Array 1 1536-3761 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBLZ01000092.1 Neisseria meningitidis strain P4077 NODE_24_length_26839_cov_264.084, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1536 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 1602 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 1668 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 1734 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 1800 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 1878 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 1944 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 2010 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 2076 36 100.0 30 .................................... ATATCGTACTCTTTTACGTTATTAACAAAT 2142 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 2208 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 2274 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 2340 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 2406 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 2472 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 2538 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 2604 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 2670 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 2736 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 2802 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 2868 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 2934 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 3000 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 3066 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 3132 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 3198 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 3264 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 3330 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 3396 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 3462 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 3528 36 100.0 30 .................................... AGGCACTCGGCGGCGGATTGAAACGGGATA 3594 36 100.0 30 .................................... TTAGTTGGCTGTTCCTGCTCATCATCCGTT 3660 36 100.0 30 .................................... TCGAGGATTTCTTGGGACATGGTTTTCTTT 3726 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 34 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //