Array 1 107137-106149 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAAR01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3270_R1 NODE_15_length_107149_cov_0.770378_ID_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107136 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107075 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107014 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106953 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106892 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106830 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106727 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106666 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106605 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106544 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106483 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106422 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106361 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106300 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106239 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106178 29 96.6 0 A............................ | A [106151] ========== ====== ====== ====== ============================= ========================================================================== ================== 16 29 99.6 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTCGCCCGCTGC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 931-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAAR01000087.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3270_R1 NODE_29_length_63446_cov_0.744234_ID_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 930 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 869 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 808 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 747 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 686 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 625 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 564 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 502 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 441 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 380 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 319 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 258 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 197 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 136 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 75 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GACGCCCCGAATGTGTTTGCCTCGCCCGCTGCCGTGTTCCCCGCGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18555-17062 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAAR01000087.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3270_R1 NODE_29_length_63446_cov_0.744234_ID_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18554 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 18493 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 18432 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 18371 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 18310 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 18249 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 18188 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 18127 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 18066 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 18005 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 17944 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 17883 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 17822 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 17761 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 17700 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 17639 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 17577 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 17516 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 17455 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 17394 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 17333 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 17272 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 17211 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 17150 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 17089 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //