Array 1 230702-228595 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDUC01000007.1 Salmonella enterica subsp. enterica serovar Braenderup strain 12 NODE_7_length_253656_cov_24.8129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 230701 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 230640 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 230579 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 230518 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 230456 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 230395 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 230334 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 230273 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 230212 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 230151 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 230090 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 230029 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 229968 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 229907 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 229846 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 229785 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 229723 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 229662 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 229600 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 229539 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 229478 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 229417 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 229356 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 229295 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 229234 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 229173 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 229112 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 229051 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 228990 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 228929 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 228868 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 228807 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 228746 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 228685 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 228624 29 89.7 0 A...........TC............... | A [228597] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 248086-246960 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDUC01000007.1 Salmonella enterica subsp. enterica serovar Braenderup strain 12 NODE_7_length_253656_cov_24.8129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 248085 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 248024 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 247963 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 247902 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 247841 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 247780 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 247719 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 247658 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 247597 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 247536 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 247475 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 247414 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 247353 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 247292 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 247231 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 247170 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 247109 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 247048 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 246987 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //