Array 1 25-592 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTPX01000038.1 Pseudomonas aeruginosa strain AZPAE14971 AZPAE14971_contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25 28 96.4 32 .............C.............. CGCAGCAGCGCCCAGCCCTTGGACGCCATTGG 85 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 145 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 205 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 265 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 325 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 385 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 445 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 505 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 565 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38682-40446 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTPX01000015.1 Pseudomonas aeruginosa strain AZPAE14971 AZPAE14971_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38682 28 100.0 32 ............................ TAGATGCCGTGGTGCAAAGAGCGAAAGCACTA 38742 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 38802 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 38862 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 38922 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 38982 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 39042 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 39102 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 39162 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 39222 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 39282 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 39342 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 39402 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 39463 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 39523 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 39583 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 39643 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 39703 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 39763 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 39823 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 39883 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 39943 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 39999 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 40059 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 40119 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 40179 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 40239 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 40299 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 40359 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 40419 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 50730-49321 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTPX01000015.1 Pseudomonas aeruginosa strain AZPAE14971 AZPAE14971_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 50729 28 100.0 32 ............................ TTGGACAACGGCAGCGCCATTCCCCGCGTGAC 50669 28 100.0 32 ............................ GTTCTCCGCGTTGTGTTCGCGCAGGCTCTTGA 50609 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 50549 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 50489 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 50429 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 50369 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 50309 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 50249 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 50189 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 50129 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 50069 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 50009 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 49949 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 49889 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 49829 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 49769 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 49709 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 49649 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 49589 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 49529 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 49469 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 49409 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 49348 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : AATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //