Array 1 356277-357585 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDSY01000004.1 Salmonella enterica subsp. enterica serovar Cerro strain 42 NODE_4_length_387181_cov_31.0878, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 356277 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 356338 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 356399 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 356460 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 356521 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 356582 29 100.0 32 ............................. GAGTCAGCCCAATGAGCAACATCGACAAATCA 356643 29 100.0 32 ............................. CAAAACGGCCTGGTAAGCTGGAATGACAACGC 356704 29 100.0 32 ............................. GCAACCCCGTTTCGCAGATCGCCGCCCTCGGA 356765 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 356826 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 356887 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 356948 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 357009 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 357070 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 357131 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 357192 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 357253 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 357314 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 357375 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 357436 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 357497 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 357558 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 374292-375785 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDSY01000004.1 Salmonella enterica subsp. enterica serovar Cerro strain 42 NODE_4_length_387181_cov_31.0878, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 374292 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 374353 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 374414 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 374475 29 100.0 32 ............................. GCTCCGCAACGGTACAGAGCAAAAAAACACGC 374536 29 100.0 32 ............................. CGCACTCAGGCCGGAAAAGTTATTTACGAAAT 374597 29 100.0 32 ............................. ACGCGCCGCCGCCTGGCGGCTTTAACTCAGGT 374658 29 100.0 32 ............................. CAGCCTCGTCCGACACGGATCAGGGTGAGGTA 374719 29 100.0 32 ............................. CCGTGATTCGACCTCTAAATGGGTTCTCATTC 374780 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 374841 29 100.0 32 ............................. TCGGTCGATCTGCATATCGATACCCGCGGTTA 374902 29 100.0 32 ............................. CACAGAAGACGATAACGGGAGATTTCCCTAAG 374963 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC 375024 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 375085 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 375146 29 100.0 32 ............................. TTTATTTTTTATTCGATATTGTTTTTGAATAT 375207 29 100.0 32 ............................. ATCACGCACCCGAAACCTACACCGGCTTATTC 375268 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 375329 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 375390 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 375451 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 375512 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 375573 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 375634 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 375695 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 375756 29 93.1 0 A...........T................ | A [375782] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //