Array 1 873011-867936 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013679.1 Xanthomonas oryzae pv. oryzae strain PXO602 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 873010 31 100.0 35 ............................... CTGGTCGTCCCAAGTGGTCAACAGACTCAAAATTC 872944 31 100.0 34 ............................... AGCTGCCACTTCGCCGCAGCCAGGTAGGCCCACA 872879 31 100.0 34 ............................... GTCGTCGTGCTGCTAAAGGTCAGCTGCACCCCCT 872814 31 100.0 36 ............................... AAGCCGTTGCTGTGTCCTCTTCGCCACGATGGCGTA 872747 31 100.0 34 ............................... TGGACATCAAATGGTGAGGCCTTGCGTTTGTGCA 872682 31 100.0 35 ............................... ACCAACAGCACCCACGGCGTCTCCTACAACAATGC 872616 31 100.0 33 ............................... ATTGTCTAGTCTCTCTGTCTCAGTAGTTGGGTA 872552 31 100.0 35 ............................... TGGATGTTCGTAGAGTACCCCGAACCGACGCTTAT 872486 31 100.0 34 ............................... TGGATACTCTGCAATCTTCAGGAAATCCGTTGGT 872421 31 100.0 33 ............................... GTTGCCGTGCTGCTAAAGGTTAGCTGCACACCG 872357 31 100.0 34 ............................... ACGGTGCGGGCATTGATCCAGGGACAGGCCAATA 872292 31 100.0 33 ............................... AAGGACAGCAAGACGGCCAAGGCGGGTGCATGT 872228 31 100.0 33 ............................... AGTGTCTGCGAGCGTGCTTGCCAATAGGCTAGC 872164 31 100.0 34 ............................... TTTCCAAAGACCCATAGAGTTCAGGTGTGCCGCT 872099 31 100.0 35 ............................... CCTTGGTTACAGCGTCAGCGTCGTCACCTATGGCA 872033 31 100.0 34 ............................... TATACCAACCCCAAAAATGACACTGGTATGGGTG 871968 31 100.0 33 ............................... TCAGGGTGCAGGAGTTTATCTACAAATACCGTA 871904 31 100.0 36 ............................... CTGCCCGAACACTTTGTCGAACCGCCCACTGAGGTG 871837 31 100.0 33 ............................... GGTTTTGAGCGTGAACACGAAAGGTACTGGGGA 871773 31 100.0 36 ............................... TGCAAGTCCGAGCCCTGTGGGTTGATCCCTGAGCCC 871706 31 100.0 34 ............................... GTGCTTATCCTCCGTGGCTCTTCCATAATCACAC 871641 31 100.0 35 ............................... GTGCAGTCACTTGTTGAGAGTGGCAAGCAGACTGA 871575 31 100.0 34 ............................... AATGCCTGCCTCTGCACAGCTGTTGACCGTGGCG 871510 31 100.0 33 ............................... CTAAAAACAAGCTCAGGCTAGAGGGACGGCGGA 871446 31 100.0 35 ............................... AACTGGGCAAGTCCTAAGCAGAGGTCAGCGCTGTT 871380 31 100.0 34 ............................... CACCGTAACACACCCGTCAGGGGATCATAAGCCA 871315 31 100.0 34 ............................... TGGGTGCAGCATTTTTAGGGGATGTTGAGCACAA 871250 31 100.0 36 ............................... TTGGTTGGCGCCTTTGACCTGGCTGCGCAGATCTTT 871183 31 100.0 37 ............................... TCTGCTGCTTTCGGCGTGGATTACAACAGCCTCAGCG 871115 31 100.0 34 ............................... GCGGGCAAGGCGCTGTGGCGGGAATGTCAGAAGG 871050 31 100.0 34 ............................... ACCTTGCAGCCCTTAGCTTTGCAATACCCCTCAT 870985 31 100.0 35 ............................... AGCACTGTGCTTGGCGGTATCGGCGGCGGTGCAGG 870919 31 100.0 34 ............................... GGTGGCAGAGTATATGCAGATATCCCACCCGATT 870854 31 100.0 36 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAGT 870787 31 100.0 36 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATGG 870720 31 100.0 34 ............................... GTGCATTACTTCACCAAAGATCGCGCCGACCCCA 870655 31 100.0 36 ............................... CGGGGTCTTATAGCGATAACTGGACGATCGAGCAGG 870588 31 100.0 34 ............................... ACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 870523 31 100.0 34 ............................... TGACTATGACTCTGTCGCCCTGGCTGCGCCGTAT 870458 31 100.0 34 ............................... CGCCGACTCTAGGGCAATGCGCGTTGCTGGAGGG 870393 31 100.0 35 ............................... AAGCTTGATCTTGTTGGCATAGGACCAGCGCGGAA 870327 31 100.0 34 ............................... TGCTGTTAGGTCCGCAGTTACTGTATACACCTGC 870262 31 100.0 33 ............................... GTCACATTGGTTGATCCATCAGCTCCAGATCCT 870198 31 100.0 34 ............................... CCACGGACAGTGCCGAGCGCAAGGGTATCCCACT 870133 31 100.0 34 ............................... GTCTGGAATACACCACTTACCCGACTCATCCTGC 870068 31 100.0 35 ............................... CTTAATCCCGGAGATGTATACGCCACTTCGCCGGC 870002 31 100.0 35 ............................... CACGCCCGGTGATGGTGATGGCCACGGTGATGACC 869936 31 100.0 36 ............................... GCCTTGCTCATGCCGTTGGCGCTGTAGTCCCCGTAG 869869 31 100.0 34 ............................... ACATCGTTCGACAGGGTGATGGCGTTCGGTTGCA 869804 31 100.0 35 ............................... CGCGCCAAGGGGGCACCTGCCCGCTCCAACTCCTC 869738 31 100.0 35 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 869672 31 100.0 34 ............................... GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG 869607 31 100.0 34 ............................... TCAGCGCGTGTGGAGCGTTATCCGTAGGGGCGCT 869542 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 869475 31 100.0 35 ............................... TAGTTGTGACGATGGATGCTTCTACAATTTCACCA 869409 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 869344 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 869277 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 869211 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 869145 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 869078 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 869012 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 868947 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 868883 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 868818 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 868752 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 868686 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 868621 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 868556 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 868490 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 868424 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 868360 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 868293 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 868228 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 868163 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 868096 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 868031 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 867966 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 78 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //