.0 32 ............................ TCCATTCGCCCGCCAATGCCATATGCCGAACG 312370 28 100.0 32 ............................ ACAAACTTGAAGGCATAACCGCCGCCACCGGC 312430 28 100.0 32 ............................ CAGTGTCACTAGGCATGAGGCCGACTGCTTTC 312490 28 100.0 32 ............................ TGAGCGGGGGCTTCAAGCCTGTAGGGTACTCA 312550 28 100.0 31 ............................ GCAACGCTTGCTCAAGCCCTTTCGTCGAAGA 312609 28 96.4 32 ...........................A ATTTCCCGTACCACTGTCTGCATCACCTCCTT 312669 28 96.4 32 ...........................A TAAAAACTGGAGCAGCACATGAGCACAGCAGA 312729 28 96.4 33 ...........................A TGCTGGCAGATCCAAGCGGTGGCTGCGTTCATA 312790 28 96.4 32 ...........................A TTACAAAACTTGGCTGGCCGAGATACGCCGCC 312850 28 92.9 33 ......................T....A AGTGGCGATCCAGCCGGGCATTGCCTGTATGCT 312911 28 89.3 32 ............C.........T....A ATATCGCCATCTTCCCAGTAATAGAAATCCAC 312971 28 85.7 32 ...........CA..A...........A TACGACCCGGTCATTAATGGTCATCTGCTCTC 313031 28 75.0 0 A..A.......AAC..........C..A | ========== ====== ====== ====== ============================ ================================= ================== 17 28 95.8 32 CTTCACTGCCGTGTAGGCAGCTCAGAAT # Left flank : GTCAAGAAAGGGTTCATTCTTGGCCACCGTAGACAGATATTCCCGGGGAGTGCGACAGCGCCGTATTTTTTGATAAATCACTTTGTGCAGGGCAGCTTGCTGGCGACTTCAATATACAGCCGCAGAATATCTGCCGCTTTTCAGATTTTTCGCCAGCAAGCTGCCTCCCACAAGTGTTGTGTATGCCTTAACTGATCGGCATTACTCCGTAGCGACTTCAGTAACGAAGACGGTGCTCAACCGACTCGGATGTACCACCAGTGGGAGGGGGCTTGCCCGCGACAATGCAAGGGACAATATCTACCGATGCGTGCCCGTATCTACAGCGAGCAATAGACGCACAAAAACATTTTCCGGAATGCTGATTCTGACCCTATTTTTTCACCCAATATGCGCCCCTTTAAAATCAATCACTTACATATCTGATGAAAAAAAGGGGTAAAACGGCTGCTGGTGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGGAGAGTGTCTA # Right flank : ACACTCAAATCAACCACCCAAAAAACCCATAACCAACTGATCTACATAAATTTAAATCCAAACCTGCAGAAGCACGCCTGCCCACAACAACCCTTCTGTAATCCACTCCCTACAAGAACCGCAGACTCATCTTTCTGACTCACGACCATCCCCAACCTCAAAAAACCTAAAGCACCGCCTTACGCTTTCGGCTATATACATTCCCTCTCCCCGGCCAAGTGCCATTACTGGTTCGATCATGGATGACATCAGTTCTTCGGATCTCAAGACGATCCTGCATTCAAAACGCGCGAATATTTATTATCTGCAGCATTGCCGGGTATTGGTGAATGGCGGTCGGGTCGAGTATGTGACCGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACCGTGCTGCTGGGCACGGGGACTTCGGTCACTCAGGCGGCGATGCGTGAGTTGGCCAAGGCGGGTGTGCTGGTGGGCTTTTGCGGCGGTGGCG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 323085-321736 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPD010000003.1 Pseudomonas cichorii strain LJ3 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 323084 28 100.0 32 ............................ ACCACCCCACGTGATGTCTCAAAAGCCTTTGC 323024 28 100.0 32 ............................ TGCGACAACCCCTGCCCCGAGCAATGTCGTTT 322964 28 100.0 32 ............................ GAACAGGTCCACGTTCACGAGCTGAAGTATCT 322904 28 100.0 32 ............................ AGATTGTCTACGCTCTGCGCCTGAACTTCTGT 322844 28 100.0 32 ............................ AAATCCAATTGGTCGATTCCACGATATGCAGG 322784 28 100.0 32 ............................ GATCGATCGGCAAAGCCCCGCGATGATGAGCA 322724 28 100.0 32 ............................ TAGCGTGTATGCGTTATGCCCGCTCACAGAGC 322664 28 100.0 32 ............................ CAGGTAAGCACAATGCATCAGTTAGCAAGACG 322604 28 100.0 32 ............................ CCTATGAACCCGACGAATTGCGCATTAGGATC 322544 28 100.0 32 ............................ CCTATGAACCCGACGAATTGCGCATTAGGATC 322484 28 100.0 32 ............................ TAAGTGATGCGCAATTATTACCGCTCGGTAAA 322424 28 100.0 32 ............................ AGCATCCATTCGGTGCGGGAAGTGGCCCAGTC 322364 28 100.0 32 ............................ AGGACGTACGCTTTTCCTCGCCTACCATGTAC 322304 28 100.0 32 ............................ TGAAACGCCGCCGTTCGCGCCAGCAAATTCTG 322244 28 100.0 32 ............................ AAGAACATCATCCGGGGCTTAGTCGAGTAGGC 322184 28 100.0 32 ............................ ACCGCGAGCCATGGGCAACACCAGATCAGGTA 322124 28 100.0 33 ............................ GATCTGAATGCGCTTGCCCAGGGCAACATCCAC 322063 28 100.0 32 ............................ ATTGCCCGCGAACGAGAATTTCGCCGCATCCA 322003 28 100.0 32 ............................ TCGGGCCGCTGGCCGCGCCGGTCGTAGAGCCG 321943 28 100.0 32 ............................ CTTGCGAGGACAGGTTTTTGCGCTCCTGATGC 321883 28 96.4 31 ............G............... CTACGGGCGTTAAGACCCGGATAAATCGCAC 321824 28 89.3 31 ...........C.C.......C...... GATCACTTGAGCATTGAGCAAAGCACTGAGC C [321798] 321764 28 89.3 0 ........T......A........A... | A [321751] ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.9 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : AAGGTGGCCAGAGCATCAACCGCTTAAATGATGGGTTTCAGGGTAGTAGAGAGTGGGGGTGTTTGCTGCCGAGAGAGCCGACTGATTGGGTAGGATTTATCCGCGAGACGTCATTGCAGACGATGCATTTTTGAGAGCTGAGTGATTCATCCCGGGCTCACACAACCTTGTGGGAGGGGCCTTGGCCGCGACATCCTTCAGACAAAATATGTCAGGAAATGGAGCTTTTCCAAGCCGTCATGTCGCAATTTCCGGTTTCTAGCGACATGTTATGAGGTCATGTCGCTGGCGACGACATATCAAAAAGTACGGCGCTGTCTTGCTGCGGGTGAGCACCTGTATACGGCGGACAGGAATGAACCCTTTCTTGACCCTCTTTTTTCGCCTCAGATTCGTCCTTTAAAAATCAATGACTTACAAAGCTCGATAAAAAAAGGGTTAAAACGGCTGTTGGCGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGCAGAGTGTCTA # Right flank : AACAAAGCCCTTGTAGCTAGCTCACCTACAAGGGCTTCAATCCATTGCCAAAAGAACATCAAAACCAGGGAACAGTAGCCGTAGCACTCAACCCATAGCTATTGAAGGTCCCATCCTGGGCGCTGCTCTGTATCGGCTCATGCCGGATGAACAGCAGGAACGTCTGACCATTGGTACGGCTGCGCATCTGGACGAAGGGCAGGTTGCAGCGTTTTGCGGCGCTGTCGGGGATACGTTCGCGGGCTTGTTCTTCCGTGAGGCCGTGGCGTTTGATCAGGCGTCGTCTTGTGCGCTCCGGGTTGCTGTCCACCTGCACGCGGCTGACGCGCCGATGCTGTGCGTCAGTGGGGATCGGGCTCAGTTCGCCTACTCGCACATGGTCACGCATGCCCGTCAGCCAGCTCTGGGCCATCAGGGCATCCAGCGCTTGCGCACTGCCGTGCAAGCGCAGGCGGTCGCCCAGGCCGGTAGCCCTGCCGCTGATAGCGGGGAAGCTGATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //