Array 1 96348-95272 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKS01000002.1 Akkermansia muciniphila strain GP29 scaf-2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 96347 31 100.0 34 ............................... TTACAATTTTGTAAAACTATAGCGATAGTACAAT 96282 31 100.0 39 ............................... CAATCGCCGGGGTTAAATAGTAGCGGTGGACAAAGAAGG 96212 31 100.0 34 ............................... CAATCGTAGATAGGATAGACCTTGTGAGCCAGTT 96147 31 100.0 34 ............................... CCGCCGCACAAGCGGAAGCGATTGAAGACGCCCT 96082 31 100.0 34 ............................... TGCGTACTCATGACTTGCGCCCGTGTACATGCTA 96017 31 100.0 33 ............................... TATTGTTTATTGTTTATCGTTAGTATGTTAGGG 95953 31 100.0 34 ............................... CGGGTGCAGATATTTGAAGTGGTTAGCAAGGCCT 95888 31 100.0 34 ............................... TGCTTCTGCGTCAGCTCATTGACGTCAAACTTAA 95823 31 100.0 34 ............................... AACGCAGGCGAAACGGTCTGCCCCCTCATAAAAG 95758 31 100.0 34 ............................... CTCCAGTGCGAGGCATAAGGGGTCAGAAATAATG 95693 31 100.0 34 ............................... CCCGGCGGGGGCGTCATCCGTCCAACGCACCCCG 95628 31 100.0 35 ............................... AGTCACTTACGGGGCAGGACTACCCGGGGACAAGG 95562 31 100.0 34 ............................... CGTCTACCTTCCACGACGGAGTGCGAGGCATATC 95497 31 100.0 34 ............................... CCCGGCGGGGGCGTCATCCGTCCAACGCACCCCG 95432 31 100.0 34 ............................... TTTTTATTGCGTTGTAACTCGCTGGTGCCCTGAC 95367 31 100.0 34 ............................... GTTGATGAGTAACTGCCAAGCTTGGTTCATCAGG 95302 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================= ================== 17 31 100.0 34 GTCGCACCCTCACGGGCGCGTGAATTGAAGT # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCGTTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGCGCGTGAATTGAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 14377-13470 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKS01000007.1 Akkermansia muciniphila strain GP29 scaf-7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 14376 33 100.0 34 ................................. ATCCGCCGCCGTAGACGGCGGAAATGAGGCTGAC 14309 33 100.0 34 ................................. TTTTAGTTAGTGTTCTCATTTCCGGGGGTTGCCC 14242 33 100.0 35 ................................. GTAGAATGCCCATGCCGGGCTTTCGTTGTCTTTTA 14174 33 100.0 34 ................................. CCACATGTGCACCATGTCCATATCTGCCAGCGCG 14107 33 100.0 34 ................................. AGCACACGGCGGATACCAAGCCGAACGCCCATTT 14040 33 100.0 34 ................................. AGGAGACGTTAACTATTTAGACGGGGTAGAGGCT 13973 33 100.0 34 ................................. CCTGGGACGTTAAACCTGCCCTTGCTGACCTTGA 13906 33 100.0 34 ................................. TTAGATGATAAAGAGAGCGGTGTACTCTTTTGTG 13839 33 100.0 34 ................................. CGGCGGCGGTTGCATAATCATACATGGATTTAAG 13772 33 100.0 35 ................................. TCCAGCCCCCTCCAATCTCAATCCCTATCGGAATA 13704 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 13638 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 13571 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [13548] 13502 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 14 33 99.8 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCGGCCTGTGCTACGGGTTCACGGGTGCCGCGTTGCGCCGGATGCTGGCGGTTCTGGACCGGCTGCCCATTGGGAGTGACGATCCGGAGGATATAGCAACGGGACGCCTGGCCATGGCCGCAGGGGTTCCTCTTCACATTGAGCGTCCCTGGTCGGCATCACGACCGGAGGGACGCTGGGCGGCCTACCGCTGGCCAACGATGCCGGCAGTAGCCAAATATGACCGGCTGGACGTGGTGACGCTGGGCACTCTTCACATGCCCCGGCAGCAGATGGACGCAGCAGAGTTCATCCGCGTATTTGACGAGTTGGCCGCCAGGAACGTGATCGGGGAGTAGGGGGGCCAGTTCAAGCCGTTTTCAAGGGAGGGGCAACCAGGTTGCAATGGGGATGCAACGGGGTGGCGTTCAAAGGTGAATTCGCCATCTTTCTGTCAATTTTCACCATATTCGCCGTCACGTTACACACGAAAACGGTTCCGGTATTCTGTCGCTCGTTCT # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 49461-46746 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKS01000007.1 Akkermansia muciniphila strain GP29 scaf-7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 49460 33 100.0 34 ................................. TGGATTAGAACCATGCATGGGCAGACCTTGGCAA 49393 33 100.0 34 ................................. AAGGTAAAGGAAGATGCCGTCACGAGAGATTACA 49326 33 100.0 34 ................................. TATGGCATCACCTACAGTCAGAGCCGCCATTTCC 49259 33 100.0 34 ................................. AATCAAGTCCCTAACCTTATAAGCATTGAAGTCT 49192 33 100.0 34 ................................. TTCCGGTTGCCAAGGTCTGCCCATGCATGGTTCT 49125 33 100.0 34 ................................. AAGGTAGCAGTTAGTCATCCGGCAACCCGGATTT 49058 33 100.0 34 ................................. GAGGTGTAAAGGTCTAAGAGCTTATCGGTTGAAA 48991 33 100.0 34 ................................. TTCATATTGTGTTCCTTTCTTGTTGGTGGGGGGT 48924 33 100.0 34 ................................. CCTGGGACGTTGCCCCCGCGCTGGATGATTTGGA 48857 33 100.0 34 ................................. TCTTAGCGTATAGCCGGTTGCCCTTCCATGTCAT 48790 33 100.0 33 ................................. ATGATTTAGTTTTCCTTTCTCTTTTAGTTTAGT 48724 33 100.0 34 ................................. GCAAATGGCCGGAATTTTGATGACCTCAAACTTC 48657 33 100.0 34 ................................. CGCCCGCTACGCTGAAAAAGTTTATTACGGGAAG 48590 33 100.0 34 ................................. TTTGCTACGATGGCGACGCCGCCGGGACAATAGG 48523 33 100.0 34 ................................. GATGAAAACAATTTAGCATTGTTTTTTATAAATT 48456 33 100.0 34 ................................. TGCTCGGATTTATCAACAAGAACCGGGGTTTCCC 48389 33 100.0 34 ................................. GATGAATGTAATTTAACACTATACTTTAAGAATT 48322 33 100.0 34 ................................. GCTTTGAGGATGTCCGATTCTTCCGGGTGGTCCC 48255 33 100.0 34 ................................. CTGCCCGTTCGTTGCCCGATACATCGAGTATAAG 48188 33 100.0 35 ................................. TCCCTGTAGATAGGGTCGATTAACGCAAATGCGGG 48120 33 100.0 34 ................................. GGCGATGACGACGATTTTGGTCAGGATTTACAAG 48053 33 100.0 34 ................................. CTCGCCAAAGGCGGCGAGGCTAAAATCGTCATCC 47986 33 100.0 36 ................................. CTGCCCCTGGGAGGCAGACGGATGATGCGGATCAGG 47917 33 100.0 34 ................................. GCCCCGCGGCAGGTCAGGACGGCGACGGAGAGGA 47850 33 100.0 34 ................................. AGGAGCACGGCGGAAACGCCTGTGCCGCGGCTCT 47783 33 100.0 34 ................................. GTTTGCAAGTACCCGGTGGGGCGTTCCGACCCTG 47716 33 100.0 33 ................................. CCATTTGGAGGCGATGCACGACATTTTGACCCA 47650 33 100.0 34 ................................. CACCATCATCTATCCCACCGGGGAACTAGTGACA 47583 33 100.0 35 ................................. CATGATTGTTTCCGTTTCCTCTGTAGGGTAGATGA 47515 33 100.0 34 ................................. TGCTGGCGTCAGATAGTAGCGGTGGACGAAAAAC 47448 33 100.0 34 ................................. GGTCCAGTATCACATCGATAATCATTGCTTTAAT 47381 33 100.0 34 ................................. TTATATAGTGTGCCGGGGAATCCGGGGGTGCAAT 47314 33 100.0 35 ................................. GCCTGTAGGGTAGATGACGGTGGAATAGGCAACTG 47246 33 100.0 34 ................................. CTTTCTTTTAGTTTTAGTGTTTCTTTTATTGTCC 47179 33 100.0 34 ................................. CTTGGTTCCGTCGCCCGTACCCCGGAAAATGTCA 47112 33 100.0 34 ................................. CGTGTTAATAGTCAAATATTGGACTATCTATCTC 47045 33 100.0 34 ................................. TTCGTAAAAGTCCGGGGAATGTACGTCTACCGCC 46978 33 100.0 33 ................................. CTACTATTCCGATAGGGATTGCTATTGAAGGGG 46912 33 100.0 34 ................................. TGGCATCTTGTCCCTTGTACTTTTTGCCGAAACT 46845 33 100.0 34 ................................. CGGGTGCAAAAACTTGAAGTGATTTGCGAGGCCT 46778 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 41 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : ACGTGAGGTGTGACAGGGATCATGGAAAAGGGGTGAATTTGGGGTGAAGAGGGGTGAAAGCTTGATGAATTAAAGGCTCGCAGGGTGGACAACGTGCAGGAAGAAAGAAGGTGAAAAATTCCGCGATAGAAATGAATTTGACAGAAAGATGGTGAATTTTTTTCGTTGAGTGCAATGTCGTTGCAAGAAGAGTGCAAACTAAGAGAAATAGCGGCCATGTCTGAATCAAATACACCTCTTGTTATAACGCCGATCCCAGTGTACGGATCAGTTACTGTCATATCTCCGCAGGACCAGGGTAATGCCCATCCCCAGACCTATCATCTGCGGGAGTCGGCCATTGTGCTAATATGGGCCACTCGTCAGGGTCATGAGATAACAGCATGGGTACGGGACGTGCTCAATAACGTGTGGGTGATTATCCACGAAGACGAGTGAAACAGGAAAACAAAAAGGCCGCCAGGAGCAACCTGACGGCCTTAATTGTATCATAGCCTAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //