Array 1 875421-869867 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033188.1 Xanthomonas oryzae pv. oryzae strain PXO513 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 875420 31 100.0 35 ............................... TGAAGGTCTGACCCCTGTGGGTTGATCCCTGATCC 875354 31 100.0 34 ............................... TTTCATCCGCTGCTTGTACAGCGCTACAACAGCA 875289 31 100.0 34 ............................... AGCCGCTGCCTGAGTGGCAGGGCTCTGTGCCAGG 875224 31 100.0 35 ............................... TTCAACAATTTTGTGAACTCGTTCAGCAAGTACCT 875158 31 100.0 37 ............................... AGTGGCAGAGTATATGCAGACATCCCGCCAGATTCGG 875090 31 100.0 37 ............................... CAGGCATCGGTCGGTCGCTGGAATGACAGTGGTGCCC 875022 31 100.0 35 ............................... TCGCGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 874956 31 100.0 34 ............................... ATCTACAAGGTCCGGAAGGAAAAGAAGAGGATTA 874891 31 100.0 35 ............................... TTGGATGGTCAGCCACCAGCTGTCCTGCGGGACCC 874825 31 100.0 34 ............................... ATGATCAGTCTTCGTCTTAAGCCCAAACGGGACA 874760 31 100.0 35 ............................... ATCGTGTGCGCAATGACATGCGTGGTGTCAGTCTT 874694 31 100.0 34 ............................... GCAGATGCTGGACCTGCATGAGCAAGGCAAGCTG 874629 31 100.0 35 ............................... TTCGTCGTTGTGCTGCTAAAGGTCAGCTGCACCCC 874563 31 100.0 35 ............................... TTAACAATGTACCTGTCATCGCCATCACCGTGGAC 874497 31 100.0 36 ............................... CGCAGGAGGCACTGCCATTGCAACGGGGACTGGCTC 874430 31 100.0 35 ............................... CAGTGTACAGCTGAAGCTTTAGGGTCGTGTGCGTC 874364 31 100.0 35 ............................... TAGACAACCATCCCCGCCTCTGGCCTAGCCATGCA 874298 31 100.0 34 ............................... CGCCGGCACATGGGCGATGGTGAGCCATGAGGTG 874233 31 100.0 33 ............................... TCAAAGGGGATGCCACTCAAAGACCAGCAGGCC 874169 31 100.0 34 ............................... CAGTCGCAACAGATGGATTAGCTGCCGTGATGGC 874104 31 100.0 35 ............................... CGCCCCCAGCTACCAGACATGCTGACGCCACTGAG 874038 31 100.0 35 ............................... TGTCGTGAAATTTGAAAAGGTGCCACCTGGGCCAC 873972 31 100.0 34 ............................... TCAAATACAAGCGCACCTGTTGGGCCAAATACTC 873907 31 100.0 35 ............................... TTCTCTACACGCGCCTCGACCTTGTCGTAGTCCTG 873841 31 100.0 35 ............................... GGGGTCGTCAGTGCACCAGCAGAGCCAGCAGCATC 873775 31 100.0 37 ............................... ACTGGCGACTCAAGCACTTGCAGGAGAGCATGCGCCC 873707 31 100.0 34 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATGT 873642 31 100.0 34 ............................... AAGCCAGCCGCCGACAGTGTAAGGGCAGACCCAC 873577 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 873512 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 873447 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 873383 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 873317 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 873252 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 873185 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 873120 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 873052 31 96.8 35 ...................T........... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 872986 31 100.0 35 ............................... AGGCTGTCGGTGACATTGGCCAGGGTGGCTTCCAG 872920 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 872856 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 872791 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 872724 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATAAA 872658 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 872592 31 100.0 37 ............................... TGTCAATGTGATGCTGTAACAGGTCCGCCCTTAGCCG 872524 31 100.0 35 ............................... AACACAGTTAGGCACATATGCCAGTATCTTGACCA 872458 31 100.0 34 ............................... ATGACGGCCAACAAGGTGCGTCGCCCGGACGGCG 872393 31 100.0 34 ............................... CGGTCACGACCACGAGCCCTGGGCGTTTTTCGCA 872328 31 100.0 35 ............................... GATGCGCGCCTCTGGAACGAGGTCCTACCCCGCTG 872262 31 100.0 35 ............................... TCTCACGGCCACTGCCGACTCGTATGTCATGGTCC 872196 31 100.0 34 ............................... CATTGGTGCCTGCCTGTGCCAGTATGTATGCATG 872131 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCCCGGGCACGTGTGGA 872065 31 100.0 35 ............................... AAGCAATGGCGCTCGGCCAGCCTCTACAGATCCGC 871999 31 100.0 34 ............................... GTCGCCGGGTACCAAGCGGCAAACCTCACACCAC 871934 31 100.0 35 ............................... GCCACCCCCGACGGCCATCACACCGTCAAGGGAAA 871868 31 100.0 35 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAG 871802 31 100.0 36 ............................... TTGACAGATGATCAGTATGACAGCTTTGCCAAGAAG 871735 31 100.0 34 ............................... GTGAAATACTCGCTCGCAATCGACTTGATGAGCG 871670 31 100.0 35 ............................... CGCTACGATCCGGCATACGGGACGTAGGGTTGCAC 871604 31 100.0 36 ............................... ATCACGCGGACGAACAAGCCCTCATCGCGCGATCCG 871537 31 100.0 36 ............................... TCCCTCTGTTTGTTAATGTTCTCAACCTCTCTGGAA 871470 31 100.0 33 ............................... CAGCCCCGGCGTCGGCGGCCGCGTCGAACTCCT 871406 31 100.0 34 ............................... CTGGGGGATGTTGAGCATAAGACCAGCAAGGCTG 871341 31 100.0 35 ............................... GGGCATGACTAAACTCCTCGTTGGCGTTACGGAAA 871275 31 100.0 36 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGCCT 871208 31 100.0 35 ............................... CGACCTCTTTGAGAGTGTGTCACTGTACATCTGCA 871142 31 100.0 36 ............................... GTCGTGCAAGGCCCGCTGATCCAAGCCTGGCAGCGC 871075 31 100.0 35 ............................... TTCGGCGTGCCGCCATCAATGATTGGGCACAGCAG 871009 31 100.0 33 ............................... TGGCAAACGGTGGTAACTCGTCTGCTATTAGAC 870945 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 870880 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 870815 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 870750 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 870684 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 870618 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 870553 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 870488 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 870422 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 870356 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 870292 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 870225 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 870160 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 870094 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 870029 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 869962 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 869897 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 85 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //