Array 1 1535-1148 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHJ02000328.1 Photorhabdus luminescens NBAII HiPL101 Chromous2_raw_6_trimmed_contig_328, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1534 28 100.0 32 ............................ TGCGAAAGATATTACCCCCGACCATATTAAGC 1474 28 100.0 32 ............................ GCTGAACAACATCGTGACGCACTAATTAAAAT 1414 28 100.0 32 ............................ AAAGCTTGGTATTTCACATAATCAGGTAGCCA 1354 28 96.4 32 ...........................T GGTCAGAGAAGTTATAAAACATTCAACTGAAA 1294 28 92.9 32 ............G..............T TATACCTACTTGCCGCTTTTACGTTTGCAAGA 1234 28 96.4 32 ............G............... AGTCTGTACGAATCCCGGCAATGTCTGGCAAT 1174 27 89.3 0 ...........T.........C-..... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AATTAAAGGTAGTATCTAAC # Right flank : AAAAAGAGTTTTGCTTTATTAATAGCAGAACTCTTTTTTTCCTTAAAATTTTGTATTAATAATACTTATTGACGTGTGTATCTTAAGAAATATTTAGGGAATTGAGGACGATATGCCCGTAGGAAAATAATGTAGCTTTGCCTGATAAATGCACCCGATCTCCATGTAATTCACACATAATGTTTCCACTGCGTTTTGACAATTGGCGTGCATACAATCTCTGTTTATTTAAACGGTCGCTCCAAAATGGGGCTAATACACAATGTGATGATCCGGTTACTGGATCTTCTGGTACGCCCTTAGCAGGTGCGAAATATCGGGAAACAAAGTCAATTTGTTGTTCATCTAGTGCTGTTATGACAACTCCTGGTAAAGGCAGAGTGGCTATTTTGTCAAAATTAGGTTTTGTATTTAAAACTTGTTCTGCGGTTTCTAGTAAACAAATGTAGCGATTATGAGAGACAAAAAGTTCGGATATTTTCTGACTTAATGCATTTTCG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCGCAGGCAGCTTAGAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 380-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHJ02000427.1 Photorhabdus luminescens NBAII HiPL101 Chromous2_raw_6_trimmed_contig_427, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 379 28 100.0 32 ............................ TACGCAAAAGAAGAACTGAGGGCTGAAATCGC 319 28 100.0 32 ............................ TTTTCTAACTTCTTGCTGTCTTGTCTGTATTT 259 28 100.0 32 ............................ TAGCTTCTGTCGCTTCACGATGTGCCGTATCA 199 28 100.0 32 ............................ ACATAGCAGATTTTGGCATTGATGATAGCTGC 139 28 100.0 32 ............................ TGTTAAATAGTCAATTAATCGATATTTGTTGT 79 28 92.9 0 .............T.A............ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : | # Right flank : AACAGTTCAATTAACTCAATGAGAGTCCGGCGAGTTCACTGCCGTACAGGCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-559 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHJ02000064.1 Photorhabdus luminescens NBAII HiPL101 Chromous2_raw_6_trimmed_contig_64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 19 67.9 32 ---------................... ATTCAGTGCTGAAGAAGCTGCTGGTATCTTAC 52 28 96.4 32 .............T.............. ATGACTAAAAATACAGAGTCTTTAATATCAGC 112 28 100.0 32 ............................ TATTGATACCTCTCAGTTCAGGTTTCCAATAT 172 28 100.0 32 ............................ TGCACGTAGCCGTTGTATTCCAGAGTACGATA C [182] 233 28 100.0 32 ............................ CAAGTTTAAATTAATTATGTCTGAGCATCAGA 293 28 100.0 32 ............................ TAGAATGACAATGGCTTATTTAGATTGTGAAT 353 28 100.0 32 ............................ AAGCAGGAAGACCGGAAGCACCGAGGCTATCA 413 28 100.0 32 ............................ GCTGAGCGTAAAATTTTGGTCTGTAGTTCAGT 473 28 100.0 32 ............................ ATTGAACGGAAACCGACAATTTGTTCAGCCGG 533 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 96.1 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : | # Right flank : ACACGATAACTGCCTTAGGTTGTTTAGGTATAAATGGGAGATTAATTGCGCAGCCTTGGGGCCAGTAGCTGATTGCGGATAGATTCTGCTAGTTCATCTAGAGAAGGTTGCTCTGGATGTTCATCAGATGTTTCATAGGCTAATTGCGCTTCAGCCAAATAAGTATGTACAGGTTGACCGTTGTCATCTTCCATCACAACGTGATACCAAGGAGCGGAACGCAAGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGAGAGTATTCCACATCAATATCCACGATGACTCCTAAATAACCAAGAAGCTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGATCTTGCATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCATACCCGGTGGTTGAAGCCTTTTTTTGCTTTAATTGCGAGTGTGACTTCATCTATTTCAGGTTAGCTGTAGTA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3234-2966 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHJ02000022.1 Photorhabdus luminescens NBAII HiPL101 Chromous2_raw_6_trimmed_contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3233 28 96.4 32 ...........C................ GCAGAGAGAGTTGGCTTCTATTTGGGTTATAA 3173 28 96.4 32 ...........C................ TTATCGGTAAAAATGCGGTCCGCTCTGACACC 3113 28 100.0 32 ............................ TTCTGTATCAAGTGCAAAATACACACCGACAA 3053 28 100.0 32 ............................ GTATTGTCGCGTACTTCAATTGGCGTCTGGTA 2993 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTGTACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGGTATTGATAGTGGCCGTGGAGTTTTAACTCACCAAGGGGATGCTATCAGAAATATTGAGGGCTCATTTCCTGGGGCAATAACAAATGGTTTTCATCTGGCAACAAAAGGGGCTTGTTATGCTAGTGCAACTTCTGGAATGGGTGTAGATGGAAAGCCTAGATCGGTAGGTCATTTTACCCCGGATGTTGTATACACTGAATACGGTTTTGGGTTCGATGCGTCAAGGGTTGTTCCAGTAACCTCAGAGAACCGCCCCCGCAATATAGCATTTAATTACATAGTGAGAGCAGCATAATGGTTGAATAGAAGTACCTTTTGAACCAAAAATAGAAGGGGAGGGTGCTCTACTTAAATGAAAGAAATTTTGACCCTTTTTTAACGGCAAATTTTAATTTATTGATTTTTAAATAAATATTATTCACCCCGTAAAAAAGGGTTTTTTGTTTTTTATAATGATTATTCTTTAACATTCAGTAGATTGGGGTTAATATGCAACA # Right flank : GCCAGCACTCTCACTTACCAACTGGTTTTCAGAACTGGCGGCTCAAGTGTGTCGATGAGAACAATGAATGTGTGTTTTATGAAGATAGGGATTCCTGTGACATTCCAGAATACTGTCGTTTAGATATTCGTGTCCAAATGCCGGAAGATTCAGTTTGGAATTTAAAACAGAAGGAGTTGCAGGAAGAGATAGAAGGAATAGGAGAAAAATAGTTTCCAGATATTAAATATAAATGATTTTGATATATTTTAGTTCCTAAAGTGTTGAATTACTTATTGTTGCTAGTGATATAAAAACAGTCAGTCTCCTAATAAATAGGAATACTGTATTACTCCTCTTTCTGCACTAGACTTTAATTTTAATAAATTACAGTCGGATTGTTTTTACAATAATTAAATATGTTGATTATAAAAAATATTATTCTGCTTAAGGAGGAATTACATGAGTCAAAAAAATGATTTTAAGGCTTTTTCTATTAGTAATAATGCTAATGTAATTAG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTGTACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 7087-6879 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHJ02000022.1 Photorhabdus luminescens NBAII HiPL101 Chromous2_raw_6_trimmed_contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7086 28 100.0 32 ............................ TCAGATGGTTACCATCAACCACAACATGCTCA 7026 28 100.0 32 ............................ TTCACCAACCGGCCCAAATATCTCAGTTGCAC 6966 28 96.4 32 .............T.............. GATACGCCTGCCGCCGTGGGCACGGAGCTGAT 6906 28 85.7 0 ....................T...A.TT | ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 32 GTGAACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTTCTGAATGGTCAATGATAGTCGGTAATACTTATTTTTTCGATAATAGTTATTGGTGAACGGTTATCAATGTTTTATAGGGATTTTCCCTGGCAGGAAAATATCTCATGTCATCATATATAACGATGGATTTGATATTGAAAAGTCAGGCCGATATGAAGGATATATTATTACAGAGGAGCATCTGTATAAGGTAAAATTCAGATCTTACAGCCGTTATTACCTTGTATCACCGGATGGGAAGAAATCGATTCCGCTGAGTGATGAATGGGATAAAATGGAAGATTTCTTGAAACGTAGTCGCTAGCTAAGAAAATTGCGTTAATGGTAACTTAAAAACTTGTGCATTCCCGAACCTAATTTTTAACCCTTTTTTAGCAGTCAATCGTAACTTATTGATTCTGAATTAAATGTTATCTCTTTTGTAAAAAAGGGTCTTTTGGGTTTTTTATAAATATATTCTTTGATAGTCAGTGGGTTGGAGTTAATATGTAACA # Right flank : CTTAAAGTTCTAGGTGTGGTTTAGAGTTATAGAAGTAAGGAATTTCTATTGAGTGATAAGACTGGAAATATTGGCCTCATATTGAGGTTGGTAAATACTCTACCTCAAGGGGGAGGTAGAGTATAAATGGGTTTGAGTTTTAATTGAGGCTTTTCACGTTTTACATGAAGCGACGTAAGCTTTATCAGATTAAATTTCCCTATAATCCAATTTTTCGAATGAATTTATAGCGCTATTTTTCGATAGATTATAAATTTTAACTCCTCTGTTTATTGCTATTTCATGAGCTAGGTTGAAACAAGGAATGATGAAATCGTGTAAGTTATTATTTAATTTGGTATCGAGTTTGTCATTTTGAGTTTCATAAAATCTTGGTTCTGAAAAATTGTTCATATCTAAACCTGCGAAATATATTTTTTTGTAGCCCAAAAACAATGCTATTTGCAGAGCGGAATATGCAACTGTTGTTCCGTTATAAAATCCAAGATTTAAGTTCAATG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //