Array 1 12-1000 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZHF01000029.1 Alcanivorax xenomutans strain KS-293, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 ............................ TGCGCGAGCTGCAAACCCGGCTGCCCTGGACG 72 28 100.0 32 ............................ ACCAGGGCGGCCAGAACGCGACGGCCCCATTT 132 28 100.0 32 ............................ TTTACGGGATCGTCGGACAGGTTCACCCCGTA 192 28 100.0 32 ............................ AGAAGGTCAAAACCCGGGAGGGCGAGGGCCAA 252 28 100.0 32 ............................ GTGCACCGGCGCTTCAAGCGCCCCCAGCCCTG 312 28 100.0 32 ............................ AGGTAGGACTGGACATGCGCCTCATGGCGCCA 372 28 100.0 32 ............................ ATCAGGCGGCAACACCCAGGCAGCCATCGGCC 432 28 100.0 32 ............................ AATGCGCGGACTGAGATTGAGCGCCTGCGTGA 492 28 100.0 32 ............................ GATCACGGACGAGGAACAACGCCAGCTCAGGA 552 28 100.0 32 ............................ GCGCAGGGTGCTGGTGGCGGTCATCTACTCTT 612 28 100.0 32 ............................ TGTACAAAAAAGCGGGCAAGGATGGACAGAAG 672 28 100.0 32 ............................ TCCTGGACTTCTTCGTCGTTAGGCCAGTCCGG 732 28 100.0 32 ............................ TCCTGGAGCTGGCCAGCACCGCCGGGATACCG 792 28 100.0 32 ............................ TTCAGGGCACGCTGGGCTTTCAGCAGCTCGTC 852 28 100.0 32 ............................ CTCAATCAAGACATCATCCGGCTGCAGGATGA 912 28 100.0 32 ............................ AGCCGGTGGCTTTGAAAATTTCGAGGTGGAGA 972 28 89.3 0 ....................GG.....G | G [995] ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.4 32 GTTCGCTGCCGCGCAGGCAGCTAAGAAA # Left flank : TGCGCGATCCGG # Right flank : TGCAGGCCATGTTTATTGATAGTCATAAAGATGTCTGCTTTGAAGCAGGGGGTGAGCCAGGGCGCGAGGGAGGGGGGATCCTGAAGGCATGAGWTGAGGCCGGTATCATTGCCCTTGGACCGCTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 53-321 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZHF01000006.1 Alcanivorax xenomutans strain KS-293, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 53 28 100.0 32 ............................ AGCCGGTGGCTTTGAAAATTTCGAGGTGGAGA 113 28 100.0 32 ............................ TGAAATCCGGCGGGCTCAAATATATGCCCTGG 173 28 100.0 32 ............................ TCGATCAGGCCGTCGGCACTGGCGCCGAACAA 233 28 96.4 32 ...........A................ ACCGAGAAAGAGGCGCGGCGCCACATCGAAAG 293 28 89.3 0 ....................GG.....G | G [316] ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.1 32 GTTCGCTGCCGCGCAGGCAGCTAAGAAA # Left flank : CCGCGCAGGCAGCTAAGAAAACATATCGCCACGGATGCCGTCAGCCCAAGCCG # Right flank : GTGCAGGCCATGTTTATTGATAGTCATAAAGATGTCTGCTTTGAAGCAGGGGGTGAGCCAGGGCGCGAGGGAGGGGGGATCCTGAAGGCATGAGTTGAGGCCGGTATCATTGCCCTTGGACCGCTCCCACAAGACGATCTTGTGAGAGCAGTTAGGCAGAGTGCCTGATTAACGATACCGCGCCAGTTCCAGCCGGCCGATCTGGTTGCGGTGGACTTCGTCGGGGCCGTCGGCCAGGCGCAGCATGCGCGCGTTGGCGTAGGCTTTGGCGAGGCCGAAGTCGTTGGTGACGCCGCCGCCGCCGTGGGCCTGAATGGCCCAGTCGATGACACGGGCGGCCATGTTGGGGGCGGCCACCTTGATCATGGCGATTTCCTTGCGCGCCACTTTGTTGCCGACGGTGTCCATCATATGGGCGGCGTTGAGCACCAGCAGCCGGGTCTGATCGATGAGTATGCGGGATTCGGCGATGCGTTCCAGGGTCACGGTTTGTTCCGCCA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 394-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZHF01000055.1 Alcanivorax xenomutans strain KS-293, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 393 28 100.0 32 ............................ ATCGCCGTGCAGGTCGATCAGCTCCCGCAGGA 333 28 100.0 32 ............................ ATAGCCAAATTCCTCCTTCCAGTAGTCATTCA 273 28 100.0 32 ............................ CATGATCGCCGTGGCGGCCTTTGGATGGCACT 213 28 100.0 32 ............................ AGCGAACTGGGCTCGCGCATTCGGAAATCCAA 153 28 100.0 32 ............................ ACGTAGTCGTTGTCGAGCGTCACCGAGCTGAT 93 28 100.0 32 ............................ ACAGTGCCCAAGTAGTCGGAGCCCATGTCGCC 33 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCGCTGCCGCGCAGGCAGCTAAGAAA # Left flank : CGGCTCTGGATCATTTAATGAGTCAAGATTGTCTGGCCGGCATGCGTGACCATATCCAAATGACAGGGTTGGCTCCGGTGCCAGGCAATGCCAAGCATCGTGTGGTCCGGCGCCGCCAATTCAAGACCAATGCGGAACGTCTCCGGCGTCGCCGGGCGCGGCGTCACGAGGAAACTCTGGAACAGGCTCGGGAGCGAATCCCAGACACGGTGGAGCGCAAGGTTGATTTACCCTACGTGACGCTGCGTAGCCAGAGCACGGGTCAGGACTTCTGCCTGTTTATAGAGCACGGTGACCTGCAGGCACACCCGGTTACGGGCCGCTTCAGCCGCTATGGCCTCAGCCCTACCGCAACGATACCGTGGTTCTGACCCTTTTTTTGATTCCAATTAATACTTTCCGAAAATCAATAACTTACGTCACGCTCCAAAATTTGGGGTGTGGCGCTTCTTTTTAGCCTTGTTCTTTAAAAATCAGGGAGTTAGATTCGTTTGGTTCTA # Right flank : ATCTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //