Array 1 43673-43906 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV809550.1 Streptococcus sp. HMSC064H09 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 43673 36 100.0 30 .................................... CAAGGACTTTGATAGATACCAATATTACCC 43739 36 100.0 30 .................................... TGCATTGCACTTGTTTTATATGTTTTGTCA 43805 36 97.2 30 ............................T....... TGAATCCATACAGGTTGAGATAGAGCCTCA 43871 36 83.3 0 ............................T..NNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.1 30 GTTTTTGTACTCTCAAGATTTAAGTAACCGTACAAC # Left flank : TTGATAGTTTTATTTCAGTGGAAACATATGATAGTTTTTATAAGCAAATTGGTCGACTAGTCAAAAAGTATCCAAACCTAACCTTTATTTTATTTCCAAGTGATCAATGCTATTTAAAGATTGATGAGGAAAATAGTAGGTTTGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTAGAGTTTATGTATGAAAGTGTGGCGAAACACTATCCAAGCAATAATTTTCCAACGAGAGACGGTTTTAGGATGTCCTTAGAGACTGTGACGCCTTATTTGTTAACAAAAATGACGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATTTTGAATATCTTAAATCAATTGTTTCATTTTAATTACCGTATAAGATATCCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGAATTGACAATGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACGCGATAAACATAGGGATTGTCAGGTTGACCGACCTCTTTAACCTCAGTCAAATTGAGGATAGGGAGGCTCTGTTTAAGATTTTGATAATAATCCACAGTGATGGTACCAGTGACTTTTACCCAGGTATTATCCTTGAAGGTTTGGTCACTTCCTGTTGTCGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATAACCCTTGGTCTGTGGATCATTGTAAACAAAGCCAGTATAGGTGACCTTCTTGCCCACAAAATCGTTAGGATAGAGGTAGATGAGCTCCATAACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTT # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACCGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 32361-32678 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV809625.1 Streptococcus sp. HMSC064H09 Scaffold545, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 32361 33 100.0 38 ................................. AACTTTACGATAGCAAAACGACCAGCGTAGCAATTTTC 32432 33 100.0 38 ................................. AACAGTCTTCTGACTGGTTGTTAATCCATTCTTGTAGT 32503 33 100.0 38 ................................. AACCTTATTGTGTTTACGTCTACCCCATTTCATCCCTT 32574 33 100.0 39 ................................. AACCTTAAATCGCATTTCCAACATGTAAGAACCCCCACC 32646 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ======================================= ================== 5 33 100.0 38 GATATAAACCTAATTACCTCGAGAGGGGACGGA # Left flank : AGAGTTTGATTAGGGCTTTTGGAGAACTGGACCCTAGTCTTTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTATTTTAATCTCAGTGAAGAAGAACGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCCAAGTTACTTGAAGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGAGCTTCTATAAGGCTGATGAAGAAGACAGCATAATCGTATATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACAATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGGCCTGTAATCATATGGTACAATATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGTCTCTAGCAACTGTCTAGAGCACAAGATATGGG # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAACCTAATTACCTCGAGAGGGGACGGAAACACAGATGCAGCATAAATAGTGATATTGCCAAATGCGATATAAACCCACTCATCTCGCGAGGGGACGGTAACTTTTCGTTTAACGTTTCATTAATTAATTCGTTCAGATATAAACCTATCCACCCCAAGAGGGGACGGAAACTCCCCGACATTAACGCTATCGTACTGTTCCTTGCTGGGATATAAATCTATATACCTCGAGAGGGGACGGAAACAAAATCTTTGTCAAACATCGTTGACCTCCAATTGTTTAGATATAAACCTATTCACCTCGAGAGGGGACGGAAACACGTGGATTGTCTGGCGTAGTGGTTAAAGCTACTGTGATATAAACCTATGTACCTCGAGAGGGGACGGTTACTCAATG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 32776-33456 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV809625.1 Streptococcus sp. HMSC064H09 Scaffold545, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 32776 36 86.1 35 NNN.........A.T..................... ACAGATGCAGCATAAATAGTGATATTGCCAAATGC 32847 36 86.1 34 ..........C.C...T....C..........T... TTTTCGTTTAACGTTTCATTAATTAATTCGTTCA 32917 36 91.7 37 .............C....C.A............... TCCCCGACATTAACGCTATCGTACTGTTCCTTGCTGG 32990 36 91.7 38 ........T....AT..................... AAAATCTTTGTCAAACATCGTTGACCTCCAATTGTTTA 33064 36 100.0 36 .................................... ACGTGGATTGTCTGGCGTAGTGGTTAAAGCTACTGT 33136 36 88.9 27 .............GT.................TT.. TCAATGTAATCAATCCTATTATTTAGT Deletion [33199] 33199 36 83.3 44 TC.T.........AT...C................. GCAGGAGTTTCACTCGTTCTTGGTGCAGTACTTGGTAAAGTACG 33279 36 91.7 36 .......C.....CT..................... CTGCTAAATATGCTTCAAAAAGATCATTAATGTTTT 33351 36 88.9 34 .......C.....CT.............G....... AGTATTATTTTTTTGTTCTTCCATTGTTGTTCTT 33421 36 83.3 0 ....A...T...CCT.................T... | ========== ====== ====== ====== ==================================== ============================================ ================== 10 36 89.2 36 GATATAAACCTATTCACCTCGAGAGGGGACGGAAAC # Left flank : TAATCATATGGTACAATATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGTCTCTAGCAACTGTCTAGAGCACAAGATATGGGGATATAAACCTAATTACCTCGAGAGGGGACGGAAACTTTACGATAGCAAAACGACCAGCGTAGCAATTTTCGATATAAACCTAATTACCTCGAGAGGGGACGGAAACAGTCTTCTGACTGGTTGTTAATCCATTCTTGTAGTGATATAAACCTAATTACCTCGAGAGGGGACGGAAACCTTATTGTGTTTACGTCTACCCCATTTCATCCCTTGATATAAACCTAATTACCTCGAGAGGGGACGGAAACCTTAAATCGCATTTCCAACATGTAAGAACCCCCACCGATATAAACCTAATTACCTCGAGAGGGGACGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGTAAGGTTGTAGAGTTTAGGAGTTGCCTTAGATTTGATATAACCCTACATACCTCGCGAGAGGACTTTTTTGAAAATTTTGAAAACAGTCTTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGGTGAAAAGTACTTTCAGCTTTTGGGGTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTAGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAGACACGCAGTGGGTTGTGCATATGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTAAAGATAAAAGAGGTGTCCTTAAATGACTTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGT # Questionable array : NO Score: 3.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:-1.5, 6:0.25, 7:-0.00, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTATTCACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [13-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //