Array 1 20942-21564 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCPY010000026.1 Longicatena sp. 210702-DFI.1.194 GKCLCAEJ_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================================================================================================================================= ================== 20942 33 100.0 32 ................................. GCAAGCAATAGATTGGAGTGATGAAGATGAAT 21007 33 100.0 33 ................................. GCTCATAACCCTGTCGACGAGTCCTGAATGCCA 21073 33 97.0 37 ......................C.......... ATCGCTAGAGTTTGTTCCACCTTTTATCTTTAGTCCT 21143 33 100.0 34 ................................. GATTTAACGAACATCATAAACCAAATGAACAAGT 21210 33 100.0 33 ................................. GATACCTTTCTGCAGCAGGTAGATGATCTACAG 21276 33 100.0 35 ................................. GACCATTTTTTGAAATAATCTTCCAGTACGCTGAT 21344 33 100.0 157 ................................. GAAGTAAATAAAGCAGATGAAGTTATCAGCGAAGGTCGCATCTTGTAAGAAGCGTGAGTTGAAATGATAAAGTATTCGATAGAGCACTCTATGAGAAACGCCGCATTCGCGAGATGTGTGAGTTGAAATTGAATCGTACATAATTATTTGTCAAAGT 21534 31 90.9 0 ....--.A......................... | ========== ====== ====== ====== ================================= ============================================================================================================================================================= ================== 8 33 98.5 52 GTCGTACCTCTTATGAGGTACGTGAGTTGAAAT # Left flank : ATATGAACACGATAAAAATGATGTGCATGATGTGATGCTGTTGTGTGAAACATTTCAAATAGCAATACCAGATGAATATAAGGAAAAGTAAAATTTCAGTTTTGTGTTGAATCTCTAAGCAAAATAGCTTATAATTTGACATGCTACATATAGTTATTATCCACAGTTATCGAGTAGGTGTTATCAATGCCGATAACAAAATGATAACATTAGCTCGTATAGGCAGGATAATATGGATATATCAAATAATCAAAAGAACGAGAAACATTACAGAGAATAATTCCTAAACAAAAAGCGTTAGTCTTTGTAGAGTTTGAATAAATTTAACTATTTAATAAGTTGGTGCGAATGGGAAGCATACATAAAAAAGCTAAGAGATTCGCACCAATTTTTTTGTATCATATGTTGTGATTTATAGAAAATAATTGAAGAAGTATTAAGAAAGTATATAAAATTTATACATTTCTTCTTTAAATGGTATGTTTTACATGAAGATTTGC # Right flank : TGTTGCATTTGGATTCATGTAAGTTATAACATTTATACAAATGTATAATTTCCTCTTCATTAAGATTTTTAAGGATTAGTAACACCATCGGCATGCACATGAATCCAAACACACCAAATAATTTACCACCTGCATACATACATAACAGCATTAACAAAGGATGCAGTCCTAACTGCTTTCCCATTAATTTAGGTTCTACTATATTACGTATTAAAGTAATAATTAAATATAATATTAATAATCCTATGGCTAGTTTATGTTGTCCTTGAACATAAGAAAACAGAATCCATGGTATCATAATACCGCCGGTACCTAATATTGGAAGTACATCAAAAATCGTTATGCCTAAGGCTATTAGCCAGGCTTTTTTTATATCTAAAATAGAAAGACCTATGACTAATTCAAAGAATGTTAATAGCATTAATTTGATTGTAGCTATAAACATGTTTAAAAAGGTATGAGTGGCAAAATAACGTATAGATAATATGATTTTTTGTGTT # Questionable array : NO Score: 4.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-1.81, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTCTTATGAGGTACGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: F [matched GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 33648-34548 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCPY010000026.1 Longicatena sp. 210702-DFI.1.194 GKCLCAEJ_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================================================= ================== 33648 33 100.0 33 ................................. ACCTGTACGCTCATCTGTTAACTCAATTTTGTG 33714 33 100.0 35 ................................. CATCATTGGCAAGTATTAAGCACTTCCCAATTTGC 33782 33 100.0 35 ................................. ATTTCAAACTTGGTTAGGTCAAATCAAATTTAAAG 33850 33 100.0 34 ................................. AAATGACGCTGTATTTATCGATTATTATACGCGT 33917 33 100.0 34 ................................. TCATACCATTCGGGTAATGTCTTTGGTTTTGATA 33984 33 100.0 34 ................................. CCGACGTGAAGACAATTTTTCATCGCATGAATCG 34051 33 100.0 34 ................................. TTTTATAGTGGTTGATTGTTGGTTAGTTGTTGGT 34118 33 100.0 34 ................................. CATCTGTCTAAATACATATAAGTCAGTTGCTATC 34185 33 100.0 36 ................................. TTTTTGTTTAATGATTTAAAGATAACTTCGATAATA 34254 33 100.0 34 ................................. ATGAATATATGGTAGGTGATAAATATGAACAACT 34321 33 100.0 32 ................................. GGTAATTTTGGAGATATTGAAATCTACGACCA 34386 33 97.0 97 ............................C.... AATTTTAATTGTTCATACGTGTTGATCTGCAGCTGTCGTACCTCTTGTACGAGAGTTGAAATAAATTGTATATGTATACTGCGATCTCCCCGGTTCC 34516 33 93.9 0 ............A.......T............ | ========== ====== ====== ====== ================================= ================================================================================================= ================== 13 33 99.3 39 GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT # Left flank : AGGTGATTTAGATGAATATGCACCATTTTTGTGGAAGTGATGATTATGATGGTATTAATAACATATGATGTGAATACAGAGGATAAAGCTGGGAGGAAACGTTTAAGGAAGGTAGCTAAGCATTGTTTGAATTATGGATTGCGAGTACAAAATTCAGTGTTTGAATGCAATGTAAATCAAAAAGAATATGTTGAATTGCAGCATGTATTGTCTACTGAAATCGATGAAAGTAAAGACAGCCTACGCTTCTATCTTTTAGGGAATAATTATAAAAATAAGATTATTCATATTGGAGCAAAACCAACATTCGATGTTACGGAACCTTTGATTTTTTAAATGTTGGTGCGAATGTGAAGCTAACATAAATTTCCTAGGACATTCGCACCTATTTTTGATTATTTTAATTGGATTTTTATGCTTTTATTTGATAGAAATTTAATTTTTATGTTAATTTAATGCAAATATTGTTACTAATATCGAGATTAAAAGCAATATTTGCT # Right flank : TTATTGATTTTAGATGAAAAATTATTGAGGATAATCGGTCGTACTTCTTACGAGAAATTCAGATGTCTATATGTAAGTATTTACAAATAAAAAAGGCAAATCCTCTTTGGATTTACCTTCCAAATAACGTATTAATCTGCCTTTTCTGTAACATCCTTCATCTTCTGCAAACCAAAGATAATAAGTCCACCAACTACAAACCATAAAATATCAAAAGAACTAAAACTCAATGGTGCTTTTGGTGTTGACAATGTTTGTGGTCCCATGATGATGGCATAAAAAGAACCAATCATCATACCGATTATCAGAAATATCATAATCGAACGATGTTTATCTAAAGCCCATTTGATAACCCGCACTACTGAAACAATTCCCGCTAAGATCCCCAATGCAAAGACAATCAGGATTGGCAGATAATCTAAGTTAAAGCTAATCACCGCTTTAACAGCACTTATGATAGGAACATAAAGTCCGAAAATCAATAATAAGGTAGAACCACT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //