Array 1 220213-220364 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML956110.1 Streptomyces sp. FR-008 Scaffold1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================== ================== 220213 23 100.0 41 ....................... ATCTTTGGGCTTGGGCCCGGGGGAACCTGACGGTTCAGGAC 220277 23 100.0 42 ....................... GGTTTTGGGCCGAGGTCCGGATCGGACTCGTCCGTTCAAGAT 220342 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ========================================== ================== 3 23 100.0 42 GGCCTCAAGCGCCGGCCGGGCTG # Left flank : TCTGAATATTTCATGTTGTCAAGCAACCGGCTATCCTGGGACCCATGGCCACCCGCACGGACCCCTTGACCCTCGAAGTCGTCGAGCTGATCGGCGCTGTCGTGGCGCGGTACCACGAGGAGTACGACCGGGCCGCCGCCGAGCAGGCACTCACCGGCGCGCAGGCGCGTGTACTGGGTCTGCTGTCCCTTGAGGCGATGCCCATGCGGCAGATCGCCCGGCGGCTCAAGTGCGAGCCGTCGAACGTCACCGGGATCGTGGACCGGCTCGCCCTGCGGGGGCTGGTCGAGCGGCAGGCCGATCCCGGGGACCGGCGGATCAAGGTGGCCGCTCTGACCGCGGAGGGGCGTGAGGTCGCGCGGGTGCTGCGGGACTCCCTTGATTTTGCTCGGGAACCGCTTGCCGGGTTCTCCCGGGAGGAGCGGGAGGTCCTCCGGGGGATGTTGCGGAGGATGGCCGGGGAGTGAGTCTTCCCTCCCCGGCAGGGGGTGCGGTGGGGT # Right flank : GTTTTTCGGCGGTCGGCCAGTTGCCTCTCGGCGGTCGTGCCCGCTGTTTTTCGCGGTGGGGTGGGGGCTGCGGACAATGGGGAGATGTGCGCTGCTGTCGGTGGGACCAGTTCGTTCGGGTCGCTTGAGTTTCAGTTGGTGTTGTTGCGGCGGATGGCTGATTTTCAGGCGGGGATGGTGGAGGAGGCGCGGCGGGAGCTGGGGGTGGACGCCGGCGCCATGCGGGAGGCGAACCGGCGGTGGCAGGCGATGGTGCGGTCACCCAGGGGGCGGCGGCGGGCCGGGTTGTTGCGGTCGGTGCTGGGGGTGCCGGAGGGCGTGGAGCGGCGGGTCGTGGGGGATCTGGAGTGTGAGGCGTTGCGGTGGCCGGTGGTGCTCTGGCCGGCGTTGCGGTTCGAGGCGGTGGTGGCGCCCGGGGGTGCGTTGTGGAACGAGTGGCTGGTGCGGGGGCCCGGGGGTGCGCCGCCCGCTCCGGCGGCGCTGGATGCCCTGCGGCCCTG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCCTCAAGCGCCGGCCGGGCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 911935-912146 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML956110.1 Streptomyces sp. FR-008 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 911935 29 100.0 32 ............................. TGCTTCATCTTGACGCCGTTCCGGACCTTGTA 911996 29 100.0 32 ............................. ACCTTCGACGTGATCACCCTGGTCGCGTTGGC 912057 29 93.1 32 ....C..................A..... GAGGCCGCTCCGGTCGTCACGAACATCATCGA 912118 29 86.2 0 ..............G......CAA..... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GTGGTCCCCGCGCACGCGGGGGTGGCCCC # Left flank : GCAAGCCCACACCGCGCCGGCCTCTACGCCACCGGCAAAGTCCGGTACCAGGCGAACTGCTCGTGAGTGGGCATCCAGTGCTGGCCGCACCGGGAGCAGTACCAGCGCCAGTTGTCGGGGTCGTTGCGGAGGTAGGTCGTGTCCTTCCAGAGCCGGCCGTGGATGTCCGTGTGGCAGGCCCGGTCAGGACAGGGCGGGGGAACGGGCGTGGTGCGCGGGCGAGTTGTGGTCAGCATGGACGCCTCCGTGACTCGATGGGGTCAGGAGGGTGAAACGAGGGGGCTCGGGGCTGGGTGTGGGGCCGGGGCAAGGTGCGTTCGTTCGCGTGATGAATGGGGGATGAGATGCGCGGGGGGCCGAGGTCTGCTCCGTCGCCTCGGTCCGCTGCGTAGGATCTAGCGAGGGCTCAAGGCTAGGTGGGCATTTTGGGCCGAATGTCGCTATCGGTGAAGCTTGCAGAAACTGGGGCAGGGGCGCCGTAAACCTGCTGGTCAGGGAGA # Right flank : CACCCCGCCTCACCCCGACCCGGCGCCAAGCGCCGCCACCCGCCTTGCTCCCCCCACCCCCACCTCCTACCATGAATGCGCTTTCACAACGCGTGAGGCGGGTCGGTGGGCTCGGGTTCTGGATGGTCGGAGCGGGCGGGACGGGATGAGGGTAGGGGCGCGTGGGTGACGGGGTGGCGGGGACGCCGACGGTGTATGACGTGGCCGGGCGGGCGGGGGTGTCGATCGCGACCGTGTCGCGGGTGTACCGGAGTCCGGAGTCGGTGCGGGAGGCCACGCGGGAGAAGGTGCTCGTGGCCGCGCGGGAGCTGGGGTACGTGCCCAGTGGGAGTGCGCGCGGGCTGGCCAGCCGGTCGACGGGGGTGCTGGGGCTCTGCTTCCCCGACTACTCCGACCCGGACGCCGAGAGCGAGGCGGCCACGGTGGACGCCGACGACGACCACGCCTTCATGCTCTACTCCGACCAGATCATCCGGGGTATGGAGCGGGCCGCGCGACGG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.20,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21235-21022 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWXN01000006.1 Streptomyces sp. FR-008 Scaffold12_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 21234 24 95.8 40 G....................... TTCTTTTCGGGGTGCGGGCCGTTCCCCGGTCCCGGTGGGG 21170 24 100.0 38 ........................ GTTTTGGCCGGGCTTCGCTGTGCCGTGCCGGTCACTGA 21108 24 100.0 38 ........................ GTTTTGGCCGGGGTTCGTTGTGCCGTGCCGGTCACTGA 21046 24 91.7 0 ..........G.....T....... | C [21024] ========== ====== ====== ====== ======================== ======================================== ================== 4 24 96.9 39 TGGCCTCAAGCGCCGGCCGGGCTG # Left flank : CCTGGGAGGCGGCGCACCGGGCGGCGCGAGGAAAGGAGCCCTCCCCATGGCACTCGGCGTACAGGAGCGCGAGGAATTCCTCGCCGGCCGGCATGTGGCCGCCCTCGCGGTGGAGCGGGGGGACGGGCGGGCGCCGCTGACGGTGCCCCTCTGGTACTGGTACGTGCCCGGTGGGGAGGTCCGGGTGATCACGGGGGCCGACTCCGTCAAGGCCCGGTTCATCTCGGCCGCGGGGCGGTTCAGTCTGCTGGTGCAGCAGACGGCGCCCACGTATCTGTACGTCAGTGTGGACGGGCCTGTCGTGTCGGCCACGCCGACCACCGTGACCGACATGGTCACCGAGGCGTCGCGGTATCTCGACCCCGAGGGGGTCGGTGACTACGTGTCCGGGAGCGGGGTCACCGAGAGCGACTCGGCCGGGCTGCTCACTCTGGCCATGCGGCCCGAGCACTGGCTGTCCGCCGATCTCGGCTGGGGGTAGCGGGGCCGGGCCGCAGCCG # Right flank : TGTCGGGCGGCTCAGAGGTTCAGGGGGTGGCCGGTGGTGGCGTCGACGTGGGTGGGGACGGGGTCGTGGTGGGTGCCGACGGTGGGGGTGCCGGTGGGTTCGAAGAGGAGGATGGTGGCGCCGGTGGGGGTGTGGGGCTTGTGTGCGGTACCTCGGGGGACGGTGAAGACGGAGCCCTGGGGGAGGTGGACGGTGCGTTCTCCGGCGGGCTCGCGCAGGGAGATGTGGAGGTCGCCGGTGAGGACGAGGAAGAACTCGTCAGTGTCGTCGTGGGCGTGCCAGAGGTGTTCGCCCTCGACCTTGGCGACGCGGACGTCGTAGTCGTTGACGCGGGCGACGATGCGGGGGCTCCACAGGGCGTCGAAGGAGGCCAGGGCCTGGGCGAGGGCGACGGGGTCGTTGCTCATGGGGTCATCCTGGGGCGTTCCGCCGGGACGTCGTGAGTGCTAGGAATCGCACATGGCGAAAGAATCCTCGCAGGAGCGGCAAGGGGCGGAGCC # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGCCTCAAGCGCCGGCCGGGCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 22753-22420 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML956111.1 Streptomyces sp. FR-008 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22752 28 92.9 33 A...C....................... GGCGCTGATGGGCGCTCCCGAGCCCGTCCTTGT 22691 28 96.4 33 ...........A................ GGGGGAGGGCAACCCCCCGAGCGGCACCCCGGC 22630 28 100.0 33 ............................ GCAGGTCAGGGGCTGGCTGGACGATCCGGACAC 22569 28 100.0 33 ............................ GCCTCACGGCCACCGCTCGGCTTCACGATGCGC 22508 28 100.0 33 ............................ GGCGACGGTGAAGGCGAAGCGCCCCACCCAGCG 22447 28 89.3 0 ....................C...GC.. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 96.4 33 GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Left flank : CACCGACGCCGACATCACCCGAGCCGTCGAAGCCGGCGCCATCGGCTACCTCCTGAAAGCCGAACGCCCCGAGGAACTCTTCACCGCCATCAGGGCTGCGGCCTCGGGGCGTACGGCGTTGTCCCCGCCTGTGGCGCAGAGGGTGATGACTCACTTGCGGAACCCGCAGCCGGAGTTGACCCCGAGGGAGCGGGACATTCTGCGGCACTTGACGCAAGGGCTGGGGAACCGGGAGATCGCCAGGGCGTTGTTCATCAGCGAGGCGACGGTGAAGACCCATCTGGGCCGGATTTACCAGAAGTTGGGGGTGGAGACACGGGCGGGGGCGGTGGCTGTGGGAAAGGAGCGGCGGTTGTTGGGGTGAGGGGGGCGGCAGGGGGTGGGTTCGTGGATTGGGGGGTGGGGTGGGTGGGGGGGTGCGTAGGTTGGGGGGTGAGTGGGAGGGTGCGGTGATGGGCAAAGGGATGGCAAAGGCCGTCCGAAGGTGCAGGTGGGGGAGG # Right flank : CCGCCAAACCTGACAGGTGTTCCCCCACCCAACTCCCCGGCCGAACCGGACGACACCCATGTCACTGAATCGCAAGCGCCCCGGAGCCCGCAAAGGCAACACACCCACCCCGCCCCGCCCTGCTCGCGCGTCAGCCTCACCAAGGGCACCCCCGCGTCGCCGACCAAAACACCCCCGCCAGAACACCCCTAGAACCGGACAAAACGCCCCCACCAACAGCAGCCACGCCAACCACCCTCAACATCACGAACACACGATGGTCACGAAATCGCCACAGGCGGAGCATCCGGCACTCCCGTCATACCTCGCAGCCCCACACTGAGCGGACGCATCCGCATTCAGGGGGAATCATGAGACGCCAACTCGCCATCGCCGCAGCATCCTTCACCGCCGTACTCGGCCTCGCCGCCTGCGACACGGAGGTCACCTCCTCCCCCGACAAGCCCGCGGCCGCCGACGACGCGAAGCCCGGCAAGGAAGCCGACAAGGCCGAACAGGCT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGAGGGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 444234-444014 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML956111.1 Streptomyces sp. FR-008 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================== ================== 444233 27 100.0 34 ........................... CCGAACTTCCGGCTGGCGCTAGCCGAAGCTCGCC 444172 27 100.0 34 ........................... CCGTGCTGATCTCGCGGGCGCGGTCCTCTTCGCC 444111 27 96.3 40 ......................G.... CCTTCTCCCGGTCGCTGGGCTTGGGCTTCTTCTTCTGCTG 444044 27 96.3 0 .................A......... | T,CGC [444015,444031] ========== ====== ====== ====== =========================== ======================================== ================== 4 27 98.2 36 CTGCTCCCCGCGCGTGCGGGGTTGGTC # Left flank : GCCACCGCGATACGGCTCGCCGCCGGGGGCGGGCGGTACGTGGACGACGGGCTCGCGATGAGCCTGCTCCGAGCGATGGACATGCCGCTCTCACCACGCGAGGTGCGGGTGCTGAGCAGGGCCGCGCAGGGGGACTCGGTGGCGGAGATCGCCCGGGGGTTGTGCCTGTCGCACGGGACCGTGCGGAACTACATCGCTTCGGCTACGCGGAAGGTGGGGGCGAGGAACCGGGTGGATGCGATTCGGATCAGCCGGGCGGCGGGGTGGGTTTGAGGGGGTGGGGTTGGGACTTGGCGGGTGGGGTTGGCTCGGGTGAGGGTGAGGAGTGGGTCGGGGTGTGAGTGGCTGGAAGGGGGGCGCGGGAGATCTGTCGGGTTCAATGGGGGCGGGTGCTGGGTGGACACCACGGAGGGGATATGAGGCATTCGCCCGCATTGCCGGAATCTTTGAAGCTTGCAGGAGAGAGTGACTGGGCTGAGTGAAACCCCAGGTCAGCGAGA # Right flank : CCTCCCGGCCCCCGAGCAAGCTCCCGGCAACCGCCGCTCCCCACCCACGCCTAGGTCGACGCGGTGCCCCGGCTCCCCGCCGCCGAAGGCTCCCCCAGCCCCGCCGCCAGTTCCCCGTACAAGGCCGACTCCCGAAGTAGCGAGGCATGGGTCCCCAGGTAAGGGGTCGCCCCGTCCAAGAGCAGGACGCGTTGCCCAGGTTCAGGCGCCGGAAAGTGGTGGCTCACCGTGATGACCGTGGCCGGGTGGGAAGCGAAGGCCAGCTCGGTCGCAGCCCGTGCACCTGCGTCCAGGTGGGCCGTGGGTTCGTCCAGAAGCAGCAATGGCGTAGGTGTCAGCCAAGCCCGGGCCAAAGCGATGCGGCGGCGTTCGGACGGGGTGAGGTGGTCCGGGCGGAGGGAGTGGGAGGGGTCAGCTGCGAGCGGGGCCAGGGCGAAGGTGTCGATGGCTTCCGTGATACGAGGGGCCGGGGCGTTCGAGGCGAGGTAGGTGAGGTTGTC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGTTGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGTTGGTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 68694-68358 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML956122.1 Streptomyces sp. FR-008 Scaffold15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 68693 28 92.9 33 ........T....G.............. GACCCGGTGACCCCCTCGAGCGCAGACCGCCTC 68632 28 96.4 33 ....C....................... CTGCGCCTTCAGCAGCGCGTTGCCGGTCATGCC 68571 28 100.0 33 ............................ GTGCCTTGGTCTCCAGCGCGGTGTAGGAGGAGA 68510 28 100.0 33 ............................ CGAGGGCTACGTCCTGATCCGCCGCAAGTACGG 68449 28 96.4 33 .............G.............. GACGTCGCCGCTCGATGGCGACTCGATCCGGAG T [68423] 68387 28 89.3 0 .C.......T.G................ | C,A [68361,68381] ========== ====== ====== ====== ============================ ================================= ================== 6 28 95.8 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : TACTGGTCCCTTCGACAACGACACAGCCGCGGACTTCGCCAACGCCCTCGACGAAGCCGAGCCCGAGGCTCGCGAAGCCCTGATCCGAGGCGTCCTCGTCCGGACGATCGACGCAACCGGCTATCTCGCGGATGCGGAAGAGGCGGTGGCCGCCGCCGCCTTGATCGCGGCGCAATGCCCGGGAGGCGAACCCGTCGACATGTCCTACGGCCCGGAAACGCCGATGCCCGTGTTCCCTTCCGACCTTGGGGCACTCGCCGACGAAGCCCTCGCCCGCATCGTCAACGACCAGGATGGGCTGGCCTCAAATTGGGTCGACTCGCAGGACTGGAAGCAGTGGCGAGCCATACTGACACGCCTTCGTGCAGTGCTTGCCCCGACACCACCGTCCATTGCTCTCTTCAACGTCCAGTCGTAACGGAGCGTCACTCAGCACGGAGCTGAGTCAGAACCTCTTGAAGTGAACGAAACCAGTTGACCGCCACCCACGACACCGGCAG # Right flank : ACTCCGTGCCCCCGTTGCCACCCCGCCCCTGAAGCGCTCCATGCCCGTGTGGTTCCCCATCAGGCGGAACGCGAACAGATGTTGGACCTGAGCTGATGACTGGCACCAGGTAGGTAGTTGGCGAACAAGCTTCCTGCGCAACCTCACGGCCTATCACGTGCCCCTCCTTGGTCGTCGGTCTCTCTCACCGGTGAGACCGACCGCCGAGGCCCCCCGGCCGGCTGTCCCCCGACGTGCACCAGGAAGTCCTGCTTCTGGTCGAGTACGTCGACAAGGACGTCGCCGTTCTCACACAGATATGCCGAGTCCCCCAGGCCCTCGTGACACGGCCCTGAGGCCCTGGTCTGATCAGCGGACCGGGTCAGCGGGTGTTGAGGACCTGCGCCTCACGCAGGTCAGCCACCAGCTCCGTGGTGCGGGTAAGGCTGGTCACCGCCCGCCACGACGCCCTGCGTACTTCGCCGTGACGGGGCTGGCCCTGGGCGTCCTGTTCGCCCCAG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70057-69293 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML956122.1 Streptomyces sp. FR-008 Scaffold15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 70056 28 100.0 33 ............................ GGCCGAGGAGGGCCGCAGGCAGGCGGAGAGCCG 69995 28 100.0 33 ............................ GTGCGACTGCCTGCCGTTCTGGCCGGACTGCCC 69934 28 96.4 33 ...C........................ GCCCGCGCCGCCCAGCAACGCGCCGAGGAGCAG 69873 28 100.0 33 ............................ TCGCCACACCTATGCATCACGACCCGAAGGACA 69812 28 100.0 33 ............................ GGCGGCGAGGCCCTGGTGACCGACCCGGCCGCC 69751 28 100.0 33 ............................ GACAACCAGCGGCTGATCACGGGCGCCCGTGCC 69690 28 100.0 34 ............................ AGCTCCGGCTGCGCCTTGTCGATTCCCTCGATGA 69628 28 100.0 33 ............................ GATGGTCGAGTACTCGTTGTAGGTGTCAGCGAT 69567 28 100.0 33 ............................ CGGGCCGCCAGGGGGGCGCACATCGACCCCAGC 69506 28 100.0 33 ............................ GTACGACGCAGACACCGCGACCCTCACCCTCCA 69445 28 100.0 33 ............................ GGTGTACGCAGAGAACACGGTCGGTGTGTTGGC 69384 28 100.0 33 ............................ GCTCAGCAACGAGCAGATCGCGGTCGTCCTGCG 69323 28 92.9 0 ..........T...............T. | CG,T [69297,69300] ========== ====== ====== ====== ============================ ================================== ================== 13 28 99.2 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : GGCAACGGGACAGAGGATCTCGGTTGAGATCGATGACCCGAGCAGGGACACTCACGCGATGAGCCCCAGCACATCGTCGGAGCCGATCGAGCGAGGGTGGGACGAGCCCTGGTATCGGGTCCGCATGGAGAACTTCCAGGCATCGTTCCTGCCCAGCGCCAGCGAGGACTTGGACGAGGTCTGCAACGTCGATGTCTTGGTGACTCTGACGGACGGATCCTGTTGGACCGCGACCATGTTCACTGTCGCGGAAGTCGAGCGCCTGATGAAGCTTTGGGCAGGGACCGACGAGGCCCTCGGGGGCCGGTATTTCTGGGTCTCGGACGGCCTGATCGTCAGGGATCCCGGCATCGGCAGCATGACCGGCGTGATCGCCGGACTGATCGAGAACGGCGAGTTCTCTGGGATCTTTCAACGGGTGATCAACGACTGACCAAAGTGCTCGGCCGCCGGAAGCGTCGTGGATGGCCAGGCCACGTCGTTCTCGCGCTCGATGGCCG # Right flank : TTCGCAAACGGGTCCTGCTCGCCCCGTAGTCGTGTTGTCAGTGCTTGATGCGAGGATCCGGGAGACCATACGCAAGGAGATCAGCATGGGCACCTGGGGTACTGGTCCCTTCGACAACGACACAGCCGCGGACTTCGCCAACGCCCTCGACGAAGCCGAGCCCGAGGCTCGCGAAGCCCTGATCCGAGGCGTCCTCGTCCGGACGATCGACGCAACCGGCTATCTCGCGGATGCGGAAGAGGCGGTGGCCGCCGCCGCCTTGATCGCGGCGCAATGCCCGGGAGGCGAACCCGTCGACATGTCCTACGGCCCGGAAACGCCGATGCCCGTGTTCCCTTCCGACCTTGGGGCACTCGCCGACGAAGCCCTCGCCCGCATCGTCAACGACCAGGATGGGCTGGCCTCAAATTGGGTCGACTCGCAGGACTGGAAGCAGTGGCGAGCCATACTGACACGCCTTCGTGCAGTGCTTGCCCCGACACCACCGTCCATTGCTCTCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 72531-70669 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML956122.1 Streptomyces sp. FR-008 Scaffold15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 72530 29 100.0 32 ............................. CGCCGCCGCCGGTTCCGCGACGTCTACGCCCG 72469 29 96.6 32 ............................C ATCTTGGACAGGTCCATGCCCTCGGTCTCGCC 72408 29 96.6 32 ............................C TGCCTGACAGGCGCTCAGGGGGGCGTCTAGGG 72347 29 96.6 32 ............................C TCGTTCACGCTGTCTCCCCTGGTCTGCGAAGC 72286 29 100.0 32 ............................. TGCCGGGTGGCGACGCCGGTGTTGCCGACGAT 72225 29 100.0 32 ............................. CAGACACCGGCTTCGAGGTTGTCTCGGACGGC 72164 29 100.0 32 ............................. GTGTCGGGCAGCCGCAGCGTGATGCGGGCGTA 72103 29 100.0 32 ............................. CAGCGGGCCCGTGATCGGACTCATGGCCTGGC 72042 29 96.6 32 ............................C GTCTCCCCGACGATCGGACCTACCGACCGTGC 71981 29 100.0 32 ............................. GGCGTGAGGCTCCCGAGCTTCCCCTTTTTGAG 71920 29 96.6 33 ............................A GTGACATGACGGATTGAGTGGGAGTGGATGGCA 71858 29 96.6 32 ............................C TGGTCGGTCATGACTGCGCCCCGCCATCGCCG 71797 29 100.0 32 ............................. ACGCTCTACCCCTACAAGCTGCGGATCAGCCT 71736 29 100.0 32 ............................. TGGGACTACCGCTACTGGCAGCCCATCCTCAT 71675 29 96.6 32 ............................C CATCACGGCCGGTGCCATCCTCTTCTCCGTCC 71614 29 100.0 32 ............................. TCGCCTTCGGTGCAGGCCGCCAGGCGCCACAC 71553 29 100.0 32 ............................. TCACACCAGCCCCGGCACCCCCGCCACGCGCG 71492 29 100.0 32 ............................. TGCTCGCGGCGCATGCCGCCCCGGGAGTACGG 71431 29 93.1 32 .............C..............C CCTGACCCCGAACACCACCGAAGCACCGGACA 71370 29 96.6 32 .............C............... GCCGGCCGGGACGTGGCCTACAACAAGCCGGT 71309 29 96.6 32 ............................C CAGACGGTCTCGCCGCGCAGCGCGTTCAGGGC 71248 29 93.1 32 .............C..............C GTGGCTACGAGTGGTCTCGTAGACCTGGACAA 71187 29 93.1 32 .............C..............C TGCACATCCGGGCCGACTCGGTGGGCCGCGTC 71126 29 93.1 33 .............C..............C CTTGTGCGGTACCGGTAGGTAGACCAACACGGG G [71109] 71063 29 93.1 32 .............C..............C GAGCCGGGCGCGGTCTACCGGATCTCCTGCCA 71002 29 100.0 32 ............................. GTCTACCGGCACTACGCCCCGGCGACCTGGAC 70941 29 100.0 32 ............................. TGCTCGCGGCGCATGCCGCCCCAAGAGGACGG 70880 29 100.0 32 ............................. ACCGAGTGGCGCCGCATCCTGGCCACAAGGAC 70819 29 93.1 32 .............C..............C CTTCAGGTGCTCTGCCATTTCCACCATGCTCA 70758 29 100.0 32 ............................. CCGTACCGGGCACCGGTCGGGTCGTAGTGACG 70697 29 82.8 0 ..........T..C......A...T...C | ========== ====== ====== ====== ============================= ================================= ================== 31 29 97.1 32 GTCGGCCCCGCACGCGCGGGGATGCTCCG # Left flank : ACCGACAACGACGAGCGGGGGCAGCAGGGGCGCGCGTGGTACGACGCTGGCGCCCGGGCCCAGGCCGCCGTCACGGAGTGGGCGCGTGAGGCCGCGCCGGCAGTCGGCCCCGCACCCGTGGGGATGTTCCTGACCCCCTCATGAGTCTCGTCTTTGATGGGCTGTCGGCCACGCACCCGCGGGGGTGCTCTGGGCGGCACCATCTTCATCCGCCTCGACGCCATGTCGGCCCCGCACCCATGGAAATCTCGCTCGCCACGGTCATCGCCCTGGCACTCTGCGGCCGGCCGGCCCACCGGGTGCTGGGCGCACGGCAGTGGCCCACCGAGGCACATGCGTGGGTGTGGACCGAGAATGGCGTATTCGGGCTGTTCGGCCGCGACCGCGTGGACCTCCGCCGCCCCCTGGGCCGGCGCCCTCGTCGCACCTCCCGTGCCGAAAGGGTGACGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CAGTAGTCGTTCTCGGTGAACTCCCAGTCGGTGTCGGCCCCGCATGTGGGCGTACGGACTTTTCTCCCCGGTGGCGTACGGACGAACGTCCCCAGTTCTGGCCGCGGGCAGCGGCAACGGGACAGAGGATCTCGGTTGAGATCGATGACCCGAGCAGGGACACTCACGCGATGAGCCCCAGCACATCGTCGGAGCCGATCGAGCGAGGGTGGGACGAGCCCTGGTATCGGGTCCGCATGGAGAACTTCCAGGCATCGTTCCTGCCCAGCGCCAGCGAGGACTTGGACGAGGTCTGCAACGTCGATGTCTTGGTGACTCTGACGGACGGATCCTGTTGGACCGCGACCATGTTCACTGTCGCGGAAGTCGAGCGCCTGATGAAGCTTTGGGCAGGGACCGACGAGGCCCTCGGGGGCCGGTATTTCTGGGTCTCGGACGGCCTGATCGTCAGGGATCCCGGCATCGGCAGCATGACCGGCGTGATCGCCGGACTGATCGAG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 78387-76584 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML956122.1 Streptomyces sp. FR-008 Scaffold15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================== ================== 78386 28 100.0 33 ............................ CTGACGGCGCGTCAGGCAACGCCCCCGGGCGAG 78325 28 100.0 33 ............................ CGGCTTCTCGCAGTCAATGCAGTCATGCAGAAC 78264 28 100.0 33 ............................ CCGCGACACCCTCGGCGGTGCCGCGTGAGCACG 78203 28 100.0 33 ............................ AACATCGCGCACCGCGTGATCATCGGCGCCGAC 78142 28 100.0 33 ............................ GTAAGGAGCCCCACCCATGACCGCGATCAAGGT 78081 28 100.0 33 ............................ GCGCGCCAGCCAGCGGCCGGACCGGTTGGCGAC 78020 28 100.0 33 ............................ GCTCCCCGTCCCGCCCAACTTGCTCCTCGGCGG 77959 28 100.0 33 ............................ CGCGGTCCGCGCACCGAGCAGGGCCCGGATCGA 77898 28 100.0 33 ............................ GAACCCGGCACGCGAGATCATCAGCGCCTACGC 77837 28 100.0 33 ............................ GGTCGAGGAGGCGGGGCCGCCCGGGTCGTCGGC 77776 28 100.0 33 ............................ CAGGTCCAGGGTCGCGGGCCACGCCCACTGGCG 77715 28 100.0 43 ............................ AGGGCGCGGTCGAGTCGGTCGACGGCCGACCGGTGCAGGGTCC 77644 28 100.0 33 ............................ GCAGCAGGGCGCCACCAGTCCTCGCCGCCGCCG 77583 28 100.0 33 ............................ CGCGGTCACCTCCGCCGTGGGCCTGGGCCGCAT 77522 28 100.0 33 ............................ CGGCTCCGGCGGCCGCACCTGGCAGGACGTCAT 77461 28 96.4 33 ....................T....... GCGCCGGCGTTCAGCGCGATCAGCCCGGCGGAC 77400 28 100.0 33 ............................ CTGTGCTCGGCGGCTGGGGCCCATGCCACCGAG 77339 28 100.0 33 ............................ GACCTCGTACGCCTGCCATAGCGGTGATCATAT 77278 28 100.0 33 ............................ CTCACCCGCTCCCGCCGCCGAGTCGCCCCGCCC 77217 28 100.0 33 ............................ CCGGAATCCCCAGGTCGGGAAGCGTCATCGCGC 77156 28 100.0 33 ............................ GGGGCGCGTCTCCCACGACCACGAGGAACGGCC 77095 28 100.0 90 ............................ GCGGACCGAGCGTCGCGTCAACGCCGCCCAGTAGTCGGCCCCGCACGGGGATGCTCCGTAGACGCCGCCCTGGATTATGGCGAAGAGCAT 76977 28 96.4 33 .............G.............. CCCGTGTGGTCCGCCGAACTCGCCGGCGCTGAC 76916 28 96.4 33 .............G.............. GAACATCGCGGTAGTCGTGATCGCGATCCGGAA 76855 28 100.0 33 ............................ TGCCGTCGTCGTGGCGTCGCCGCGGTCGGACCC 76794 28 92.9 33 ...........G.T.............. GAGGCTGGTGTTCCGGCGGCCGGTCCAGGAGTC 76733 28 92.9 33 ............TG.............. GAGCTGATGGACGCCCTTCAAGGGCTGCTCGCC 76672 28 96.4 33 ...........T................ CTTCCAGACGCCGAGCCACTCGTCGCCCCAGGC 76611 28 85.7 0 ....................C.A..G.T | ========== ====== ====== ====== ============================ ========================================================================================== ================== 29 28 98.5 35 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : GCGCCGGCCTCTTCGTCACCCACCGCCTCGCCTCAGCCCGCATCGCCGACCGCGTAGTGGTCCTCCACCACGGCCGCGTCACCGAATCCGGAACATACGACGAGTTGCTACACCAGCCCGGCAGCCGCTTCGCCGAGCTACACCAACTCCAAAGCGGAACCGAACTGGTCCCGTGAACATTGCCCCGCCTGGCGTCGGCCCTCCCACACCTGACCCCATTCCCGGGGGAGCACAAGCCGCCTACCAGCAGCGCCTGGAGCAACGCCCCGTACCCCCAGCAGAACCAACAGCCACCTCAGCGCGACGAGCAGGCACGCACCGTCCGCGGATTGGGAAGGTGTGACACCCTCCGATTCCGTACGGTCCGCGAGCCTCTCTCGGAGGTCGCGTACATCACGATCTCTGAAGACGATCCCCATTCGCTCCCGACCCACGAACGAAGGGTGAAGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : GCAACAGGGCTCTGGGTGGGTACGCAGTCAGACGTGCGGCTGGTCATCTGTCGCCCCGCTGCCCACCGCGTCGGTAGCCTTAACTGATCGTTTCAAAGTGAGTTTGGCTGCGGGTCTTGTGCTCGGCGATCTTGGTCGGCAGTGTGTCCGGAATGCGTGCTGATCTTGTTCCTGACGACCTGTGGGAGCGGGTTGCTCCGCTGCTGCCACCTGCTCCTGAACGGCGCCACCGTTACCCCGGACGGTTGCGTGTTCCCGATCGGGCGGCACTCGCCGGCGTCATGTACGTGCTGCGGACCGGTGTCGCCTGGCGCGACGTCCCCGCGGAGGCCGTGGGCTGCTCGGGGGTGACGGCCTGGCGCCGGCTGCGGGACTGGACCGAGGCCGGTGTCTGGCCCCGCCTGCACGCCATCCTGCTGAGTGAGCTGCGCCGCGCCGGCCTGCTGGACCTGGACGGCTGCGCCGTGGACGGGTCCCATGTCCGGGCCCTCAAAGGGGGG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 85837-82718 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML956122.1 Streptomyces sp. FR-008 Scaffold15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================ ================== 85836 28 100.0 33 ............................ CGCCCTCTACCGGCTGGTCGACTCCGCCGCCGG 85775 28 100.0 33 ............................ CCCGGGGTCGGTTGCGCGCGCTGTGACGGCCCT 85714 28 96.4 50 ...........C................ CCACGAATGAAAATGAGGCACTCTCGCGGTACCCTCCCAGGTCAGCAAGT 85636 28 96.4 50 ...........C................ CCACGAATGAAAATGAGGCACTCTCGCGGTACCCTCCCAGGTCAGCAAGT 85558 28 96.4 50 ...........C................ CCACGAATGAAAATGAGGCACTCTCGCGGTACCCTCCCAGGTCAGCAAGT 85480 28 96.4 33 ...........C................ CCCGGGGTCGGTTGCGCGCGCTGTGACGGCCCT 85419 28 100.0 33 ............................ CCGCGTCGGGTCCGTCGGGGGCCGTGCGCTGGA 85358 28 100.0 33 ............................ CAGCCGCAGCGTGTCGATGCGGACGTAGCCGAA 85297 28 100.0 33 ............................ GGTGGAGACCGCCGGCCCCGTCGGCACCAGCCC 85236 28 100.0 33 ............................ GTTGGCCTGGGTCTCCTGCTGCGCCTGCTCTGC 85175 28 100.0 33 ............................ GTGGCCGGCCTCGATGACCCGGCCGCCGAGGGA 85114 28 100.0 33 ............................ TCCCGGACCGGCGCCACCGAGAACCTCAACGAA 85053 28 100.0 33 ............................ GAACCCGGACGGCATGCGCTGGGCGCCCTACGG 84992 28 100.0 33 ............................ CGTCCTTGAGCCACGCCCGGCGGGCCTCGTAGT 84931 28 100.0 33 ............................ CGCGGTGATCCACGCATCGTGCTGGACGCCGAC 84870 28 100.0 33 ............................ CTGCGGTTCGTGCAGGTCACTGCTCCGGGCGGT 84809 28 100.0 33 ............................ CACCTGCGTGATGACCTGTGCGATCTGCACGAT 84748 28 100.0 33 ............................ GCAGCCGGCCTTGGCGTTCGGGCGAGAGCTCAG 84687 28 100.0 33 ............................ CCCGGAGGGGGTGTCGGCCCAGAGCCCGTACAT 84626 28 100.0 33 ............................ CCCCACCGACCCCCAGCCGGCCGAAATCCCCCG 84565 28 100.0 33 ............................ GCTGCCCACCAGTCACGACGGCGCCGTTGACCT 84504 28 100.0 33 ............................ GTGGCGGCAGATGGAGCGGAAGGACGTGTTGCT 84443 28 100.0 33 ............................ CGCGCCGACGAACGCCAGGTCGACCACCAGCGG 84382 28 100.0 33 ............................ CGCGACGGTGGTGACCATGACCGGCACGGCGGC 84321 28 100.0 33 ............................ GCTTCCGCAGGGCGGCGGTGAGATTGTCGATGG 84260 28 96.4 33 ..........................T. GCTGGCCTCCATGGTCGACCTCACCGCCCGCGA 84199 28 100.0 33 ............................ GATCCTGAAGGGGGATCAGGGCCGCTCGAACCG 84138 28 100.0 33 ............................ GGGATGATCCGCAGAGGTGTTCTCCAGAGCCGG 84077 28 100.0 33 ............................ CACCCCGCAGTCGTCGGCGAGGTAGTCGAGGGC 84016 28 96.4 33 ...................T........ CCCTGACCGCGAGAGCCGAGTGTTTGGCGTTTG 83955 28 100.0 33 ............................ GGTCCCCGCGCCTGGCGGGCGCATTGAGCTGCA 83894 28 100.0 33 ............................ CTTCAGCGCGCCGCCGGTGAGCGCGGCGGTGAG 83833 28 100.0 33 ............................ GAGACCGCGACGCTTCCGGGTCTCGCGCTCCTC 83772 28 96.4 33 .............G.............. CATCACCAAGTCTGCCCGATTCGGGGCGATGGT 83711 28 96.4 33 .............G.............. GGCTTGCCGAGCACGCCGACCTGCACGGACCGG 83650 28 96.4 33 .............G.............. GCTCCTCACCCGGCTGCCCGAGCTGCGCGGCAT 83589 28 96.4 33 .............G.............. CCGCGACGGCCTGTTCCTCGACTGCCACGAGGC 83528 28 96.4 33 .............G.............. GTCCGCCCGCTGACGGCTGTCCCCGCCGGTCGC 83467 28 96.4 33 .............G.............. CCAGCTCTGACCCGCTTTTCAGCAGGGAGGGGC 83406 28 96.4 33 .............G.............. CTGTACGGCCTCAGTCGATTCGTGCATCGTGTC 83345 28 96.4 33 .............G.............. GGAGCTGGGGCTGTCCTGGCTGACCGTCGACAG 83284 28 96.4 33 .............G.............. CCACGTCGCGCAGATCGCCCCGGCCGGATCGTG 83223 28 96.4 33 .............G.............. GCTCATGGGCCTCGACATGCCCGTCCGCGCCGA 83162 28 96.4 32 .............G.............. CGACCACGCTGGGCAGGCCACCATCAACGACA 83102 28 96.4 33 .............G.............. GGGCTCGTCGTTCACGTTCCGCGTGCTCGATGG 83041 28 92.9 33 .C............A............. GTACCTGAAACCGCAGCGCCTCTTCTTCGTCGG 82980 28 92.9 204 ...........G...............T CTGTCCGAGCGGGACGCCGCGCTCAGCGTGAAGTCGGCCCCGCACCTGCGGAGGCACCCCGCTACCTGCGGCGAGGCTCGCGGGCCACGACGTGTCCTCTCCGCGCGAGCGGAGGTACCCCGTTGATGCCGTGCCCGAGGACGACGACGCCCTCTCCAACGTGAGCGGAGGAAGCCCGCATCAGGACCTCGGCCAGGGAAAAGA 82748 28 78.6 0 CGA........G..T...........T. | TT,T [82736,82739] ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================ ================== 48 28 97.9 38 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : ATGCAGGCGTTGCCTTACCAAGATCGTGAACAGCGCATAGCCACGCAAACAACCTGCGGCCCCGACCCGGACCACCGGCCACCTCATCCAGCAGGCCCCGCGTCGAAGGCGCAAGGAAGCTCTCCCACAGCCGCTCACCCACAGCCCCGGTATCAAGCAGGTGCGACAGAAGAAGATTCGTCTGCCCACCGGCACGCTCCGCCGACTTCCCCCACAAGACCCCTAACGGGCCCTCCACCGACTCCAGCGGCACCCTTGCATCCGGCACGCCGGACCACCCTTCGCTCAGCACTCACGACTGCCCGGCACAGTAGAGGACACCACTGACAATTGACGGCGGACGGCCCAAAGACGAACATCCCCCACGGCGGGCGCCCGCACCACGCGGTCACACACCGCGCTCCCTGAACTCCACCACTCGCTGCCCGGCCCACGAACTAAGGGCGACGCACATGAATGAAAATGAGGCACTCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : AATCTCACTGGGGAGCGGCGCGGTCAGCGTGCGGCTGTTCCCGCGCTCGCGGGGGGATGGCCCTTGGCGGTCATTTCGGCGAACGGCACGTTGGCTCCGTACTGAGCTGAGCACCCGCCGGGCAGAGTTATTCCATCCGACCAAGGGAGAGACTGCAGTGTCGTCCGTTCCCCGCTCAGAACGATACGAGAACATCCCGACCGCCTTGGTGTATGACATCTTCGCGGAGTTGGCCACCCAGCTCACCGGTCGCTACATCCGTCTGTCCGATACCGCACCGTCTGCCGCGGAGCGGGACCAGTGGTGGCAGAAGGTGCTGGAGCTGCGCCAGTACAAGTGCGCAGTGCCCGCGCGCGACCGGGCAGCGTTGATAGCCCACATCAGCCAGTGGGAAGCGGAACTTTCCCGCCTTCGGGGCGCTCACTGTGTCTGAGGGCCGGGACTACTACCTCGCTGAGGAGGATCAGTGGGGTCGGGAGCGCGACGCCACCACAGCCAGC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.91, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : GTCGGCCCCGCACGCGCGGGGATGCTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 101799-101947 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML956116.1 Streptomyces sp. FR-008 Scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 101799 24 100.0 37 ........................ TCTTTGACCGGCAGGTCACATCGGACGGCGCACAACC 101860 24 100.0 40 ........................ TCCTTGACGGCGAGGTCGGCACAGACCAGCACCCCTCGAT 101924 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================== ================== 3 24 100.0 39 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : GGTGAGCCTGGTGACGACCTTCGCCACCTTCTTCCTCGGGCAGGCCCTGCTCGGGAACCTCTCCGCCTCCATCGGCGACCCCGGCGTGCTGCGGGCCGTCATCGGCGCCGCCCTCTACATGACCCTCATGGCCGTCTTCTCCATGGGCGTCGCCGCGATGCTCCGCTCCCCCATGCTCTCCCTCGGCATCCTCGTCCCCTTCTTCTTCCTCGTCTCCTCCATCCTCGGCGCCGTCTCCGCCACCGAGAAGATCGGCCGCTTCCTCCCCGACCAGGCCGGCTCGAAGATCATGCAGGTGGTGGCGCCGCTGAACGACGACACCCCCTACGGCCCCTGGGGCGGCCTCGGCATCATGGCCCTCTGGGTGATCGCCTCCCTGGCCATCGGGTACGCCCTACTCCGCCACCGCGACGCCTAGCCAGACGGAACCAGGCCATCGACCGGGCGGCCTCAAACGCCGGCCAGGCTTGAGTGGCCTCAAACGCCGGCCAGGCTACCGA # Right flank : AACCCCCCAGCCCACCCCGGGAGGGAACTTCCGCTTGGCCGGAACCGAACGCCGGTGACTATCCTCCTTACGTTGACGGGGACAACCCCGGCAAGGAACTCTGTCGACGGGTGCGGGGAGCACATGATCGAGGCCACCGGCCTGACGAAGCGCTACGGCGCGAAGACCGCCGTGCACGACCTCTCCTTCCAGGTGAGGCCCGGCACGGTGACGGGCTTCCTGGGCCCGAACGGCTCGGGCAAGTCCACGACGATGCGCATGATCGTCGGCCTGGACGAGCCCACCAGCGGCCATGTCACGATCGGCGGCCTCCCCTACCGCCGCGTCCCGAACGCCCCGCGCCAGGTCGGCGCCCTGCTCGACGCCAAGGCGGTGCACGGCGGCCGCTCGGCCCGCAACCACCTGCTCTGCCTCGCGCAGCTCTCCGGCATCCCGGCCCGCCGGGTGGACGAGGTGCTGGGCGTGGTGGGGCTCCAGGACGTGGCGCGCCACCGCTCGAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //