Array 1 1249253-1251728 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP078012.1 Streptococcus equi subsp. zooepidemicus strain SEZ_18-036 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 1249253 26 100.0 39 .......................... TTTTGTTAGAGGTGGTCTAACATTTCTCTCAATGTCTCG 1249318 26 100.0 40 .......................... CTCTGATGTAAACTCATCTTCGGCCTCGGCCAGAGTCTCG 1249384 26 100.0 41 .......................... TATACAATGTTGTCTTTTGCTAATTATTAATTACTGTCTCG 1249451 26 100.0 41 .......................... GAAAAGCGATAAGCGTCAACTTCTGGTGTTGCATGGTCTCG 1249518 26 100.0 40 .......................... GATAGCCTCAAGTCTTTGGTTATCTTTTAAAACCGTCTCG 1249584 26 100.0 41 .......................... ATCTCAATACTGATAACATCCACATTCATTTTGGCGTCTCG 1249651 26 100.0 39 .......................... GCTTACCCAAGCCACTTTGTCAGTTGCTTCAACGTCTCG 1249716 26 100.0 39 .......................... AGATAAGCTAATGCCTTCAAATTTAGCCATTCCGTCTCG 1249781 26 100.0 41 .......................... AATACAACCAATGAGGTAACATTGAAAAAGTTTCGGTCTCG 1249848 26 100.0 41 .......................... CCAGTAAAAATTGGTCAGGTGGAGCTTTGGTTTGAGTCTCG 1249915 26 100.0 41 .......................... ATCGCCGGATAATGTTGTACTATCAATATGCTCACGTCTCG 1249982 26 100.0 40 .......................... CGAGAGAAGCTAAAGTTGAAAGTATTGAAGCTAAGTCTCG 1250048 26 96.2 40 ..T....................... TTTCAAAGCGGAGTAGATGTACTTCAAAAATTGGGTCTCG 1250114 26 100.0 40 .......................... CCTTTAGGTCAGTTTTAACGTTTCCCCACCTAGCGTCTCG 1250180 26 100.0 40 .......................... CTTTTTTGCCACACGCAATAGCAAGGCCCGGCAAGTCTCG 1250246 26 100.0 40 .......................... TATTTCCAGATGTGCAGTAAGATCTAGCACATAAGTCTCG 1250312 26 100.0 39 .......................... GCGCACCTTGTCAGCAAGCAGCTTATCGTCAGCGTCTCG 1250377 26 100.0 39 .......................... CCGAAGTGTCAGAGATACTCTTTACTTAGTTAAGTCTCG 1250442 26 100.0 39 .......................... ACGTTTGTTATCCTGTAAAACAATACCCTTAACGTCTCG 1250507 26 100.0 41 .......................... CTGACCAAGCTGAGCAAAGTTTGCTGCTTGCAGCTGTCTCG 1250574 26 100.0 41 .......................... ATTCCCGGCGGCTTTAGATAGGTGAATAGGGGGCGGTCTCG 1250641 26 100.0 41 .......................... GTCATCTCGGTACCCTGAGTAATAAAGTCTCCTCAGTCTCG 1250708 26 100.0 39 .......................... TCCTACCTCTCAACCTTTATCTTGATTATATTAGTCTCG 1250773 26 100.0 41 .......................... CTCATCACACCAAAAATAAAAAGATATTTTTTTACGTCTCG 1250840 26 100.0 40 .......................... AGGTCTTGCGATTTTTTGTAAGCCTTTGTCTTACGTCTCG 1250906 26 100.0 41 .......................... TAATTCTACTTCTAATTTGACTTTTTTCCGATTTCGTCTCG 1250973 26 100.0 40 .......................... ATTATACGCCCCTTGCTTAACAGTATACCCAAAGGTCTCG 1251039 26 100.0 40 .......................... TTCGCTCGTTTCGCTGACTTTGTTTTTGAGGTCGGTCTCG 1251105 26 100.0 40 .......................... AATCATTTTGCACCTCCATCCCCACTAACTCAACGTCTCG 1251171 26 88.5 41 ...TT.G................... ATAAGCTAAACTATTGAAATATTTACCCAGATTTTGTCTCG 1251238 26 88.5 40 ...TT.G................... ATCAACATAGTTGATGTAAGTATAAACAAAGTTGGTCTCG 1251304 26 88.5 40 ...TT.G................... TGCTTTTTTGTCTCGCATAACTGTTAATGATGTTGTCTCG 1251370 26 88.5 40 ...TT.G................... ATCTAGGCTATGTTTTTTATTTTTGAAAAGGGCAGTCTCT 1251436 26 88.5 41 ...TT.G................... CAAAAAATTATTAGCTTTTGGTGTCGGAATGTTGCGTCTCG 1251503 26 88.5 39 ...TT.G................... CCGATGACATCGCAACCTAACCAATTATACAACGTCTCG 1251568 26 100.0 41 .......................... TGAAATAGCAAACTGTATAGCATCACTATAGCCATGTCTCG 1251635 26 100.0 42 .......................... TTGGAATCAAACCTAACATCTGAATGTGTTAAGGAAGTCTCG 1251703 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ========================================== ================== 38 26 98.1 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : TATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACGGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGGGTCACTCATAAAATGCTGTGAGACTCGCGCTAAAATAAGCTAAAAAATAGAGAAATGGGAGGTTATAGCTAAATATGTTATTAGCTAGCCTGTATCATTTCTCTATAAACTGTGCTATACTGCGCAGTCTCG # Right flank : TTTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTTGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGCTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGTCTTCTCTTTTGTCATGTTCAAAGCAAGCATAGATAAGTTTCTTGAAATTGTCAAAATTTATGTACCTAAAAGCATTGCATTTGATGCCTTTGATAAATTTGTTAGTCGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATTAAGGTGTTCAAAGCTGTTTTGAAGGGGTGATTGAGATGAGGCATAACTCAAAGAAGAGCTCTGTATTCTTTTCTTGCAAATGAAAAAGAGGCAGCTGATAAAGGTCATAATAGCC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //