Array 1 1271381-1270993 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047981.1 Aeromonas caviae strain 1607-10029 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1271380 28 100.0 32 ............................ GCCAGGGTGCAGCTTGGTGAGGCTATTGAGCC 1271320 28 100.0 32 ............................ TGTCTGCACGGCAAAAAAGCCGGCTGGATGAC 1271260 28 100.0 32 ............................ GGTATCCGGCGGGCCAGGGTGAACACGTCATT 1271200 28 100.0 32 ............................ TTTGATGTCGCGCATCACGCCATCGAACGCCT 1271140 28 100.0 32 ............................ ACTGGTGCCAACCTGTATCGCCTATCCAAGAA 1271080 28 100.0 32 ............................ TGGATAAACCACGCGATGGTCTGGTCGTTCAC 1271020 28 82.1 0 ..................TCA....TT. | ========== ====== ====== ====== ============================ ================================ ================== 7 28 97.4 32 CCTCGCTGCCGCACAGGCAGCTCAGAAA # Left flank : GGAGCGGTGTCGTGCGTCGCCATCACATGTATGACCAGACCTTTCAGCGCGCCTTCAAACGTGCCGTAGAACAAGCAGGCATCACGAAGCCCGCCACACCGCACACCCTCCGCCACTCGTTCGCGACGGCCTTGCTCCGCAGCGGTTACGACATTCGAACCGTGCAGGATCTGCTCGGCCATTCCGACGTCTCTACGACGATGATTTACACGCATGTGCTGAAAGTTGGCGGTGCCGGAGTGCGCTCACCGCTTGATGCGCTGCCGCCCCTCACTAGTGAGAGGTAGGGCAGCGCAAGTCAATCCTGGCGGATTCACTACCCCTGCGCGAAGGCCATCGGTGCCGCATCGAACGGCCGGTTGCGGAAAGTCCTCCCTGCGTCCGCTGATGGCCGGCAGCAGCCCGTCGTTGCCTGATGGATCCAACCCCTCCGCTGCTATAGTGCAGTCGGCTTCTGACGTTCAGTGCAGCCGTCTTCTGAAAACGACAGGCATACCGAA # Right flank : CTGGTTGCAGCTAAACCGGAAGGGCCGCTGACTGCAGGTTCATTCCACTCCAAGATCAGTGCAATGCTGGTTATTGAGCTACTGGGTCAACAGCTATTGGAAAATAGGCCAGAGCTGGCGGGAGCTATCTCGGATAGTGCCAAGGCTACGTTGCCTTGGTTGATACAATCGCTAGCGAGGGGAGCATCATCAATACTTGGACACCAGACTGGATCGATGTCCAATGTAATCCATCCGGGTAGTATGTCAGCCAACATCAAATGGCACACTGAGTGGCATACCACAAAAATATAAAAAATTAAAAACCCAACCTAATCAATAGGTTGGGTTTGGTATGTGGCGGAGAGACAGGGATTCGAACCCTGGGTGGCATTGCTGCCACAATTGATTTCGAGTCAATCCCGTTCGGCCACTCCGGCATCTCTCCACGGGCACTCATATTGACCCAACCCTAGCCGGGAAATCAATGTAAATCTCGTTGCAGATCAGACGACTGGCGA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCGCTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCTCGCTGCCGCACAGGCAGCTCAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1283315-1278967 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047981.1 Aeromonas caviae strain 1607-10029 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1283314 28 100.0 32 ............................ GGGATCAGCGGGATGTATTCACCCGGGATGCG 1283254 28 100.0 32 ............................ GACATCAGTAAGCTAGTGTTGGTGCAGGTGAC 1283194 28 100.0 32 ............................ AAATGCAAAGTATTCCCGGGCAAGCAGCAGTA 1283134 28 100.0 32 ............................ ATTGACGATGCGCCGCTGCTGCCGCTGGCGGA 1283074 28 100.0 32 ............................ CGTACATCTTGCGCGATAACGGCTACTCCAAG 1283014 28 100.0 32 ............................ ATCCGGAAAGATTGAAAGTTGGGCATCAGAAA 1282954 28 100.0 32 ............................ TTGGGCGAGAACCTGGTGGGGGATTTGATCAA 1282894 28 100.0 32 ............................ GGCAACAGGGAACGGATAGGTGGCCGGATCTC 1282834 28 100.0 32 ............................ TGGGGGAGCTGGCCGACGCTGCGAACACCAAT 1282774 28 100.0 32 ............................ TGTGGGCGGCAGCGGTGCGGTGCTGTACTGCG 1282714 28 100.0 32 ............................ AGGTACCTATAGAGGCTTCGGTGCTGCTGGTA 1282654 28 100.0 32 ............................ GCTTCGTTGCTATGTTTAACATCAACAAACAT 1282594 28 100.0 32 ............................ TCGGACAAGGTGGATGGTCTGTATTTCTGTTC 1282534 28 100.0 32 ............................ AACAACGCTGCCGTGTTCGGCGCCATTGTGGA 1282474 28 100.0 32 ............................ AGTATGAAGCCATCACAGCAGGAACAGTCATG 1282414 28 100.0 32 ............................ TGGATCATCTCGTAGCCCGGTTTCCGGTTCAC 1282354 28 100.0 32 ............................ AACGGCAGCAACGCGAAAGGCTCTCCACTGTC 1282294 28 100.0 32 ............................ AGTAGTGCCGCTCTGGTCAACTTCATTTGACT 1282234 28 100.0 32 ............................ TCCTAAGAAGGGAGGGGCCGAAGCCCCTCTAC 1282174 28 100.0 32 ............................ GCAACACAAACAAGATCTTGGCCGGTTACGGC 1282114 28 100.0 32 ............................ AAGAAAAGCACCGACAGTACCGAAAGCACCTC 1282054 28 100.0 32 ............................ AATAAAAGCAATCTGGAGCGCGACCTCGATAA 1281994 28 100.0 32 ............................ GGTACCGTCGCGAAAGCGGCCACCCCGGTTGC 1281934 28 100.0 32 ............................ ATCATCGGGTAGGGCTCGTCGTAGGCCGTCAC 1281874 28 100.0 32 ............................ TACCAGGTGCGGCAGGTCGCCCTGGACGAGCA 1281814 28 100.0 32 ............................ GGTAACAAGCAGGTTGCGGGGGAATACGCCAT 1281754 28 100.0 32 ............................ GGCAGCACTCCGGTCACGCAGATCATTGTCCC 1281694 28 100.0 32 ............................ TGACCGCGCAGTACAGCGCCGCCCTGCTGGCC 1281634 28 100.0 32 ............................ CAGAGCGCCAATGAGCGAGCTACCTGGGAGGC 1281574 28 100.0 32 ............................ ATCACGGCAGCGATGGACGCTCTGCGCCCGCT 1281514 28 100.0 32 ............................ AATGGAGAAAATCGTCATGGCACCAAGAAAAG 1281454 28 100.0 32 ............................ ATCGTAGACACCATAAGCGCCAGTGACTTCGC 1281394 28 100.0 32 ............................ AACGTGTATCCGCTATACCGCTTCTCCGGCAT 1281334 28 100.0 32 ............................ GAGGGCCCCTACAGCCCCGGAGGACGAGCTCA 1281274 28 100.0 32 ............................ TGCCGGGTGAGCGTGAGCGCCACCTCTGATAC 1281214 28 100.0 32 ............................ GCTCAAGCGCAATACAGGCGAATCAACTTCCA 1281154 28 100.0 32 ............................ TCTATTGCTCGATATCGTTATGATAACGGTAC 1281094 28 100.0 32 ............................ GGTACACCTGCCGGAGCCATTATGCAGATAGA 1281034 28 100.0 32 ............................ ATGTTCGCTTGTGCCCTGAGCGCTCAAGCTAA 1280974 28 100.0 32 ............................ GGAGAGCATATGGAACAGAAAGAGCTTGTGAA 1280914 28 100.0 32 ............................ CGTAAACCAGGTCACGGTCAACTACTGGAACC 1280854 28 100.0 32 ............................ GAGGCCGCCCTCCGGGGTTACCACATGTTCAT 1280794 28 100.0 32 ............................ CAGCTCAAAGAGATGGACCAGAAGCTCAAGGA 1280734 28 100.0 32 ............................ GGCATCTGGACGCGGGACTCCATCGACTGGTT 1280674 28 100.0 32 ............................ TGATCATCTGGCCCCAGAAGACCAAATTCCAG 1280614 28 100.0 32 ............................ TTGCACCAGTCAGGCCAAGTCTCCAGCACCTT 1280554 28 100.0 32 ............................ ATGCCCCGCGGCCCCGGATGTGCTCGTCACGG 1280494 28 100.0 32 ............................ AGACAGTTGGGCGATGTGCGCCACCAGCAGCC 1280434 28 100.0 32 ............................ GAAATGGGCCAGTATGACCTGGCCACCACTCG 1280374 28 100.0 32 ............................ AAACGTGCCGTACTTCCGCCTACAGGGTGGCA 1280314 28 100.0 32 ............................ GGCACCGCTGCCGAGCCGCTGGGCCTGTCCGC 1280254 28 100.0 32 ............................ ATGCCGGAGAGGGTGCGCTTGGTGAAGTTGTA 1280194 28 100.0 32 ............................ AAAAAGCAGTTCCGGGTCAGCAAACGGTACTT 1280134 28 100.0 32 ............................ ATCCTAGTTCCACAATGCTGGCGGAAATATAT 1280074 28 100.0 32 ............................ AGTGACTCCACGGCCTGTTTAATTGTGTTCAT 1280014 28 100.0 32 ............................ ACATTGGTGATGCCTGCCGCTGCGATCTTCCC 1279954 28 100.0 32 ............................ AGGAACGCATTACCTCCTGCGCCGATGTTGTG 1279894 28 100.0 32 ............................ TCTGGCTGGCCGCGCTCGGCGATGGTGGACAT 1279834 28 100.0 32 ............................ TCTCCGGCGCCCGCGGTATCAACGAGGACTTC 1279774 28 100.0 32 ............................ ACCGGATGGGCCCGCATCTTCTCGGTGAAGCA 1279714 28 100.0 32 ............................ ATCATCCAGAAACACGGCGTTGAGGGAAAGCG 1279654 28 100.0 32 ............................ TACGACATGGTGACTGGCGCAGACTTCCAGCG 1279594 28 100.0 32 ............................ TCCGCCATCAGATCATCGACCTCCAACGGATA 1279534 28 100.0 32 ............................ GGCGTCCCGTCTGGGTAGGTCGCCCCGGACAT 1279474 28 100.0 32 ............................ AGCGAGATGATCCACCCCTGGTGGGGCGTGCG 1279414 28 100.0 32 ............................ CATTCAAATAGAGCGCCATGGTGTCGACTGCT 1279354 28 100.0 32 ............................ AAGATCCGTGGCAAGTCTGGTGGTGGTAAATG 1279294 28 100.0 32 ............................ AGTGCCGCCCAGGCTGACACCCTGTTTGGCAA 1279234 28 100.0 32 ............................ GGAAACCTTGATATCGTGGCCCGACACTGACA 1279174 28 100.0 32 ............................ GTGTCTCTCGCCCATCAGCACGGCGTCGAAGT 1279114 28 100.0 32 ............................ TCAACCTCACGCACCCCGGCAGCGGCGTACAT 1279054 28 100.0 32 ............................ ACCCTCGATGTCTGCTTGCGCGAAGGCAAACA 1278994 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 73 28 100.0 32 CCTCGCTGCCGCACAGGCAGCTCAGAAA # Left flank : TGGCCGAACTGCTTAACCTTACCGAGGTGAACTGGTTGCAGGGGATGCGGGACTATATCCAGCTCGGCGAACCAGAACCCGTTCCTCAGGGAGCCAGCTTTCGTGTGGTAAGGCGGGTGCAGGCCAAGAGCGCTCACAACAAGCGTCGCCGCTCGGTGGCCAAAGGCTGGTTGAGCGAAGAGGAGGCGCAGGTTCGCATCCCCGATGCTCAGCAGAAGGCGATGTCTCTGCCTTATGCCGAAATGCACAGCCTCTCGACCCAAAGCCGGATGCGCCTCTATATCGAACACGGCCCTCTGCTCGATAAGCCTGTCGCCGGGATGTTTAACGCCTATGGGCTAAGCACCACAGCCACCATCCCCTGGTTCTGACCCTCTTTTTCAGGGCGTAGCTAACTCATTGATTTTTCAATGTCTGTTACGCCCTGATAAAAATAGGGTTCAGTGACGGATTTGGGGTAAGTTCTTTAACAATCAATTAGATAGCACTAATATGTAACA # Right flank : CATTCGACAGCCGCGTCTGGCGGCATTGTCATTTTCAGAAGACGACTGCACCAGTTGATTGGGCGTAATGGCTGTTGTGCAGCCAGCTCCTGACAGTTCAATATCAGAAGTGATCTGCACCAATCTCGACTATGCTCAATACTCGTGTGCACCAAAGCGAGGTGAGCATGGCGACGGACACCCCACGGATTCCAGAACAAGGCGTGGCCACTCTGCCTGATGAGGCTTGGGAGCGTGCGCGCCGTCGTGCGGAGATCATCAGTCCGTTGGCGCAGTCGGAGACGGTCGGGCACGAAGCGGCCGATATGGCGGCTCAGGCGCTGGGCTTGTCTCGGCGCCAGGTATACGTTCTGATCCGGCGTGCCCGGCAAGGCAGCGGCCTCGTGACGGATCTGGTGCCCGGCCAGTCCGGTGGAGGTAAAGGTAAGGGGCGCTTGCCGGAACCGGTCGAGCGCGTCATCCACGAGCTACTGCAAAAGCGGTTCCTGACCAAGCAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCGCTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCTCGCTGCCGCACAGGCAGCTCAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //