Array 1 286366-287293 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYDI01000002.1 Pseudomonas sp. Irchel 3A18 isolate Pseudomonas sp. Irchel 3A18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 286366 28 100.0 32 ............................ GAAGCCGGGTCGCACCGCCAACCCCTGTAAAG 286426 28 100.0 32 ............................ AGCCCGACAGCAGCTCCCGTCGCGAGAAGACC 286486 28 100.0 32 ............................ ACGCTAATGGCGTTCTCGGAGTCGCGCTGGTT 286546 28 100.0 32 ............................ TACAACCCCTCGCAGATCCTGAACGCGGGCGA 286606 28 100.0 32 ............................ AAACTGCGTGGTCGCCCTGAACATGGCCATGC 286666 28 100.0 32 ............................ AGTGGCGGGTGGGAGCTGGAATTTGTCGAAAG 286726 28 100.0 32 ............................ AAGCGTAGTCATCACCTGGGTATGGCGTTAGC 286786 28 100.0 32 ............................ TAATTACGGCGTCCGGCTCGTATATCCACATG 286846 28 100.0 32 ............................ CGCTCGTTCGACACGTCTGCCAGCTGTTGGCG 286906 28 100.0 32 ............................ TGGATGGCTTTCAATGTCAGCAGACACTTGCA 286966 28 100.0 32 ............................ TTCAACACCGACGGCAGCGCCCGCATAGGCTC 287026 28 100.0 32 ............................ GGATAGCTGCCTGTTGCGCCGTACGCATCGTA 287086 28 100.0 32 ............................ AGCGCTCGCCGCCATGCAAGGCAATGCTCTGG 287146 28 100.0 32 ............................ AAGAGCAGGCATCAGCTATGCAGCTCTGCGTC 287206 28 96.4 32 .............C.............. AGGTCAACGACTTGGTCATCAGAGACCTGGTG 287266 28 75.0 0 ............A.......TC..ACTC | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.2 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGGGATGCAGGCTCTTTTTTGAGTCTCCCTCGGGCACCACATAGCAAGACACTCAAGCGGTTGCAGAGCTTGGGGTGAAAGAAACCGGCCAGTTGAGCCGGTTTTTTTGTGTCTGGGTTTTGGTGATTGCCGGCCTGTAGGAGCGAGCTTGCCCGCGACGACTGTCGCCCTGCCAATGAAAATGCATTGCCTGCACGAACGTCGCGGGCAAGCGCACTCCTCCTTCAGTCGCAGCTACCCGAGTAGAAGCGAATTCATTCGCGAAGACGGCATTCCAGACAATACATGTCCTTTGAATGTACCGGCCTACCGCGAATGAATTCGCATACAGCTCCGGCACCAAACCACGACTTCAAACACCCTCTTTTTGACCCTCTTTTTTTCAGACTCCGTCGCCCCTTTAAAATCAACAAGTTACGGAACCCTCAAAAAAGAGGGTAAAACGGCCCCAAGCAGGTGGTTTATCTTTAAAAACGGAGAGTTATAAGGCAAGGTGTCTA # Right flank : CCACTTCATAACCGTCAAATCCTACGTCCCCACGCACTCCCGCCCTACAACCACCGACTCCCCATTACCTCCCCCAAACTGAATCCCCTCATTTAACCAACCCGGCCCCCAAGCTACGCTTCCTGCCGTTCGCTGCCAGTTCAGCGACCGGGTTTGGCGACCCGATCTAAAGATAAATTCCCCCATCGCGAAGCAGTCGATTTATTCTTCTGTCCCTGCGTTATGGCGGTTGTGTGCGGGAGGCCTTCGGGTCTGCCGGGTTTATCTTTTTACCGGTTCGCCAACCCTCACACAGCTGCCTCCATTTGTTTGGCGACAATCCGTGGCAGCTCTTTTTCAGCGACCATAAAAAGTGTGCCTCTATGCAAAAGCTTCTATCCGATTCCCCATGTACATCCTCCTTCCAAGCCACCCTCTTCCTGCGCCACAGCCGCATGCTCCGCGCCATATTCACTGAATCCCAAGCCTGGTTCTGTCTCTCAGACCTTGCCCGCCTGATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 307605-306856 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYDI01000002.1 Pseudomonas sp. Irchel 3A18 isolate Pseudomonas sp. Irchel 3A18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 307604 28 100.0 32 ............................ ACCCCTTGCTCCTCCGCCAACGCCTGAATCAG 307544 28 100.0 32 ............................ TATCAGCGTGACAGCATCCTTCGCGCTCACCC 307484 28 100.0 32 ............................ GAAGATGCTCGGCTACTGCTGAGTCTCGCGGA 307424 28 100.0 32 ............................ TGCCAGAAATGCGGAAAGATCACTGAGCAGCT 307364 28 100.0 32 ............................ AATTTGGCGAGAGTTGTTAAACAGGGCGGCCA 307304 28 96.4 32 ..........A................. ATGCTGAAACGCGAAACTTCTGATCCGCCTAT 307244 28 100.0 32 ............................ GGCTACCCACCTTTCCCAATGATCCCCATGGG 307184 28 100.0 32 ............................ ACGAAATGGCTGATATCGAATATGTGGCGCTA 307124 28 100.0 32 ............................ TTCGTGATTTCACAGTTGACCTGGATGCCGGC 307064 28 100.0 32 ............................ GATGAAAAGAAAGACCTGCCGAAGTGGATGAC 307004 28 100.0 32 ............................ ATGTTCGACCTCCAGGGATTTTCTGAATGAGT 306944 28 92.9 32 ............A.....C......... AGGAACAGGATCGACAGCACGTATTGCGGCTC 306884 28 89.3 0 ...........CA..A............ | G [306858] ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.4 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : GTCAGAATCAGCATTCCGGAAAATGTTTTTGTGCGTCTATTGCTCGCTGTAGATACGGGCACGTATCGGTAGATATTGTCCCTTGCATTGTCGCGGGCAAGCCCCCTCCCACTGGTGGTACATCCGAGTCGGTTGAGCACCGTCTTCGCTACTGAAGTCGCTACGGAGTAATGCCGATCAGTTAAGGTATACACAAAACTTGTGGGAGGCAGCTTGCTGGCGAAAAATCTGAAAAGCGGCAGATATTCTGCGGTTGTACATTGAAGTCGCCAGCAAGCTGCCCTGCACAAAGTGATTTATCAAAAGATACGGCGCTGTCGCACTCCCCGGGAATATCTGTCTACGGTGGCCAAGAATGAACCCTTTCTTGACCCTCTTTTTTTCACCATTGGTTCGTCCTTTAAAAATCAATGACTTATAAAACTCGATAAAAAAAGGGTAAAACGGCTGCTGGTGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGGAGAGTGTCTA # Right flank : GCTTCACCGCCATAGTCGCGGGCAAGCCCCCTCCCACGGTAGTACATCCAATAGATATCCATCGCCTGAAGCACCGTCTTCGCGACTGAAGTCGCTCCCACACAAGCCAATTCATTCACGAAAGGCCTCGAAGGCATCCTGCACAAACCTTCTAGACTTCCCATCCCCCATGCGCGATAACACGCTTCTCTATCCCCTTGTTTGCCCATAAGCCTGCCATGACTCAGAGCAACTGGATCAATCTTGCTCAGGACCGCGATACCGGTATCGAGACGCTGCATGCGCATTTCGAGGGGAATGCTCATGCCTATGATCCTCACTGGCATGACAGTTATCTGGTGGGTGTGACGGAGCAGGGGGTTCAGCAGTTTCATTGTCGGCAGCAACGTTATGCCAGCACGCCGGGTCAGGTGTTCATGCTGGAGCCGGGTGAGATTCATGATGGGGATGCGCCCAGCGCCGAGGGTTTCACGTATCGGACGCTGTACCTCGACCCGCAC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 308234-308861 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYDI01000002.1 Pseudomonas sp. Irchel 3A18 isolate Pseudomonas sp. Irchel 3A18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 308234 28 100.0 32 ............................ AACCCGTGCCCCAAGCAGAAGACCCGACGATT 308294 28 100.0 32 ............................ AGTGCGTGGACTGCAGCGTGCAATTCGTTGAA 308354 28 100.0 32 ............................ ACCGGGTTCGCCCGTATCCGATGGCATCAATC 308414 28 100.0 32 ............................ TGGTGCGCAGGATCTGCACCACTCACCAGGGC 308474 28 100.0 32 ............................ ACCGGCAACGCCATCACCGAGGACGCCGAAAT 308534 28 100.0 32 ............................ CAGGGCGGCCTGCTGTGCCTGAGCGCGATCTT 308594 28 100.0 32 ............................ AATTGAAAATCCCGCTGTTGCGCATGGGCATC 308654 28 100.0 32 ............................ AATTCCGGTGGGCTGAAATGAAAAACCCCGCC 308714 28 100.0 32 ............................ ATATCGCCATCTTCCCAGTAATAGAAATCCAC 308774 28 85.7 32 ...........CA..A......C..... TACGACCCGGTCATTAATGGTCATCTGCTCTC 308834 28 71.4 0 A..A.......AAC........C.C.C. | ========== ====== ====== ====== ============================ ================================ ================== 11 28 96.1 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : TCAAGAAAGGGTTCATTCTTGGCCACCGTAGACAGATATTCCCGGGGAGTGCGACAGCGCCGTATCTTTTGATAAATCACTTTGTGCAGGGCAGCTTGCTGGCGACTTCAATGTACAACCGCAGAATATCTGCCGCTTTTCAGATTTTTCGCCAGCAAGCTGCCTCCCACAAGTTTTGTGTATACCTTAACTGATCGGCATTACTCCGTAGCGACTTCAGTAGCGAAGACGGTGCTCAACCGACTCGGATGTACCACCAGTGGGAGGGGGCTTGCCCGCGACAATGCAAGGGACAATATCTACCGATACGTGCCCGTATCTACAGCGAGCAATAGACGCACAAAAACATTTTCCGGAATGCTGATTCTGACCCTCTTTTTTTCACCAAATATGCGCCCCTTTAAAATCAATCACTTACATATCTGATGAAAAAAAGGGGTAAAACGGCTGCTGGCGCATATTTTTCTTTGAGAACGGAAGGTTATCGAGGAGAGTGTCTA # Right flank : ACCCCAATAACCCCATAACCAACTGATCTACATAAATTTAAATCCAAACCTGCAGAAGCACGCCTGCCCACAACAACCCTTCTGTAATCCACTCCCTACAAGAACCGCAGACTCATCTTTCTGACTCACGACCACTCCCAACCTCAAAAAACATAAAGCACCGCCTTACGCTTTCGGCTATATACATTCCCTCTCCCCGGCCAAGTGCCATTACTGGTTCGATCATGGATGACATCAGTTCTTCGGATCTCAAGACGATCCTGCATTCAAAACGCGCGAATATTTATTATCTGCAGCATTGCCGGGTATTGGTGAATGGCGGTCGGGTCGAGTATGTGACCGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACCGTGCTGCTGGGCACGGGGACTTCGGTCACTCAGGCGGCGATGCGTGAGTTGGCCAAGGCGGGTGTGCTGGTGGGCTTTTGCGGCGGTGGCGGTACGCCGTTGTTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 318696-317525 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYDI01000002.1 Pseudomonas sp. Irchel 3A18 isolate Pseudomonas sp. Irchel 3A18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 318695 28 100.0 32 ............................ TTGGTCAGCGCCGTGGAACAGTACTCAATTGA 318635 28 100.0 32 ............................ AAGAGGAATGAACCTCTTGTAATTTGTATCAC 318575 28 100.0 33 ............................ ATATGGAAAACGCATGCAGCACCTTTGAACAGT 318514 28 100.0 32 ............................ TGAAAGAAATAGTTTGCCTCGGGGGATAGTTC 318454 28 100.0 32 ............................ AATCACCATCAGCAACTGCGGCTATCAACCTC 318394 28 100.0 33 ............................ AAGCGCCCAGCTAAGCACGATGCATCGGTTAGC 318333 28 100.0 32 ............................ GGTCAGGTTGATCCTGAGCATCTTCGACGTCT 318273 28 100.0 32 ............................ TTCAACGCGAACCCATTCGGAGCCATTCAAAA 318213 28 100.0 33 ............................ GACTGGGAGAAAGCAGAGGACGCCCGCGTAGAT 318152 28 100.0 32 ............................ GACCTGAGCTCCGCCAACCTGAGCTACGCCAA 318092 28 100.0 32 ............................ GGAACAAAGCGTTCGCTTGGCTCGGCCTCAAG 318032 28 100.0 32 ............................ TACGCGTGCTGCGTCGGATTCTTCTTTGATGT 317972 28 100.0 32 ............................ CGGTTTATCTGGTAGTCGGCGATGGCACCGGC 317912 28 100.0 32 ............................ AAACTCATCGACATACCCGGTATCTACTGTTC 317852 28 100.0 32 ............................ ATATGGCGAATCGGCCAACTACTGCTATTCCG 317792 28 100.0 32 ............................ TCGGGCCGCTGGCCGCGCCGGTCGTAGAGCCG 317732 28 100.0 32 ............................ CTTGCGAGGACAGGTTTTTGCGCTCCTGATGC 317672 28 96.4 31 ............G............... CTACGGGCGTTAAGACCCGGATAAATCGCAC 317613 28 89.3 31 ...........C.C.......C...... GATCACTTGAGCATTGAGCAAAGCACTGAGC C [317587] 317553 28 89.3 0 ........T......A........A... | A [317540] ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.8 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : AAGGTGGCCAGAGCATCAACCGCTTAAATGATGGGTTTCAGGGTAGTAGAGAGTGGGGGTGTTTGCTGCTGAGAGAACCGGCTGATTGGGTGGGATTTATCCGCGAGACGTCATTTCAGACGATGCATTTTTGAGAGCTGAGTGATTCACCCCAGGTTCACACAACCTTGTGGGAGGGGCCTTGGCCGCGACATCCTTCAGACAAAATATGTCAGGAAATGGAGCTTTTCCAAGCCGTCATGTCGCAATTTCCGGTTTCTAGCGACATGTTATGAGGTCATGTCGCTGGCGACGACATATCAAAAAGTACGGCGCTGTCTTGCTGCGGGTGAGCACCTGTATACGGCGGACAGGAATGAACCCTTTCTTGACCCTCTTTTTTCGCCTCAGATTCGTCCTTTAAAAATCAATGACTTACAAAGCTCGATAAAAAAAGGGTTAAAACGGCTGTTGGCGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGCAGAGTGTCTA # Right flank : AACAAAGCCCTTGTAGCTAGCTCACCTACAAGGGCTTCAATCCATTGCCAAAAGAACATCAAAACCAGGGAACAGTAGCCGTAGCACTCAACCCATAGCTATTGAAGGTCCCATCCTGGGCGCTGCTCTGTATCGGCTCATGCCGGATGAACAGCAGGAACGTCTGACCATTGGTACGGCTGCGCATCTGGACGAAGGGCAGGTTGCAGCGTTTTGCGGCGCTGTCGGGGATACGTTCGCGGGCTTGTTCTTCCGTGAGGCCGTGGCGTTTGATCAGGCGTCGTCTTGTGCGCTCCGGGTTGCTGTCCACCTGCACGCGGCTGATGCGGCGATGCTGCGCGTCAGTGGGCACCTGGCTCAGTTCGCCTACTCTCACATGGTCGCGCATGCCCGTCAGCCAGCTCTTGGCCATCAGGGCATCCAGCGCTTGCGCACTGCCATGCAAGCGCAGGAGGTTGCCCAGGCCGGTAGCCCTGCCGCTGATAGCGGGGAAACTGATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //