Array 1 87361-86372 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWER01000018.1 Klebsiella oxytoca strain WCHKO085010 NODE_18_length_144831_cov_67.6258, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 87360 28 100.0 32 ............................ TTATCCACGGCTTCCAGCAACTCGGGGTTTTC 87300 28 100.0 32 ............................ AAATGGGCCGCCAACGAAAGCAAGAGCACCTC 87240 28 100.0 32 ............................ AATACTGGAAGGATATTAAGCGTGGCGGTATT 87180 28 100.0 32 ............................ ATATCCGCCGCGCCGGATAAGCCTTGCTGCCC 87120 28 100.0 32 ............................ ATCGTGTCTGGGAGAATGTCTTTGCTCATAAT 87060 28 100.0 32 ............................ TGAAATTGATAGAAGGTTCTGAGCAAACCTGC 87000 28 100.0 32 ............................ ACGATGTGAACGCTATCGCTATGCACACCACT 86940 28 100.0 32 ............................ TCGGTGCGCAGTCCAGATATTGCGATATACAC 86880 28 100.0 32 ............................ ATTAAAACCAATAGTCTGACGATCCAGCGCCA 86820 28 96.4 32 ..........C................. AGATAGCACCGCCTGGGCGCATATCTTTCGCC 86760 28 100.0 32 ............................ CGATGCCTCCGATAAGAGAAAAGGCGTTCTCT 86700 28 100.0 32 ............................ CTGGAAACATAGCAAATGGCACCGTGTTACAA 86640 28 100.0 32 ............................ TCAAAAAGTACGGACGGTGGACGGTGAGCGAA 86580 28 100.0 32 ............................ ATTCGCGTTAACTACGAAGACAGTAACGGTAA 86520 28 100.0 32 ............................ AGATAGCCACCGCCGAGTAAGACGATTGCCCC 86460 28 100.0 33 ............................ CTGACCGGTATCAATTACGCGCAAATCCATTTG 86399 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGCAGCCCCGAGCGGCTGATGCGCCGCTCGGTGAGAAAAGGCTGGCTGACACAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCGACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCAAATGGGCAGAAGTTTCCGCTATTTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATAGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTGACGAGTGCTAAAACAAACCATAACCGGCGCGGTCTTTCGCGCCGATTTTTCAATCGCTAATTAAAACCCTTTTTTATGATGAATCTCTATCTTATTGATTTTATATAGTGATTTTATAAAAGTCGGAAAAAGGGTTGTGAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTATAGTGGTTAGGCTTCA # Right flank : TCGTGGCGGTTACGGGCGCAGAGACAGGGCCGTCAAAGCCGAAGAGGGAAGCGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAATTATCCCGGCCTTCAGCATCTGGCGCGTTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 97139-95789 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWER01000018.1 Klebsiella oxytoca strain WCHKO085010 NODE_18_length_144831_cov_67.6258, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 97138 28 100.0 32 ............................ AAAAACTGAGCGGCCGCAGAATGAAGTTGTAA 97078 28 100.0 32 ............................ TCATTTGGCGACGTGCCTTGTGCGCGCATTTC 97018 28 100.0 32 ............................ GTCAAAAGAATGATTTCCTGCACAGGGTTCAA 96958 28 100.0 32 ............................ AGGAGCGGGTCATATTCCACCGTCGCGGCTTT 96898 28 100.0 32 ............................ GGAAGACTGGCCTAATTATGAGGTGCGTTATC 96838 28 100.0 32 ............................ TGCAGCAGCGGGTAACGTTCCTGACGACGACC 96778 28 100.0 32 ............................ CAATACTCACCATTGATGAGCAACGATAAAAA 96718 28 100.0 32 ............................ GTAACCGCATGTCGGCTTTTGCTGCATGGTGG 96658 28 100.0 32 ............................ TTCGGCCATACCGCGATACGACGCTTAACCAG 96598 28 100.0 33 ............................ TCGACGCGCTGGCCTCGCTGCTGATTTCTACGA 96537 28 100.0 32 ............................ TACCGGACAACGATCACCCATTGTCATGTAAC 96477 28 100.0 32 ............................ TGTAATGGCATCGGGAGGCTGTCATGTGGATA 96417 28 100.0 32 ............................ GGCTGCGTCGGGACCCACCACATCGCCAGCAG 96357 28 96.4 32 ........T................... CCTGGCCCCGGCAGTATCTATGATGGTCAGGG 96297 28 100.0 32 ............................ GGAAGAAATCACCGCCATGCTTACCGCAGGAG 96237 28 100.0 32 ............................ TGCCGTGGCGGGGTTGGCTCCAGCCACAATCC 96177 28 100.0 33 ............................ TGCGGCTGCACGACCAGCGTCAGGGAAATCACT 96116 28 100.0 32 ............................ CTCTTCGCGTCTGCGATACCGGAAACGGAGAC 96056 28 100.0 32 ............................ ATGCACCGGTAGAAGAACGCTGATCAATTGCC 95996 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 95936 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 95876 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 95816 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATCCATCAGGTGGTGGATAAGTTTATCGTTGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGTTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCCAACGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGTCAGGTGATCGTTGAGCTGGATAAAGAGAAAAATGCGCTGACCTATGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTGGACCCTTTTTTATTCCCCTTTTTTAAGCTATTGATTTTATTAAAGAGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTCGTTCGTTCA # Right flank : AGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACCGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAATGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGAAAAAGTGTCGGGTTCAGGTCAACGGCGGCCGCGTGGAATATGTTACGAGCGAGGGGAACGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCAGTTAGCCAGGCTGCAATGCGTGAGTTCGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCCGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //