Array 1 3119826-3116482 **** Predicted by CRISPRDetect 2.4 *** >NZ_UYXJ01000001.1 Parabacteroides goldsteinii DSM 19448 = WAL 12034 isolate Parabacteroides goldsteinii 81H9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 3119825 32 100.0 33 ................................ TTAAACTTGTAAGAGAACCGGGATTCAATTTTT 3119760 32 100.0 36 ................................ CAGTTAACGGGTTACGTCCGGTACGCGCTGCCGAAA 3119692 32 100.0 36 ................................ CGTACTTCCAACAGGTTCCTCCGGTGCATCCGGGAA 3119624 32 100.0 34 ................................ GCTGTATGCTGATGATTTAAAAGAAAATATTGAG 3119558 32 100.0 34 ................................ ATCACAATCTATAATCAACTAAAAGATAAGGCCG 3119492 32 100.0 34 ................................ GTGAACTGGCCGCCGTGATCGGAGTCAATGCCAG 3119426 32 100.0 34 ................................ TCAGCAAACGGTAAGCGTAATGCAGCAAGAAAAG 3119360 32 100.0 34 ................................ TAGTTTATCCGCAACCCTTTGATCAAAAGATAAA 3119294 32 100.0 33 ................................ TCAGCAAACGGTAAGCGTAATGCGGCAAGAAAA 3119229 32 100.0 36 ................................ TTAAATCAAGAGATATGATAGTAAAAGTAATTTGGG 3119161 32 100.0 33 ................................ TGAACGGAGAACTTGGTAATTGCCCGGGTCTCC 3119096 32 100.0 33 ................................ CGTTTACCAAATTAGTAGTAAGATAAATAAAAC 3119031 32 100.0 34 ................................ TTTAATTTACCCCTAAATAATTGGGGTAACAAAG 3118965 32 100.0 34 ................................ CAAAAGTTCGAAGAAAAGGAAAAGCCGGAGAAGA 3118899 32 100.0 33 ................................ CCTATTCTTTATTTTGAAAGAAAGGTTATATTG 3118834 32 100.0 34 ................................ TTCCATATCCAATGCCTTAACGAACGGCATATTG 3118768 32 100.0 35 ................................ GATTCAGAGGACGACGAACCGAAAGACCCAACGAA 3118701 32 100.0 35 ................................ TTCTAACCTCTCCCGATTTAATCCCAGCCATCTGA 3118634 32 100.0 34 ................................ CGCACATTGATACATAGCTCCCAGTGGTGGGTAT 3118568 32 100.0 35 ................................ TGATTATACACCAATTGGAAATGGATATATGTATA 3118501 32 100.0 34 ................................ CCGTATCAGGATTCTTACGGAAGAAGAGTTTGAA 3118435 32 100.0 35 ................................ TGACTAAGGACGTTAAAGATTTTGAGGAAGTAACA 3118368 32 100.0 33 ................................ CGCAAAAGATACTTACTCCAAGTGTAAAGAATG 3118303 32 96.9 36 ......T......................... TTCCGTTGATATTAATTTGATTTAAGTCATTAATTT 3118235 32 100.0 34 ................................ TTGGAGTACGGTTCGGCTTACGCGGTTGGGTATC 3118169 32 100.0 35 ................................ CTTTGGGGGAACGTAAAAGTATTCCGGTATATTTG 3118102 32 100.0 33 ................................ TTAAACAAGAGGTTCGCGAAGCACGTGCCAAAT 3118037 32 100.0 33 ................................ TTTAAACTTGTATCTTTTCCCGACTATATCTGA 3117972 32 100.0 34 ................................ AGGGTTACTTCGTATGCACCCTGCTTTTTAAGAG 3117906 32 100.0 35 ................................ TTACAAAATGGTAATTTTCCATTCTCGTAATAGAA 3117839 32 100.0 33 ................................ ATTTGGAGGGCGAGCCGTATGTGAATATATGCC 3117774 32 100.0 34 ................................ TTCAACACAATTAAAGCCAAGAACAAATGATTAA 3117708 32 100.0 33 ................................ AAATTCCGAAAACCGATATCAAGCAGATGTGGG 3117643 32 100.0 34 ................................ TTCAGATTATTAAGAACGAAGAAGATTTGGTGAT 3117577 32 100.0 35 ................................ TTTCCAACCGCTGCTGCAAAACTTGAATTTGTAAA 3117510 32 100.0 34 ................................ AACAGGTGTTTAACATACATATCCTGATACTGTG 3117444 32 100.0 33 ................................ AACAGCACTGCGTTATTGCCTTTATGCTTTATG 3117379 32 100.0 34 ................................ CAAGAAGCAGACCGCCAAGGCTTGCCAGTAGTAG 3117313 32 100.0 34 ................................ CTCCGGTGCATCCGGGAACTCAACCCCGTTTGCC 3117247 32 100.0 35 ................................ TCCATAACCGTCACCACCTCTCGACCAATCACGAC 3117180 32 100.0 35 ................................ TTCCTGATCATGGGAAAAAAGGCGTTGAGAAAGAC 3117113 32 100.0 33 ................................ TTGCGTCGCCAGTCATTAACGGTCATAACCCCG 3117048 32 100.0 36 ................................ TGATACTTCTCCGTCCTTGTGTTTGTGTGAAATAAG 3116980 32 100.0 37 ................................ ATTAGAATAAAATGCAAAAGCAACATAACATTCTCCC 3116911 32 100.0 35 ................................ TACAACAACCTGATCCAATACTGCAACAAAATAGG 3116844 32 100.0 35 ................................ ATTTTAGGCGAAACGGACAATGACCGGGAATACAA 3116777 32 96.9 34 ........................A....... TCCGATCCGTCGAGTATTTTGTAGTCAAATACAA 3116711 31 84.4 33 ..........-.ACG.........A....... TTATCCGTCTTACTACCTATGCGCTGTGCATAG T [3116706] 3116646 31 87.5 35 ..........-.ACG................. ATAAAAGAGATCAAAGGTATTTGGCGAGTTACGGA T [3116641] 3116579 32 100.0 34 ................................ ATTTGACATAACAATTAAAGAATAAAGCTATGCA 3116513 32 96.9 0 .......................A........ | ========== ====== ====== ====== ================================ ===================================== ================== 51 32 99.3 34 GTCGTACCTTATGTAGGTACGTGGGTTGAAAC # Left flank : TTAGATAATTATCCTGTCTTTTTAATAAAATAGCAGTATGTATGTTCTGGTCACATATGATGTAGAAACAATGACTCCTCAGGGACAACGCCGGTTACGACAAGTAGCACGACAGTGCATGAATTACGGGCAACGTGTTCAAAACTCCGTTTTTGAATGTTCTGTGTCTCCTACTCAGTTCACTGAATTAAGATTGAAACTATTAGATATTATAGATAGTAATAAAGATAGTATCCGTTTCTATTTCCTGGGTAATAATTACTCTAAAAGAGTCGAGTATATCGGAGTTGTCACGTCTTATAATGTAGAGGATGAGTTAATAATTTAAGTCTCTGCGAACCTGAAGTGGTAACGGATATACAAGGATGTTCGCTATTTCTGATTTTCAGCATATTATATGCTTTACCTTTCGTTCCACCATAAAGAAATAAGATAGTAAATAAAGTTTCGCATAACAGCATATCTAATATACTGTAAATGTTTGTGTTATTTATTATGGG # Right flank : ATCGAGTTGTACTTCAGCAGCCATCTGTCTTTTGTCGTACCTTATATAGGTAGGATGAACTCTTAGCCGCATTTCATTGACGCAATTGCCGCATCTTTTGCCAATACAGCGATTGCGTCATAATCACTATTATTCATTCTATTAATGTAACCCACACATATCCACCTCTCTACTCATAACTTATTAAATTATCAATTTCCTTATTTCATTACGCAAAACCGAGAGACTCCATCTTTCTTTTTTACACATTTCTGCATAATAATCACGATGCGACTTATTTTCTATCAAACATAGTTCCAAAAAATGAGCCCAAGTAAGTACTTCCGACAAATCAGACACCTGTTTATCCTCGCGGAAATAATCAAAAACCAACTCCATCTGAAATAACTGTTCCACTCCAAATTCTTCACCATAGCGCTTCACTAACTTTGGAGAAATTCTTTCAACATCATTCCTCCGAAGAATTGTTACCTTATCACTAACTTCCTGATTAATAAGTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATGTAGGTACGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 3128542-3125587 **** Predicted by CRISPRDetect 2.4 *** >NZ_UYXJ01000001.1 Parabacteroides goldsteinii DSM 19448 = WAL 12034 isolate Parabacteroides goldsteinii 81H9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 3128541 32 100.0 34 ................................ GTATTCCGGGGAAAGAAGGAAGATTTTGATAAGA 3128475 32 100.0 34 ................................ TTCCAGTCGTCTACTTTAATCGTCACCCAAACCA 3128409 32 100.0 33 ................................ CTGGAATGGTTTTACAGAATATCCTGACGGTAC 3128344 32 100.0 33 ................................ AGAAAGGGATACAGTCTCTGACTAAGGAATTGT 3128279 32 100.0 35 ................................ ACTTCTACGAACACCGTCGTCGCAAAGTATAATTT 3128212 32 100.0 35 ................................ TGATAATAGTCTATAACAAGAAACACATTCGACGC 3128145 32 100.0 35 ................................ TTTCATAAGACTTTGATTGTGTTTAGCGGGGTCTA 3128078 32 100.0 35 ................................ GTCTTCAGTAAACCAAATACGGAACTGACCGAACG 3128011 32 100.0 32 ................................ TTTGAAGGAGCGCAGATGGTATGGAACGGATA 3127947 32 100.0 35 ................................ ATCGGTACTGACGATTTACTAAATAATCTGGAACA 3127880 32 100.0 36 ................................ CTCTACCTGAGATATAGATAGCGTTAACCCCTTTAC 3127812 32 100.0 36 ................................ CTTCCCGGGCGTAATGCTCTGATAAAAGGCGGACTC 3127744 32 100.0 33 ................................ TGATGAATCCAGGGATGCACACGGTACAATTTT 3127679 32 100.0 33 ................................ ACGGGAGAAATTCTGCTATACGGCGTATCTTTA 3127614 32 100.0 34 ................................ AGGCTCACTATGTACCAACAAACAAGTACAAAAA 3127548 32 100.0 35 ................................ TTTATACGAAAGAAACTAACGGAATGCGGTATATA 3127481 32 100.0 34 ................................ TGTTTCTGTCTTATCTGCAATCTTTTCAGTCAGT 3127415 32 100.0 35 ................................ TTTGGGTCAATGTATTCTACCCCGTCATACCCCAG 3127348 32 100.0 34 ................................ TTTCTTAAGAATATTCGTTGAAGGAAAAGTAAAT 3127282 32 100.0 34 ................................ TACTATTAGTCATTAAAACTTGATAGGAATTGGT 3127216 32 100.0 34 ................................ ATATAGTTATGTGAATCATACCCCATGAAATTTA 3127150 32 100.0 34 ................................ TTGTTAAGAGCGTAACAATCGAACCCGTCCGGGT 3127084 32 100.0 35 ................................ TTTGAATTTATTTTGTTTTTAATGCTGCGCATTTT 3127017 32 100.0 34 ................................ CCTTTAATATTTCCGTTGGAGAAGCTGGTAAATA 3126951 32 100.0 34 ................................ TTTCAGATGAAGATATAACATACGCGATAGAAGA 3126885 32 100.0 34 ................................ TCAGCAAACGGTAAGCGTAATGCGGCAAGAAAAG 3126819 32 100.0 32 ................................ CACAAAACTGGGAATAATAGCTATTGTGCAAG 3126755 32 100.0 35 ................................ TGAAACTGAAGAGCAAATTAAAGGGAATGGACGAG 3126688 32 100.0 34 ................................ TTGCGGACTTGAAAAAGGTAATAGAACAACAAAT 3126622 32 100.0 36 ................................ TTCAAATACTGGATGGTAATAATCCAATGCCCCGTT 3126554 32 100.0 36 ................................ GTCGAATGCCCCCGCAAGAATTAATTGGGTTACCAC 3126486 32 100.0 34 ................................ CTTAAATTGGCAGGATTTTTGTGTATTTGGGCAA 3126420 32 100.0 34 ................................ CTTAGAAGATTTGCAGAAGGAAGTTGACGAAGGA 3126354 32 100.0 33 ................................ CCATCTGGAGCATCAGCATCATTAAAGTAAAAA 3126289 32 100.0 37 ................................ TTGCAATTGTAGCGAAGCTATGCCGGGCGGCATAAAA 3126220 32 100.0 35 ................................ TCATATTCGGAAGAAAATGGGCCTAAAGTCCCCCC 3126153 32 100.0 34 ................................ TATTTTATCTGCATTTTGAGTAATCTGGGTCTGT 3126087 32 100.0 35 ................................ TTGCAAGGAGGTGCTGGAGGAAATACCGCTATTAT 3126020 32 100.0 36 ................................ GTGACCTAACGGATCAGGATAACGAAACTCTCCAGG 3125952 32 100.0 35 ................................ AGTTCCTTGGCCTCTAGCCTACAAAACACGATCAA 3125885 32 100.0 35 ................................ GCCCTATATTATCTAAGCGTGCCCGGTAATTATCA 3125818 32 96.9 35 ........................G....... TTCCGCAATCTCTATTATATCCGACTTACGGCCGT 3125751 31 84.4 34 ......-.....GTA.........G....... TTTGAATTATCCCATGAACCCTCTACAATAGCAA A [3125741] 3125685 31 87.5 35 ......-.....GTA................. ATAGTTAAGGTTGAGCGTCTGGGTAAGCGATTATC A [3125675] 3125618 32 87.5 0 ........T.......T.....AA........ | ========== ====== ====== ====== ================================ ===================================== ================== 45 32 99.0 34 GTCGTATCCTTTACGGGTACGTGGATTGAAAC # Left flank : TTTCTGTCAGACTGACGCAACACGCAATACCTTGTAAAATAGAGATATTCCTTGCTGCAACACTATACGCATCTGTCCATATCAGCCACATATAATTAATTGACTGATAACGGATCATAATCTTTTATCAAGTTGGGATCCCCCACTATAGCAACATTGATTAGACCTAATAGAAGAACCGTTATATTCGAAATGATAGAAGGTTTTGCTAATTGAAGATTTTTTTATTCATGGTGTTATATATAATAAAAGCTTATTCTTAATTTTGTAGACAAAATTACAGATTACTTTATATATAACATTATTACACAACGATGTTTCAATTATAGATAAAACGCGAACCATAAGTGATAACAAAAACATAGGACATTCGCACTCCTTGTAATACAGATGTTTACATTTTTATTGATAATAAGACAGACATTGTTTATTGTCTTATATCATTATTCGCAGAATCATTCGCTGAAAGTGTTATAAATAAAGCTTTTGGTAAACATGCA # Right flank : TTAAACCAGCCCATAGAATCGTTCACGTCGCCTTCGTCATACCTTAAGGTACGTGGGTGAAATTCCAAGATGATAATTTGAATAGGTCAAGCCAGTATGTCGTATCCTCACAGGTACATGAATAATCCAGCACACATTTAAATTTAAGGGCTGAGAATAGCTATTTATCAAAAAATAAAATGTAGATTTGTATCCATAGGGGTAATTAATAAAGCTCTGTTTTCTAAGTACAGACTCCTATATTTTAATTAATCAACAGTTAACCTGACAATTATGGAATATCATAATAAAGAATATTGTTTAGAAGTTGAAGGTAAGCTTGCCTGTTTTACCCGCCCTGAAATGAAAATTGAGCGAGTTAGCTATGATGTGATTACACCTTCTGCTGCACGTGCTATCTTTGAAGCCATATTCTGGAAACCTGCCATTCGATGGAATATAACACGGATAGAAGTTTTGAAACCAATAAAATGGATTTCTTTTAAAAGAAATGAAGTAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTATCCTTTACGGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //