Array 1 1-1403 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDX01000108.1 Acinetobacter baumannii strain ABBL043 contig-38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 61 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 121 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 181 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 241 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 301 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 361 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 421 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 481 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 541 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 601 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 661 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 721 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 781 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 841 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 901 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 961 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 1021 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 1081 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 1141 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 1201 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 1256 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 1316 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 1377 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 97.6 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : | # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-448 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDX01000138.1 Acinetobacter baumannii strain ABBL043 contig-67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 1 29 96.6 31 ............................T CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 61 29 93.1 31 A...........................T TATTATTAAACGGGAAAAGTATATTCTTGCT 121 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 181 29 100.0 31 ............................. TCATCAATAAGTTGGCCTTGATTTAAATAGT 241 29 100.0 31 ............................. GATACAAACGAGTTCGCATCTCGACCAGAAG 301 29 100.0 31 ............................. TTATCCAGATAAAACCATATCTACAAAGTGG 361 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTATTG 421 28 86.2 0 ...GC...................-.T.. | ========== ====== ====== ====== ============================= =============================== ================== 8 29 96.6 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : | # Right flank : ATTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1229-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDX01000099.1 Acinetobacter baumannii strain ABBL043 contig-3000058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 1228 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 1168 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 1108 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 1048 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 988 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 928 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 868 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 808 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 748 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 688 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 628 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 568 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 508 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 448 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 388 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 328 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 268 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 208 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 148 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 88 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= =============================== ================== 21 29 94.3 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : TCA # Right flank : A # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //