Array 1 1847791-1849468 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCLK01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03340 2014LSAL03340_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1847791 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 1847852 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 1847913 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 1847974 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1848035 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 1848096 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 1848157 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 1848218 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 1848279 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 1848340 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 1848401 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 1848462 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 1848523 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 1848585 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 1848646 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 1848707 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 1848768 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 1848829 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 1848891 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 1848952 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 1849013 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 1849075 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 1849136 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 1849197 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 1849258 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 1849319 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 1849380 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1849441 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1865727-1867708 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCLK01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03340 2014LSAL03340_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1865727 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 1865788 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 1865849 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 1865910 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 1865971 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 1866032 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 1866093 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 1866154 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 1866215 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 1866276 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 1866337 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 1866398 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 1866459 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 1866520 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 1866581 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 1866642 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 1866703 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 1866764 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 1866825 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 1866886 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 1866947 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 1867008 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 1867069 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 1867130 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1867191 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1867252 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1867313 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1867374 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1867435 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1867496 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1867557 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1867618 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1867679 29 96.6 0 A............................ | A [1867705] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //