Array 1 20230-19408 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB905750.1 Thermus scotoductus DSM 8553 F604DRAFT_scaffold00022.22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20229 29 100.0 32 ............................. AGCGCTTCCTCAAGGCCCCCCTTCCTGAGCGC 20168 29 100.0 32 ............................. GCGGGGGGCGGCCCTGGCGGAGCTTTCCGCCT 20107 29 100.0 32 ............................. CCTGCTGACGTGGCGCTGCCGGGCCTCGAAAC 20046 29 100.0 32 ............................. CGCGTGGGCTCCTACGGCCCGCGTGTCCTGGC 19985 29 100.0 32 ............................. CTCTTCCTGGTCAGGCAGGACCTCGTAGTCAG 19924 29 100.0 31 ............................. GAGGCGTGGGCCATCCTGCGCGGCGCATGGC 19864 29 100.0 33 ............................. GCGGCCTACGAGTACTGGGCCCTCACGGCCCAC 19802 29 100.0 32 ............................. TACCCAACCCTCCCCCCTCGGGAGCGCGGGGA 19741 29 100.0 32 ............................. GCGCCCAGCCCGCTGTACCTCAGCCACCTCCG 19680 29 100.0 32 ............................. GGTTCGCGCTTCATCTGACACCTCATCGTAGT 19619 29 100.0 32 ............................. TTCTTGAGGACGTGCTTCCGGGTGAGCGCCAC 19558 29 100.0 32 ............................. GTGGAGCCCTTGGCCCGGGCTATGGTGCCCCA 19497 29 100.0 32 ............................. GCGCAGGACGCGCCCGTCCTGGAGGAGGAGGC 19436 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 100.0 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : TGCCCACCAAGGAACAGGTCCTCGAGGCCCTAAAGGTGGTCTACGACCCGGAAATCCCCGTGAACATCGTGGACCTGGGCTTGGTCTACGACGTAGAGATCCACGAGAACGGGGTGGTGGACGTCACCATGACCCTCACCGCCATCGGTTGCCCCGCCCAGGACATGGTGAAGGCAGATGCGGAAATGGCGGTGATGCGCCTTCCCGGGGTGCAGGGGGTGAATGTGGAGTTCGTTTGGACGCCTCCCTGGACCCCTGCTAGAATGACCGAGGAAGGCAAGCGCATGATGCGCATGTTCGGGTTCAATGTGTAGGGGGCTCAGCTGGGTGGTATAGTGGGCCTCGAGGTGCGAGGGAGCCAGGCGCGTACAGAAGGCTTTTAGGCTCCGGATGTGCGCCTGGGCTCACGCACGGGGGATCTTGAAAGGCTAATCTGGACTGGCTCCCTTTACATACACATAGAGGGGGGTCGGCGGGGGTTTTTGCCGTCTGGGTCATGT # Right flank : AGGAAGGTCCCCTTGGTCGTCTCCACGCGACCGAAGGGGAAGATGCGAAACTCTCGTGGGGGCTCGCCCCCGGGGACGGGGATGGTCAGGGCATGCCGTGTCATGGTCCACGAAAACCCCCCGGGGCTTCCCGGGGGTAGAGTTATCCGAGCTTAGCTCTAGGATAGCACACCTTGCACTCCGCTACAAGGGGTGCTAGAATCAGGGCAAACCCACCGGGCTGGGCCTGGGTTCCCGATAGCCCGGTGCAGGACGGGCGCCCCTCCAGGGGGGCGTTCCCCGTTTTATTTGGCCACCCACCGGAGAAACCCCACCCGCTGGTTTTGGAGATAGGCGTAGTTTTTGGTCTCTATGAAGGTCAGGGCCGCCAGGACCCCCCGGTGCACCTCGTAGTCCCCACGCACGTGGGGATGGCCCGCCTATCCATACATCCTCAGCGTAGCCCCTTGCCTGTTTTCCGTCGGACGGAAAGCCCTACCTCACCTTTCCCCTTGTTTCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2828-2191 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB905760.1 Thermus scotoductus DSM 8553 F604DRAFT_scaffold00032.32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2827 29 100.0 32 ............................. AGCACGCGGCAAAAGCCGGGGGTGCCCCTAGG 2766 29 100.0 32 ............................. CCGCTCGCATCGCCGAGGAAGCGGCTCGCAAC 2705 29 100.0 33 ............................. TCCACCAGCCGCTCTTGCCCCATCCATGCCCTC 2643 29 100.0 31 ............................. GAGCGGCCTTGCGGTTTTGACGCTAGAAACG 2583 29 100.0 32 ............................. GTCTTGGCCGCCGTGAAGAAGCTGGACGAGAA 2522 29 100.0 32 ............................. TTTCCCTTTGGCGTTGTTCGTTGGCTCCGTCC 2461 29 100.0 31 ............................. CGGTTTGCGGCACGCTTGCCGAGCTTGAACA 2401 29 100.0 32 ............................. ATATAAACCGCTTCACGTCTCGGAGTCATATC 2340 29 100.0 31 ............................. GGCTGCGGCCAGGGTGGTAAGCACCCCTACC 2280 29 100.0 32 ............................. AGTTGGGACCGCTTAACGCTCAATAATCCAGC 2219 29 82.8 0 ........G.T...G.C..C......... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.4 32 GTAGTCCCCACACGCGTGGGGATGGCCCG # Left flank : CCAGAGGAAGAGGTGGACGAGGAGGACCCGACCCGTCCGGGTGGCCTGTGGGACCCGGAGGGAGTGGTGGAGGGTGGGGTGGCCTATGGTGGTGATGATCCTGGAGAGGGTGCCGAGGAGCCTGAGGGGTGAGCTTACTCGGTGGCTGGTGGAGGTGGATACTGGGGTTTTCGTGGGCCGGGTGAGCGCTGCGGTGCGGGAACTCTTGTGGGAGAAGGTGGTGGAAAAAGCGGGTGAGGGCCGCTGCGCCATGGCCTGGCGCACGAATAACGAGCAGGGCTTCGCCCTCCGGCTGCACGGGTATCAGGACCGGGTCCTCAGGGATTTTGATGGTATAGTGCTGGTAGCGGTGCGCAACGCCGAGGCTATGCGAAAGGCGGATAAGTTAAATGGCATAGCCCGGTTCGCACGCGGGGATCTTGACAGTTAATCCTTAGACTGGCTCCCTTTATATACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTGGATCATGT # Right flank : GTAAGGGGAGCAGTGAAAAGGCTTTTGCGCAAGCGCTAGAGGGCAAGTAGCTTCTCGAGGGCCTTGAGGTAACGGCCCTGTCAAGGAGCCCTCCCCACCGGGTTTGGGGCCACTCTCCGCTTAGGGATGCGGGCTCAAGCCTAATACCCTCCCCGGGCTAAAGCACTGGGTGTGGTGCGCGAAAGCCATCTTTCGCGAACATGTACCTGGCACCCTATGCTTGGCTAACCAGAACCGGTTTCGGAATGTTGAGGGAGATCCCGGAGCGCCTATTGGCCCTGGGGGTGGACCTGGTCACCGACAGGAAGCACTCCTGGGATGGACCCGAGATGGAGGCGGTGCCGGGCCACCCCCGGGTCCTGCGCCCCCTCAACTACAGCCCGGCCACCCCCAGGAAGGGCTTCGCGGTTTTGGAACAAGTTGGGAACCCATACCCATGTCTCCACCCTGGACACCCGGGTGCTGCCCAAGGGTACAGCCTAGGTCTCCGACGTGGGGAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12977-14285 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB905760.1 Thermus scotoductus DSM 8553 F604DRAFT_scaffold00032.32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12977 29 100.0 32 ............................. GAGGTGCGGATCCCGGAGACCGGGGCCCCGTA 13038 29 96.6 32 ............................T GCCCGATGGCGAGGAGTAGGCTTCTCCCACGA 13099 29 100.0 32 ............................. ACCTCACCCCCCTCCAGCTCCGCCTGGTGGAG 13160 29 100.0 32 ............................. TCCCCGGCCTAGCTCCACCGTGGCCCACCAGC 13221 29 100.0 32 ............................. GCCCCCCAAGGTCCAAGTCACCTGCTCAACGT 13282 29 100.0 32 ............................. GCCTAGGAGGAGCTTGAGGGGCCAGACCTCGA 13343 29 100.0 31 ............................. CTAAGCCATCAAAGGGGGAGAGGGTCCAGAA 13403 29 100.0 32 ............................. GAGCCATCTGGTGATTGAAACTGAAGTGGGCC 13464 29 100.0 32 ............................. CAAACCTCTCCCTGGAGCGAGCGGCCACCCTG 13525 29 100.0 32 ............................. CTCCTGCCCGTCCAGGTTGAGCTCCTTCACCC 13586 29 100.0 32 ............................. TTCAGCGGCATTACGCACCTCCTTCATCCTCA 13647 29 100.0 32 ............................. CAAGCGCGCCTGTCCCTGGGGCAGGTCCAGGC 13708 29 96.6 32 ............................A AGTAGGACTCGGTATAGGCCTCCACCGCCCTC 13769 29 100.0 32 ............................. CGACTCCCCCACTTTTCGGATGCTGTCGGTAC 13830 29 100.0 31 ............................. GGCTGCTCCGGTGGCCGATGGCACCACCGAG 13890 29 100.0 33 ............................. GGGATAGGCGTCATGGTGGGAGGAGCCCTACGC 13952 29 100.0 32 ............................. TTGTCAATAGTTGTCCGAAGGGGTACATTAGG 14013 29 100.0 32 ............................. TGCTGGCGGCGGGGAGCATGTTCTACGTGGAG 14074 29 100.0 32 ............................. CTCCTCCCGCTCGCGGGCAGACATCTTGAACC 14135 29 96.6 32 ............................T AGGCGGGAGAGGGGGAACAGCCGGAAGCGGAG 14196 29 100.0 32 ............................. CATCGGAGGAGGTGGGATGATGCGCAGGGCAA 14257 29 93.1 0 ..............C............T. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.2 32 GTAGTCCCCACGCATGTGGGGATGGCCCG # Left flank : TCTCATACTGGCGGGTCGGGGCCTGATGATATAAGAGCCTCCCGGCAGCGAAAAGGGCTAGGGCCTCCACCGGATGCAAGGTGGGAGGTCGGTCCGGAATGCGGTAAAGGCCGCGGCCAAGCTGCTCTATCCTGTAACCGGCATGGGACAGGGCCTCGAGGTCCCGCTCCACGGTGCGCACGCTCACACCGTAAAGCTGGGCCAGTTCGGAAACCCGGTGCGGGCGAAGGCTAAGGCGCTCCACCAGGGACAAAAACCGTTCCGCCTTGGACTTCAGGTCCATAGTTGGAAGCATTATAGCCCAAGTTCCGCTATACTGGGGTTACCTGCCCTATCCCTAGCTAGACGTTCAGGGCACCTTGGGGCAGGGGGGGTTCTTGACAAAACATCCCTCGCTTCTCACGGGGTTCGAGGCTTTAAACGGGCCTATTGTCTGGAATAGCCCCCTTTACAGACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTAGGTCATGT # Right flank : GAGAATGTACAAGGTTGCCCCGTAGGATAAGCCCCCCAAAGCTTCGGCCAGGAGGGCCTCCAGCCTTCGCTGGAGGTCCATTTCCAGGGGCCGGAGGGCTAGCTGTAACGCGCCCGTAGGCGTGAGGAGGGAGAAGTGGAGAGTCGCCCGCCTGGGCGTGGGGCTTTCCCTGGAGAAGATCTACGAGAGTGTGGAGCTAGGGACTTCTTTCCAGGCCGACTTGGGGGCCAGGTAGTACCATGGAAATGCCATGGGGCCCGAGGAAGTCAAGGCCAGGATAGGGCCTTACCGGGAAGAGTTGAGGGAGCGTTTTGGGGTGGAGGCCCTCTACCTCTTTGGCTCCTCGGCTCGAGGGGAAGCGGGTGAGGGAAGCGACGTGGACCTTTTGGTGCGCTTTTCCCGTCCCCCGGGCTTTCTGGGCTACATGGGCCTGAAGCTCTTTCTCGAGGACCTTCTAGGCAGACCCGTGGACCTGGTCATGGAGCACACCCTGCGGCCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCATGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7764-7197 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB905762.1 Thermus scotoductus DSM 8553 F604DRAFT_scaffold00034.34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 7763 36 100.0 40 .................................... GCCTCCACCAGGGCCGGCCTGTAGTTCACCGTCACGCTGG 7687 36 100.0 40 .................................... TATGCGTAGGTCGGGTCGTCATCGTCGTCCTCGTCGTAGA 7611 36 100.0 38 .................................... TCGGAGAGGTCGTAGTCGGGGGCGTGGACGTAGATGGA 7537 36 100.0 41 .................................... ACCAAGTCCCAGTTTCCGGGGGTCAGGGTGAGTTTGGCAAG 7460 36 100.0 40 .................................... AGAGTGCCGCAGTAGGCCACCCGCCCGTCCTGGAAGACGA 7384 36 100.0 42 .................................... CTGCCAAACTTCTTCCACGCATTCGGAAAGACCGCGGGAGTT 7306 36 100.0 38 .................................... GTCAAACTCCCACCACGAAAGGGGGAGCCCGGTAAAGT 7232 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 8 36 100.0 40 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : AAGGACGGGTACCCTCTAGGCTGGGCTGTAGGCAGGCTGGTTACCCTCGCCTAGCTACAACCCGCCTAGCCCCTTCTGGGCCCGAGGCCTAATAGGGAGGGTAGTTTTTACCCATCGACAAGGCTTGCAAATGTGACGTGTTCACTTTTACTAGGTGACTTGACACGCCGCAAAGGAATGGTATCGATTGGGTAAGTATTGGTCCGGTTCATCGCAAACGGTATAAAGCCAGGATCCGTTTGACCGAGTACACCGTTACGTTCAAGTGCTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCCTGCGCAAGGGCAATATGCGTTTTCACCTGCTTATCGACCGCTCCTGCAGTGGCTTTGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CTGAAAAGCTCCTGAGTACGGACGTTCTGGAAGATCGCAACCTGCGCGTATTCGGTTTCCAGAGGCCTCAGCGCTTAGAGAAAGGCATGATCTGGGCTTTTCCTGAGGACCTGGAGAAGGCCTTTGCCGATTGGTTACCTGGTACCCTGCCGACCCCTTGACCAGGGCCAAGGGTGGTTTGGGGGTGGTTACGGTGCGTAGGGGCGTCCTGCAGCGCTGGAGGGTCTGGCCTTCCCCGCCCAAGTCCCACCCGCCCAGGGGGCGGAAATCCCAGGCCTCCCAGGACAGAGCACCCTAAAAGCACGCTAGCGGCTCACTCCCACGCTAAACTTCTAGCTTAGCAAGTACCTTTTGCAGGGCAGGGTCCTTCTTGGCCTCGGCCTTCAAATCCTTGGGGTTGGCGAGAAACTTCTTCTCCTGGAGGGCCAGCCGGAGAACGGCTGTTTCCTCAGGGGAGAGGGATACTATGACCAGAGCCCTTTTTCGCAGAAAGTCCGTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 5155-5873 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB905777.1 Thermus scotoductus DSM 8553 F604DRAFT_scaffold00049.49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 5155 36 100.0 40 .................................... GCCTCCACCAGGGCCGGCCTGTAGTTCACCGTCACGCTGG 5231 36 100.0 44 .................................... CCAACCGGTGTAGAGGGCCAAGACCTGTTCTCTGAACATGGTCT 5311 36 100.0 35 .................................... CAGTCCAGTTACCATGCCTCTCAACCACATGACCA 5382 36 100.0 40 .................................... AGAAGAAGAAAAGCACCAAGGCCATCGTGCCGAGCCAGAC 5458 36 100.0 40 .................................... CCTTAGGGTGGCCTTGACCACACCGCTATCAATCAGTCTG 5534 36 100.0 42 .................................... CATAGCTAAGGGCGAGGCTGGACGCGTTTGCCCACCGCTTTC 5612 36 100.0 39 .................................... CCGGGAGGTCAGGCCGGCTCATGAGGGCCTTGACTACAG 5687 36 100.0 40 .................................... TCCACTATCCCCGAGTAGCGTAATCTTAGCTCCTCCTGCT 5763 36 100.0 39 .................................... CGTACTTTGCGAACTCCTCTACGCGCATGTCCTTCAATG 5838 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 10 36 100.0 40 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : CAGCGAAGGCCCTAAATACCCGGGATGTCTTGGAACCTGCGCAGCGGACTTCGGGGGGCAAAACCCCTCCCCGAAGTCCGAGGCCTAGCCCCCCAAAGCCGGAGACCTACCACCGGACCCATACAACCGGCGGGCCGGGGATCATACTATACACAGCTGCATTTTTGTGCCGCAAAGGAAACTACTAAACCCGTAAGGATTGGAGCGTGCGTACTCTACACGACTTCCTTGCACTCTATTGAACTCAGTCAAGCGTTACGTTCAAGTGGTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTGCTTATCGACCGCTCCTGCAGTGGCTTTGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CCCAGGCCACCAGCCTGGGTATTTTGTTTTTATGAAGCGCCTCTATGCCATTGCCTACGACATCCCGGACGACAACCGCAGGGTCAAGATGGCTAACCTGTTGAAAAGCTACGGGGAGCGTGTGCAGCTTTCCGTGTTTGAGTGCTACCTGGACGAAGAGCTTCTCAACGACCTGCGCACCCGAGCCAGAAAGGTGCTGGACCTCTCTCAGGATGCCCTGCGCATCTATCCCGTGTCGGGCGAGGTCCAGATTTTGGGCGTGGGGCGGGTTTACGAGCTGGAGGCCTTTGGGCTGGCCTAGGCCGTGTGCAGATGTCGCCCGGCCCCGGTTCCTTCTGTGGCATCCTAAGAATCATGCAAGACCTGGCTACCCTTTGGGAGGAGTACAAACAGGCGGTACGGGCAGGAGGGGATGCCGTGGGTCTTTACCGGGAGCGCGTCTGGCCTGCCCTGCTGGAACGCTGGCGGCAGGAACCCCCCGTCCACCCTTCGCCTCAGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 200-1304 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB905790.1 Thermus scotoductus DSM 8553 F604DRAFT_scaffold00062.62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 200 36 100.0 40 .................................... TTGGTAATCGGATTCATGAACCCAAATTCCTTCCGAATCA 276 36 100.0 40 .................................... AGCGGGAGCCGTTCCCCATAGGGGCGGGCGTACAGCCACC 352 36 100.0 42 .................................... ACCCAGACTAGAACGCCGCTAACGCTTCCAGGGGGATGTCTT 430 36 100.0 40 .................................... AAGAAGGAGAGGACCACCAGAGCCAGCATCCCCTTGTCCC 506 36 100.0 38 .................................... AACCCGTACCGGCTTGAGAGCTTAATCCTACGGAGCAA 580 36 100.0 42 .................................... CCCGTTCGCTGCCACTGTTTACTGCACAGTGGGCAAGTACGA 658 36 100.0 42 .................................... ATGCTTTTGGACGGTACACGCTATCCACCGTCAAGATGGGTT 736 36 100.0 40 .................................... TCCTGGGGGTCCGGGAGGCCCTGGATGGCCCCGTACAGGG 812 36 100.0 42 .................................... CCTCGTAAGTTTCAGTCCTGAACGTGGTAATTTCCACGTCCA 890 36 100.0 39 .................................... GGGGTTTAAAGGCCAACTCGTTGATGTTGCTGGGAACAT 965 36 100.0 39 .................................... CCCGGTGGCGTTTGGGTCGCTCAGTACGCCCCTCACGGT 1040 36 100.0 41 .................................... ACCCTGAAGTGAGGACCGGCAACGGCGTGTGGATCATTCAG 1117 36 100.0 38 .................................... ACGAGGGCCGTGATTAGCGCCAATGCGTACCCGATAAT 1191 36 100.0 42 .................................... TAAATCACGGGAGAGATCATGAATCGAGGTGTGTAGGGATCA 1269 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 15 36 100.0 40 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : ATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTGCTTATCGACCGCTCCTGCAGTGGCTTTGCAACGAGCTAAACCCTGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACAGTGTTCTAAGGGGGGTACCG # Right flank : CCCCGGGTTTGGCAATATGGACGGGTCCTGGCAAACAGTATGGAAAAATTTCCTCGAGGGTGCCTGCCGTGGCTCGGGCGATGAAGTGGATCGGTGTGGTCATCCGGACGACCCAGGGGGGATCCGTGGATTACGTCCCGTTCCCCGCCCTGGGGGAGGCCAGGGGATGGGCCAGAAAGGAAAAGATGGGTGAGGCCGTCCCTTTTCCCCAGCCCAGGTGGCTTTTCCCTTACCCGGGGGAAGAGTGGTGGGTGGGCTACCAGGAGGGAGGGGAGGTGAAGGTGGTGGCCGTTTTTCCCAAAAGGCTTAGGGCCCTTCCTGATGTGCCCATCCTGTTCCGCTATGCGGAGTACCTGAAGGAGCTCATGGGCCCGGACGCCTCCTCCGACGAACCACGCGCGCGAACTAGGGAGGCTCCTCCCTAGCCCTCGAGGCCAGTACCCTTCTTAGCTACACATCGCGCTACTCCTCGGCGTGAAGCCCAGGTTGTGATAGAACGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA //