Array 1 3420542-3421230 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP038613.1 Arsenophonus nasoniae strain FIN chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
   3420542	    28	 100.0	    32	............................	CGTTCATCAATTTCTGGCGTAATACGAAAGGT 	
   3420602	    28	 100.0	    32	............................	CTAAGGAGTCGAATGACCGCACTGCGCCAGAC 	
   3420662	    28	 100.0	    33	............................	TGCTTCGGGGGTGTTCATGATTTAAGTACTGTG	
   3420723	    28	 100.0	    32	............................	GATAACTGGGCTGACGAATCTGACAATTTCTG 	
   3420783	    28	 100.0	    32	............................	GAAACGTTTTATGATCTCTCTCCCACCCGAAA 	
   3420843	    28	 100.0	    32	............................	TTAAGCAACGGTACCAATGTGACGGTAAATGA 	
   3420903	    28	 100.0	    32	............................	ACCAAAAACGTGGAATTCGCCAATGACAGGCT 	
   3420963	    28	 100.0	    32	............................	GAATTACAAACCATGAATAACATCTACACCAA 	
   3421023	    28	 100.0	    32	............................	CCCAACGCCCCACGATGCGGTATTCAAGCAGT 	
   3421083	    28	 100.0	    32	............................	ATCAACATCTTTGAGTGTGGAACACAAAAAGA 	
   3421143	    28	  92.9	    32	....................T......G	TTTTGTTATAACATAAAGATATAAATTAATTG 	
   3421203	    28	  75.0	     0	.C.T.T.A..C.....C..........G	|                                	
==========	======	======	======	============================	=================================	==================
        12	    28	  97.3	    32	GTTCACTGCCACATAGGCAGCTTAGAAA	                                 	       

# Left flank :   TTCTCAAACGGTAAAACTGTACCATCGCGAGTAAAACCTGTTAGCTATATCCGTCAACATATTAAAGGTGAAAATCGCATTAGACAGGCGATGCTCAGTAAAGCACAACGCTGGTCTGCTAAAACCGGCAAACCGTTAATAGAGTGTTTAAAACAACTGGAGAACACCCGACCACAAAAGCAATGTGACTTACCTTTTATTTGGTTAGAGAGCCAGCAAACTAAACAACAGATAGGAAAGCATAATAAATTTCCCTTATTTATTAAACAGACAGAAAAAAAAGAAGCGAAAAATGGCCCATTTACCTGCTATGGACTAAGCCAGTCTATGTCCAACCAGGAATTAATTGCTACCGTACCCCATTTTTGACCTTTAATTTTCGCTCTTTAAAAATATAATTATAAAACAATAAGTTGCAATTGTAGTAAAAATAGAAGGGTAAAATACCATTTTTTAGCTAACTACTTGTTGCAACTTATTTATTTTGATTTATGCTATTG
# Right flank :  GTTGGAAGATTATTAACAAAAACAGAATATCGATGACATAATCAAAAAGTTGCCAATGACAATCGCTTAACCAGACAACGGCAACAAATGGAACGGAATAGACTAGGTGACATTATTGCAGAAAAATCCTGTGTGATTAGCAATCAAATGCTCTGTCAGACGAAGTCAGCGATACCACAAATCATTTAAGGAATTTTAGGAAAAACATATTACCATTACTTGCAATAGGAAAAAATTTAATGCCTAAAAATTTTTTTTCAAATACAGAAAAAAATAATTATATCAAGCAGCATCTGGATAAACAATTAGCTAAATATGACAAGGTAAACTACGTCTACGCTGTAATGAATAAAAAAAACACCGATGACATGATAATTATTAGTGATTTATCTGATGAGCTTGTTAATAATTACCTTAACCAGAAAACGCAAAATATTGATCCTGTCATTATTAAGGCATTAAATCAGCTTGCTCCTTTTTCATGGGATGAAAATATTAAA

# Questionable array : NO	 Score: 6.12
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCACTGCCACATAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:53.57%AT]
# 	Reference repeat match prediction:         F [matched GTTCACTGCCACATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.20,-8.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.37   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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