Array 1 30179-31465 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTQP01000003.1 Pseudomonas aeruginosa strain AZPAE14952 AZPAE14952_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 30179 28 100.0 32 ............................ CACCAGCACCGAGTTGGACGCCGACACCGAGC 30239 28 100.0 32 ............................ CGGAAGAAACGGCACTGCACCGCAGTTCGGCG 30299 28 100.0 32 ............................ AAGACGCGATGACCCGGGCGATGATCCACCGC 30359 28 100.0 32 ............................ AGATTCGCCGCGTCCAGGCCGTCCATTTGCGC 30419 28 100.0 32 ............................ AGACGATCCGCGCATTGACGACGGGCGGGCCG 30479 28 100.0 32 ............................ GTACCGGGGTGCTGCCAACCATACGAGGCGTT 30539 28 100.0 32 ............................ ATGACCTGGGCCCGGACCACCTCCAGCCCCTC 30599 28 100.0 32 ............................ CACATGTGCGCTTCGGCGATGGTGTCGGCCAG 30659 28 100.0 32 ............................ AAGCGGCTGCATAAGGACCCGGACAATCCGGA 30719 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATCAGT 30779 28 100.0 32 ............................ TGATCCATCACCGCCTTGACACCAACAAAGGC 30839 28 100.0 33 ............................ AGGGATCGCCGTCGAACGGCGACTTGCCCGGAA 30900 28 100.0 32 ............................ ACTTGATGAACTTGCCGACGCTGGGCGCGAAG 30960 28 100.0 32 ............................ TCCTAGTTCTTCGCCCAGCCGGAAACCGAGGC 31020 28 100.0 92 ............................ NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATAGGCAGCTAAGAAAACAACATCAATCGCCTGATGCTGGGGCACCTG 31140 28 100.0 32 ............................ AGCTTCGGCACCCTGATGCGCGCCGTCGAGGG 31200 28 100.0 32 ............................ AATGCGGTCCTGCGCATCCGAACTGGTAAGTG 31260 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 31320 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 31379 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 31438 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ============================================================================================ ================== 21 28 98.5 35 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ATGAGCCGGGCGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAACCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 41868-40340 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTQP01000003.1 Pseudomonas aeruginosa strain AZPAE14952 AZPAE14952_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 41867 28 100.0 32 ............................ TGCCTGGATGATGCTCGGCAAGATGATGGAGG 41807 28 100.0 32 ............................ AGAGTGCGATTGCCGCAGCAGGGGAGTATAGC 41747 28 100.0 32 ............................ CAGTGCTGCGTCGTATCCCTGAACAGTGTTCC 41687 28 100.0 32 ............................ AGGAATTCACTCGCGAGCCGATCCACGATTGG 41627 28 100.0 32 ............................ TGTACAGCAGCGATACCGCAACGGCGCTGATG 41567 28 100.0 32 ............................ ATTGGCTAACAGCGGGATACGAGATTCCGCAG 41507 28 100.0 32 ............................ GGCCAGGGCAGATCGGTCTCGCGGCACTCGTA 41447 28 100.0 32 ............................ TGGCGCGACGAAGAACCGTCTGCACTCGCATA 41387 28 100.0 32 ............................ TTTGAGCAGTGGGGCGGTGGTCTGTATCGAGG 41327 28 100.0 32 ............................ ATATCCGGAGCGTAGGCGGGGACGGGCAGGGC 41267 28 100.0 32 ............................ TTCTGGTGGGCGAGGGCGGCGGGCTGAAAAGT 41207 28 100.0 32 ............................ TACCCTATGACCGGAGGCTGTTTCAGGGGGTG 41147 28 100.0 32 ............................ TATGACCACCCGCCCCGTTCGCTCGATCATCG 41087 28 100.0 32 ............................ ATCAGCTCAAGGCGCTGGGTGTTAAACGCCTT 41027 28 100.0 32 ............................ TGCAGCAGACGGTTGCGGTGCGCCCAAGACAC 40967 28 100.0 32 ............................ TTTTTGCGTCGCGGGATAGGGGAGTGTTTCGC 40907 28 100.0 32 ............................ AGTTGCGTCGTCGAAAGAGGCTCAGGCTATTT 40847 28 100.0 32 ............................ TTGGCCAGCAGCAACCCGAACTCATGGCAACT 40787 28 100.0 32 ............................ GTCACCACGACAACGGCAGGCGATGGGCTGAC 40727 28 100.0 32 ............................ TTCGATGAAATCAAGCAGTCGCCTGACTTCGG 40667 28 100.0 32 ............................ AGGTCCGTGCGGCGGCCAGGTTGGATGTCCGG 40607 28 100.0 32 ............................ AACCGCAGAAACACTAATATCAAACCTAACCC 40547 28 100.0 32 ............................ TGCGACGCCGCCGGAACGCGCGGAGCAGATCG 40487 28 100.0 32 ............................ AACAGGTCGAGTGGTATGGCCGGAAGCTGGAC 40427 28 100.0 32 ............................ GATCTGGGGCGGCATCATCACCGCAGAATCTA 40367 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 26 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCGACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCGCCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCAGGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //