Array 1 4632-4400 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIZ01000132.1 Staphylococcus pseudintermedius strain ST497 5 83_S41_L001_R1_001_contig_132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4631 36 100.0 29 .................................... GCTAAAAGTCAATGTTACTTCATTCCTTA 4566 36 100.0 29 .................................... TCACAAACCGTTTATGAAAAAAATACATC 4501 36 100.0 30 .................................... CGAAAGTAAAGATAGTATGCAAGGTGCAAG 4435 36 80.6 0 ..........................AC.TC.TC.A | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.2 30 GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Left flank : AGAAAGAAGTAAAACTTTCCTTCGTGATTTCTTCTTCTACTTCG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 43-1323 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIZ01000164.1 Staphylococcus pseudintermedius strain ST497 5 83_S41_L001_R1_001_contig_164, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 43 36 100.0 29 .................................... GATGAACCTAAAAAGTCATCAATGTTTGA 108 36 100.0 29 .................................... ATATTCACGCAATTTATGCCACTCTTTCA 173 36 100.0 29 .................................... TTGAAACAGAAACACTTAACGATTCCGAT 238 36 100.0 30 .................................... TGCAGGAATCGGTTTTGTCCTGTATGCGCG 304 36 100.0 30 .................................... TATTTAAATTACGTTTCGCACGTTCAATCT 370 36 100.0 29 .................................... AAGTCATCAGCCGAAAACGCTTCTGATGT 435 36 100.0 29 .................................... GGAGAAAGCTTTGTGTCGACAGATACTAA 500 36 100.0 29 .................................... AATGTGCTTTTATACGTTGTTATCAGTTG 565 36 100.0 29 .................................... ATTTTGTACCGAATAGCGTTTCAGGGCGC 630 36 100.0 30 .................................... AGAATACGCCGTCGTCTTACCGCTTGCAGT 696 36 100.0 29 .................................... CATTAACTGCTTTGTCAAACTCACTAATT 761 36 100.0 30 .................................... GGAAAATGTGGTAATGAAGGAGGATTTTGA 827 36 100.0 30 .................................... AGAGAAGAAATTGTGGCAATACGGTATTGT 893 36 100.0 31 .................................... CGTCGATTTCGACATAATCAATCGCCTTATG 960 36 100.0 29 .................................... AATATAAAAGGCGCTAAGAGGCGTTATAT 1025 36 100.0 30 .................................... TGAGCCTTTATCATTTAGAACAGCTAGAGT 1091 36 97.2 30 ............................A....... ACAATACTTGATGCAGGCAATAACAAGCTG 1157 36 97.2 30 ............................A....... ACAATACTTGATGCAGGCAATAACAAGCTG 1223 36 97.2 29 ............................A....... GGACAACAACAAGATATTGCTCAAGCCTA 1288 36 97.2 0 ............................A....... | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.4 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : AAAGAGGTAAAACATATAACATGTCGATTAAGACGTCTTTCGG # Right flank : TTTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //