Array 1 812985-812221 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTZ01000005.1 Streptococcus ratti FA-1 = DSM 20564 strain FA-1 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 812984 36 100.0 29 .................................... ATCAAAACGCTAACGCTGCTATCTATGCG 812919 36 100.0 30 .................................... CCCTGGCATTGAAAATAGTTTTAAAAAGAT 812853 36 100.0 30 .................................... TGATTTTGATACATTTATCGACGTTTTTGG 812787 36 100.0 30 .................................... TATTGCTTTTGACCTAACAGGCAACTATGT 812721 36 100.0 30 .................................... GTGCACTATATCATCAAGGATAGCTACTGG 812655 36 100.0 30 .................................... TGATACAAAAGATAGTTTTCAAGGCTTGCC 812589 36 100.0 30 .................................... TAACAAGCGGATAGCAGTTTGAATGTCTTT 812523 36 100.0 31 .................................... ACAATAGCTGTTGCAATTGTGCCAAAGGCTG 812456 36 100.0 31 .................................... CTTCAATTACTGGCTTATCGGCTTTTGGCGC 812389 36 100.0 31 .................................... ACAATAGCTGTTGCAATTGTGCCAAAGGCTG 812322 36 100.0 30 .................................... TACAACCTGATGATCTTACCCGTGGGGATA 812256 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 99.8 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GAGAAAAAGGGATACTGGGTTGAATTTCCTGAATTTGGTGGTGGTACACAAGGGGAAGATTTGGAAGAAGCTATGAAGAATGCTCGTCAAATGTTAGAAAGTGTACTGGCATCTTATTTAGATGAGGGAATGAAATTACCTAGTCCAAGTGACATAAGGGAAGTGTCTGTCGATGATGGTTTCGTTACCATGATTCAAGCTGATCCTAGTCCTTATCTTAGAAATAACAAAGCCATTCGGAAAAATGTGACGGTTCCCGAATGGTTAGTGCGATTGGCAGATCGTGATCAAGTGAATTATTCTGAAGTACTAACAAAGGCTTTGGAAAAGAAATTACAATTATAAATAAAAGTAGGAAGTGCTGGAAATGTTGATTTTTAGCGCTTTTTAAGGTATAATATAAATAATTAAAACTTTAAAAAGGAATCATTTCGAAGCTGAAATCTGGCTGAGATGAATAGCGCGATTACGAAATTTCGGGACGAAAATTGGTCCACGAG # Right flank : CTAATTTTGAAATTGGTTTGTCGGTCTTTGATCTTTTAGGTTAAGTCTACAGTGGGAGAGAACAGATTGAAAGAGAATCTACGGATTTTCTTTTTTTAGTTTAAGCATTGAAAAAACTGCAGCGGATTCACTGCAGTTTTTATGATGCGGCTTTTAGTATGTTTCGCGTCCTTTGGCGCAAGCAAATACCAGCTGTATAATGGATAGTTTACTTGTCAGACAGGATAGGCGTCAGCTAATAACAGTGCCGATAATTTCTATGTCGTCATCTTCTTGCAAAATAATATCGTCATAATGGGGATTAATCGAAATCAGCCTGATCTCATGGTCTTTTTTGTATAGTTTTTTGAGATAAGCTTCATTGTTGACAATGACAACGATAAATTGACCGTGGTAAATTTCCTGTGTTTTCTTTACAAAGATGACTTCACCGTTATAAAACAGAGGTTCCATACTGTTGCCGTTTACCCTGAGAGCAATATCATGTTTAGGAATAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 918850-916811 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTZ01000005.1 Streptococcus ratti FA-1 = DSM 20564 strain FA-1 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================== ================== 918849 24 100.0 37 ........................ TAAAAACCCTTGATTTTCAAGAGTTTTTATTTTGTTT 918788 24 100.0 37 ........................ TGTGCCGTCAGCGTCGACTTGCCAGATGTAACCGTTT 918727 24 100.0 37 ........................ TTAGCTGGCTGATACGATGACACATCTAAAAAAGTTT 918666 24 100.0 37 ........................ CTGCATCTTTTAGCTCGTCAAGCGTACCAGAGAGTTT 918605 24 100.0 37 ........................ TAGACCGTTTTTACCATTCAATCCTAAAAGAAAGTTT 918544 24 100.0 37 ........................ TAGGTGTTTCAGCAAATGATAAGGTAACGTTCGGTTT 918483 24 100.0 37 ........................ TGATAAACTTGATAAATTAATTAAATTATTAAGGTTT 918422 24 100.0 37 ........................ TACCATTGGTACAAACGGATTGACAGTTATTTCGTTT 918361 24 100.0 37 ........................ TAGTCACATACGACAAACCGGCAGCTATTTACAGTTT 918300 24 100.0 37 ........................ TGAGTGATTCCAGTTGCCGCCTGTTTGCGATCTGTTT 918239 24 100.0 37 ........................ TTGTTGATAGTATGTGTTACACTTGCAGGCTGTGTTT 918178 24 100.0 37 ........................ CCCCTGCATGTTCTGATAGTTGGTTTTGTGTCAGTTT 918117 24 100.0 37 ........................ TCCGGCTGATTTCAGAGCGTTAACAGCGTCAAGGTTT 918056 24 100.0 37 ........................ TATGACGCTGAATATATTTATGCGTCTTTTATGGTTT 917995 24 100.0 37 ........................ TAACTCTTGTCAAACCTAACAGATGAAAGTGTTGTTT 917934 24 100.0 37 ........................ TGACAGAACAAATCGTGACAATCGCAAATAACGGTTT 917873 24 100.0 37 ........................ TAATGTATCGGATAAAACAGCTTATATCTATGAGTTT 917812 24 100.0 37 ........................ TAGTAGTCACCTACCTTAAAATTAGCATAGCCAGTTT 917751 24 100.0 37 ........................ TGATCATTGTATAACTCGCACTTAATACTGTTTGTTT 917690 24 100.0 37 ........................ TTATATCCGTTCAAGCAAAGAGTGGTGTTTTAAGTTT 917629 24 100.0 37 ........................ TGGCTAAAACCTATCTACCATCTCAATTTAACAGTTT 917568 24 100.0 37 ........................ TATCCAAAAATTGACCGGTCAGTTCATAGAGTGGTTT 917507 24 100.0 37 ........................ TAGGATTTTTAAGATTGTTAAATCCTTGTTGAAGTTT 917446 24 100.0 37 ........................ TAGACTTTGTAAGGCTCATCTCCGAAGGCTGTAGTTT 917385 24 100.0 37 ........................ TGATTACTTTATCGACATCAGCTCTTATCAAAAGTTT 917324 24 100.0 37 ........................ TGACTTGATAAAGTCAAGAGCCTTAGCTCCTGTGTTT 917263 24 100.0 37 ........................ TAACGATCGAAGCACCGCTGCCATTGATACTCAGTTT 917202 24 100.0 38 ........................ TTAGATAGGATAGATGCCGTATAGCTAAGTATCAGTTT 917140 24 100.0 37 ........................ TGGCCGTGTTGCAGATGTTCCAACTGATGCGGTGTTT 917079 24 100.0 38 ........................ TATGGGGCAGGCGCTATCTTTACAGTGAACACTGGTTT 917017 24 100.0 37 ........................ TAAAATGAGCAATAAAACAGAGGTTTATATGATGTTT 916956 24 100.0 37 ........................ TGATAATGTTTCTAATGGTGATTTACTGATGAGGTTT 916895 24 100.0 37 ........................ TTTATCCAAAGACGTTTTGTGACCTTGTTTTTTGTTT 916834 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ====================================== ================== 34 24 100.0 37 TACCCGCACACGCGGGGGTGATCC # Left flank : ATAAGAATAAAATCATCGAAATTGGCGCTATTAAGGTTTCTGGATCAGAGTTGAAAGAGTGTCATTACTTAGTACAGTGTGATAATACACTGCCAAAAGAAATTGTGCAGCTGACAGGTATCACAGATGATATGTTACAGCAAGAAGGTGTAGATATTGAGTTAGCGCTTAATGGATTGTTGAATTTCATTGGCAGTCTAGATATTGTAGGATATGGTGTTAATTTTGATTTGACATTTATTAATACTAAATTAACCGATCTTGGTTATCCTGTCATAACGAATTCAGTGTATGATTTGATGAAGTATGTGAAATCAGAGAAATTATTTTTAGAGAATTATAAATTACAGACGGTGCTGAAATCATACGGGATAGATGAGAAAGTTCCTCACAGAGCTCTTCTTGATGCAAGACTCATTCTAGACTTGTCGACAAAAGTGAATAAATTTTTGACTAGGATCAATCAGAAGTAGCGATTTTATTGGGATCTTTTAGTGTTT # Right flank : TGTCCTATTATGAACTACATAAAGATAGTCTTCAAGACGTACGCCTGGTATCAATGGATGGGGTAAAAGAAGCGGTTGTGGGTAGGCATTTAGCGCAACTGCAATCAGAACTCTCTGGTCGCCCTCTGCGATGGAGTCATGATCAATTAGCTGAAGGATTACAGACAGCGATTGATAATAATTTCTTTACAGATGGAAAACATGCGGATTGGATTACTCTTGCAGTAGATAATGATACTGGTGGGCATAATTTTATTGACTCTCTGAGAGAAAAGGGAGCTACTATTAATGAGGATTTACCAGATTTACAACCAGGGCAAGATAAGACAGACTGGAACGATGCTTTAAAACAACATAGAATTTTGGGTCTGTCTGATGGTAGGGAAACTTATCAAACAAGGAGTGAAGAACAGGAAGTGCAACTAAAAGATATCAGTACATTACATTCTGAATGGAAACAGGAATTAAAAAATAAGGTGACCCAACATTTAGGGCACACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //