Array 1 16784-13995 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFOR01000005.1 Vibrio cholerae HE48 vcoHE48.contig.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16783 28 100.0 32 ............................ TTGGTTTATTCCTTCGGGGCTGAATGCAGATA 16723 28 100.0 32 ............................ ACTTATTGAGTTAACTGATGGTTCAATAAAGT 16663 28 100.0 32 ............................ TTTTTGTAGGCATCTAACAGTTCATTTGCGTA 16603 28 100.0 32 ............................ TCCTGATGAAGACTCAGGAACGTAGCGAGGAA 16543 28 100.0 33 ............................ CAATAATTACTATAAAATACAATATTACAATAA 16482 28 100.0 32 ............................ TCGAACGTGATGTTGAGTGACTGGGCGTCCGT 16422 28 100.0 32 ............................ AAGAGGCAAACTCAGCAATAGGCGTGTCCGAT 16362 28 100.0 32 ............................ TTGAGGTGATGAAGTCTAGAAAGTCAGCGACT 16302 28 100.0 32 ............................ TCGAATGAGTTGCAAGCATCGAAATCAAGCAA 16242 28 100.0 32 ............................ TGTTTGTGTACAACTGGGCGTGTATTTACAAA 16182 28 100.0 32 ............................ TAGCTGCTATCTGCTTCGGCGTTGGTATCGTC 16122 28 100.0 32 ............................ ATCTTTGGTCCACGTACCATCTTCGGCCATCC 16062 28 100.0 32 ............................ TTGATGAACTGATCGAGGACACATTTAAGGAA 16002 28 100.0 32 ............................ CAATTGTATCTCCAAAAAGATTGATCGTATCA 15942 28 100.0 32 ............................ TCGATGCTGCAAACTTTGGTGGTGTTAACCCA 15882 28 100.0 32 ............................ AAAGATGGTCATCGTTTCTTTGATTGCGACAA 15822 28 100.0 32 ............................ GACAGGCGGCGAAGTTGAAGCAACGTTAAGCG 15762 28 100.0 32 ............................ ACACTGCAAAGCGCAGTCGTGCGTGCGATGTA 15702 28 100.0 32 ............................ CTGGTTATTAGGTCGCCTTGTTGGCACCTTTT 15642 28 100.0 32 ............................ AATATGGCGATACGATTAACGCTCTAACCGTT 15582 28 100.0 32 ............................ AGCCCATACTTGCATGCCCTTTTTTGAAAAAG 15522 28 100.0 32 ............................ ACACGATGCGGAAAGCGTCACGCCCAAAAAGA 15462 28 100.0 32 ............................ AGAAGGTAGTTATGCGATCATCACCGAAAAAA 15402 28 100.0 32 ............................ ATTGGTGAAAGGTAGCCAACTCGCCATCCTCA 15342 28 100.0 32 ............................ GTGAATACCTAACCAAGCGCGGGTTTGTTATG 15282 28 100.0 32 ............................ CAATTAAGTCAGATCCGTCCTTGCAAAGCTAC 15222 28 100.0 32 ............................ TTACGCTACCGCAGCAGATATCATTGATTGGT 15162 28 100.0 32 ............................ GTTATTGAATTTTTCAAGTCTATCCCCGATTA 15102 28 100.0 32 ............................ TAATCACATCATCAATCTGACTCAGCATTGAC 15042 28 100.0 32 ............................ TCTTTAAACTCGTTACGTAGCTTGCGGAACTG 14982 28 100.0 32 ............................ TATCGGATTCTCCAAACGAGAAAGGCGCTCAG 14922 28 100.0 32 ............................ AATCCTCAGCCCATTGCGTAATAATTCCACGA 14862 28 100.0 32 ............................ TGAATAACCGCCGCGCGCAGCCATTTTTCCGC 14802 28 100.0 32 ............................ ACAGCACAAATACTAGCCACCCAACAAAAACT 14742 28 100.0 32 ............................ TTAATGAGTACAACACGATTGATGAGATGGTT 14682 28 100.0 32 ............................ ATACGAGCCGTTGATAACTGGCATGAGCCTAT 14622 28 100.0 32 ............................ AACAGGTGACAGGGTAGCACCTCAGCAAATTT 14562 28 100.0 32 ............................ TATTTTTTGTGATTTTGAGGATTTTCCAAATA 14502 28 100.0 32 ............................ TTTAACCATGGCCCTGACGTCACTGGTAGCCT 14442 28 100.0 32 ............................ CAGCACTACCAGTTGCTCAGTTTTGTGACCAC 14382 28 100.0 32 ............................ TCTGTTCTCCGGTGGTCTTGTCACGCCAAACG 14322 28 100.0 32 ............................ TGACGCTGACAGGTTGTGGCGGCTCTTCATAA 14262 28 100.0 32 ............................ TGCTAGCCCCAAAATTCTCACATCAGGCTCGG 14202 28 100.0 32 ............................ GCAATTTTGGTGCCATCATCGTTGGTGATGTC 14142 28 100.0 32 ............................ GCTTGGCGCCGTCCTTCTGACCCTAACTCTTT 14082 28 100.0 32 ............................ ACTGAGCGCGAACATCACTGGAGCGTAACTAG 14022 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 47 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAAGGGATCGCATCAATAGCATTATCTCAATGGATTTCGTATCTGTTCGAAACACAAGAAATAGAGCGGGTAGGCATGACAACATGGTCGGGAAATGATCGCATGATGTCATTAGCGACAAAGCTAGGTTTGAAGCAAGAGGCACTGCTGCGCAAAGTTCGTTATTACCAAGGGATCTATTATGATTCAGTGAAATATGGTGTGATTCGAAGCGAATGGGAAGTACGCAACTAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTGCAGCTGTTGTGTTTGAGTTTAGTGGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAACTTGTTGATTTATATTAATAATAAATCGAGTAAAAATAAAAGGTTATTCTTAGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TAGTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCAATGAACCGCGGTGGTTACGACTGTTGTGTTTAGGTTTGGTTGTTATGCGTTGCCAGCCCCTTAGGCGGGCGTTAGTTTCTCTCAGGAAAATCATCAAAAATTCACGCACAAGGTTCTGAAAATTTAGCCTTTATCGTTCAAGCTGCACAATTTAGCTTTTGGGTTTTTCCTGATGTTGATTTGGTAGAAAGCGTTGAAAGTTCAGCGGTTTCAAAATCGCGGATAACCAACAAGCTTTGATGCTTCAATGTTGTCGGACGTTCAACTTGATCAGTTTGGTTTCATAAAAGGTTGAATCATCGCTGTGATCTGGCTTTCTTTGTGTGGACTCTTAACGTTTTGGCAGCCAACTTCACAGCTTTTGGCGTTGGACGTGTGTTTGCGTGATGCTTTTGCGTAAAATTACTTTCAAGCAAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 137364-140393 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFOR01000012.1 Vibrio cholerae HE48 vcoHE48.contig.11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 137364 28 100.0 32 ............................ TAACCGGAGGCGTACACTCGATAGAGGCAGCG 137424 28 100.0 32 ............................ AAGCGTTAATTCTTTCAAACTCAGCCCATCTT 137484 28 100.0 32 ............................ ATCTTGAATTAGAAGGCCATGCCGAAGCGAAG 137544 28 100.0 32 ............................ TTCCCACAAGTACTTCGCTGTGCCTGCTGATT 137604 28 100.0 32 ............................ TAACCCTGACCCAGAACCTGAGCCAGTGCCAC 137664 28 100.0 32 ............................ TTACACTGCATTCGGGCGAATGGCGTCTATGG 137724 28 100.0 33 ............................ AATATCCTGTCATGGTTTAGCGAGCGTTTTACT 137785 28 100.0 32 ............................ TGAGCGAGATTACAGTAATGGCAACTTTGTTG 137845 28 100.0 32 ............................ TTGATAACACAGAGAGCGTTCCACTCGCTCAG 137905 28 100.0 32 ............................ ATTGTCGCGTTTAACGAATACTCTTGCAGCCA 137965 28 100.0 32 ............................ TTGAATTCTTTTACATAGTCACTTTCTTTATC 138025 28 100.0 32 ............................ TCTCATGAGAGCGTCACGAATGCGACTGACAG 138085 28 100.0 32 ............................ TGTTTACTACTGGCAAGAATCTGACGGTTATT 138145 28 100.0 32 ............................ AATCAGTGGCGTTAGCGTTGACTGTTTGCGCT 138205 28 100.0 32 ............................ CATCACAACGCGCAAAAGAGCTAGGTTGTAGA 138265 28 100.0 32 ............................ GCTACAGCGTTAGTGCTGGAAAGTGAAACTCC 138325 28 100.0 32 ............................ AGTCTGTGCTTGAGCTTGATGCGCCAGTAATC 138385 28 100.0 32 ............................ ATCAACAAGGGCCGCAGCAACGCCAGCAGACG 138445 28 100.0 32 ............................ TTTGTCATTCGTTTTCTCCCTCTCGTCCATAT 138505 28 100.0 32 ............................ AACGTTGTCAGCAATAGTAACAAGGTTTGATG 138565 28 100.0 32 ............................ TGACGAGTCAGGATAAACAACGATGCGCTTAT 138625 28 100.0 32 ............................ TTTCTTACCGATGGCAGCAGGCACCACGCCTT 138685 28 100.0 32 ............................ TAGGTGCGGATAGTTGAAGATTACCCACTGAT 138745 28 100.0 32 ............................ TTTATCTTCTCGGAGTATTCTTTCTGTAAGTC 138805 28 100.0 32 ............................ TCTTATGGCATTAGCACCAAAAACACTCACTG 138865 28 100.0 32 ............................ TTGTAGCCAACAATTGACGATGGATTGGACAT 138925 28 100.0 32 ............................ ATGAGCCGCTTTACCCTGCGCAAGAAACTGGC 138985 28 100.0 32 ............................ TTCTTTGCGCATCAGCGCATGACAAATGTTGT 139045 28 100.0 33 ............................ TGAATACGCTGGCGATCTTCTTGATCTCTTTGT 139106 28 100.0 32 ............................ TTTTGCCACCGCTGCTTTGTTTTTGCTAGCTT 139166 28 100.0 32 ............................ TGTTGTTATCCTGATACCAGCCGACACATCCG 139226 28 100.0 32 ............................ CGGCACGGCGCTATGTGGATTTGTGTTTAAAA 139286 28 100.0 32 ............................ AATAAAGTTTGATGTATCGACGTAAAGCATGC 139346 28 100.0 32 ............................ TTTCTTAGGGCTTCGCGGATTTTCTCCCTGCC 139406 28 100.0 32 ............................ ACAACACACCATCATTGATAGATAGCGATGAT 139466 28 100.0 32 ............................ CCACTCATTCAGCCCCTGCATTTCCTGTCTTT 139526 28 100.0 32 ............................ TCGAGATGAAGCGCGAGAATTTGGCGAAGTCG 139586 28 100.0 32 ............................ TGTCAAAGTTGACCACTTGGCTTTTACTTTTG 139646 28 100.0 32 ............................ TGCACCAAAAAAATTCGGCGGCAAGTGGATGT 139706 28 100.0 32 ............................ TTTGATTTTGCTTTAGCAAGCTCAACGCACTC 139766 28 100.0 32 ............................ ACAGATCGCCCCGACCAATATAACGGCAATAG 139826 28 100.0 32 ............................ ATTAATCACGCATCAGCATCAATCAGCACACT 139886 28 100.0 32 ............................ TTCAACTTACGCACCGCTTCTGCGTAGTTCTG 139946 28 96.4 32 ...........T................ TTACGGGATCCAAATGCTATCGTTATTTCCGG 140006 28 96.4 32 ...........T................ CTGCGATTCGCCGCCATGAACTCATGGTGCGC 140066 28 96.4 32 ...........T................ AATGGGGACTGTAGAAGAATAAGAACTTGCAC 140126 28 96.4 32 ...........T................ TTGCTTGCTGCAATCCTAGTCGCTGCCGCTCT 140186 28 96.4 32 ...........T................ TTGAAAGCGCATACGGTAAGACAGTGTTTGCT 140246 28 100.0 32 ............................ TTCTATGACATTCCCGCCATGAAGTAATTGAA 140306 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 140366 28 85.7 0 ..........AT.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 51 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGCAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTTCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCTAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCACTGCGTAACTGGTTATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //