Array 1 65662-64209 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLH010000012.1 Listeria seeligeri strain FSL W9-0474 NODE_12_length_110354_cov_61.064764, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 65661 29 100.0 36 ............................. TGAATCCGATGAGATATTCCGTCATGTTGAACGGTT 65596 29 100.0 34 ............................. TACGACGGGTTATGTGGTAGTTAGGGTTGACTTA 65533 29 100.0 35 ............................. CTTGTTACTTTCAATGACCTCGTGAGGCTCGATTT 65469 29 100.0 36 ............................. AACGAAGACTAATTTTATCAAGATTCCCGTAGGGGA 65404 29 100.0 34 ............................. GAATAAAGTCCTACTTTGACCCCAGTTTGACCTT 65341 29 100.0 35 ............................. GCCATAGGAGCGCCTACAATAGCATCGGTAAGAGT 65277 29 100.0 34 ............................. TTTGATAAATTTGACGTTCTCCCATCACTTTTCC 65214 29 100.0 36 ............................. CTTTTTTTAAAACATAGATAACCTTCGTCGGAAATT 65149 29 100.0 34 ............................. AGAAAGTTGTCGGCTGCGTTCATAACCTCACGAT 65086 29 100.0 37 ............................. ATGTTTTCTAGGAATCACCTTTGTATTATGAGATTTT 65020 29 100.0 37 ............................. AAATGTTCAGCTAATTCGTTGTTTGTTGCCGTAGGAT 64954 29 100.0 35 ............................. TAGGTATATTCCCGAACGTCACGATTCATTTCTTT 64890 29 100.0 36 ............................. AAAGGTGGCGATTTTCTAGGCATGTGTTCCGACGAT 64825 29 100.0 36 ............................. TATTCAACTGAATCAGGACCTTTTTTTGCTCCATCG 64760 29 100.0 37 ............................. ATCATTCTTAGGAGATTATAAAATATTAGAGGTTATA 64694 29 100.0 35 ............................. ACAGACGGCAATGAATTTCAAGAACGATTTTTAAA 64630 29 100.0 38 ............................. TCGCTTATATGCGAGTTGACAGCCGCGATAATATACTC 64563 29 100.0 35 ............................. ATATAACTAACATTTTCAGCGACGGACGCGTCCAT 64499 29 96.6 37 ......................A...... CTGGTTGGAAAATGAAAAAAGTGGCTAATGGTTATGT 64433 29 96.6 36 .........................G... TTCGAAGTTCAAACAACAAAAACAGCAATGGCTTAT 64368 29 96.6 36 .......C..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 64303 29 82.8 37 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCCC 64237 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 23 29 97.8 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGCGAGAAAATAAAATAGGTTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACCCCCCAACCCTCCATTTTTTTCGTCCAGCGAAAATCGTTTTCGAAATACTTGTAACCGCTTGCAAGGTTGAAGCTCTATAACTATAATGAACGTAGTAATTCAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 76174-74263 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLH010000012.1 Listeria seeligeri strain FSL W9-0474 NODE_12_length_110354_cov_61.064764, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 76173 29 100.0 37 ............................. AGCGGTAATATTAAGATTAAGGATAATGTTCGTGATT 76107 29 100.0 37 ............................. ACTTTTGCTGTTATACACAAAAAAAGAACTGGATGAG 76041 29 100.0 35 ............................. TTACAACTAGAAGATTTTAAAACAGAGCTTAATAA 75977 29 100.0 35 ............................. ACACAAATTACTCAGTATCAGTCAAGCGTAAATGG 75913 29 100.0 38 ............................. AAGAACGTCCCTGCATCATCTTCACTTTGAAGAGTGTA 75846 29 100.0 36 ............................. TGACCATTTACAAGCGCATCCATTTTGGGTGATACT 75781 29 100.0 37 ............................. CAAAATGGCTCTAAATAGCTTTTGTGTGTCGGCATAT 75715 29 100.0 37 ............................. ATTCCAGAGTGATAGCATTTCAAACTGAAAGGAGTTG 75649 29 100.0 34 ............................. TTATTGGATAAATTTGTAAAGGATTTAATTCTCC 75586 29 100.0 36 ............................. AAATGGTGCTTTTGAGGCAAAATATCGACGTAAACC 75521 29 100.0 35 ............................. ATAAAGGAAGTTCAAGTACTTCAAAAAGTAGTGGA 75457 29 100.0 37 ............................. AACGATTTTATGAGCAGATCGAGAATTTTTTTCTCTG 75391 29 100.0 38 ............................. TTTGTTCGATTTCATTAATTTTGTAGCTAGTTACCTCT 75324 29 100.0 36 ............................. ACATTTTGCTGAAGGTGGAGACGATAAGAATTTTAC 75259 29 100.0 35 ............................. TTCTTCTCAAAAATTGACTTAGTAAGACCGGTCAA 75195 29 100.0 36 ............................. GGACAAATAATTATTGGAACGACTAAAAACGCAGAT 75130 29 100.0 35 ............................. TTTGACTTATTTGAACTTCCGTTACTACTGCTATT 75066 29 100.0 37 ............................. TGCGTAAGTATTTCCTTCTGTATAGCCGCCAAGCTCC 75000 29 100.0 35 ............................. AAGTTTTTCCGGTTTTCAGCAACGATGACTCCGAA 74936 29 100.0 37 ............................. ATACTTAACGTTTGCTACCTTGCCCTCTCTTGTACGC 74870 29 100.0 35 ............................. GAAATAAACGAGAGTAATCTACCGTTCTAAGCAAT 74806 29 100.0 37 ............................. TCCTACAAGTCGCACGCCATTTAAGTAAACCTGCAGG 74740 29 100.0 34 ............................. CTAATCTGAGAATACTAAAACGAGCTTGTTCCGC 74677 29 100.0 35 ............................. ATTACATTTTTTTCCGCAGCCGCATCTGCTACTGC 74613 29 96.6 36 ..............A.............. TCGTTTGAATACAAACATAGGTCTACAGCAACACCA 74548 29 96.6 36 .........G................... CAAGTATAGCGATTTTACTTGATGACCCGGCTTGCT 74483 29 100.0 36 ............................. AATGTAATGACTTTGAGGATTTCATAAGGAAAGAGG 74418 29 100.0 34 ............................. AAGGTATTTATAGTCCCCCTCCACCGCCGTCCCA 74355 29 100.0 34 ............................. AATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 74292 29 86.2 0 ........C....C..A...........G | T [74265] ========== ====== ====== ====== ============================= ====================================== ================== 30 29 99.3 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCAGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTGCGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGTGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGATTTTGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCAAGTAGCACTATCATAAATTTTTCAGTCAAAAAAATTAAAAATCAAATTCTATACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAAATTCAATAAATCATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTATGTTAAATTAAACACAAACAACTGAGGGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACGGGAATTGAGAAATCTAGTCCAGAAAGATATAAAGATTTATTTGGTAGTAACAAGCGGAAAAATTACACTTTTTCGATATACCTGCCTAAGCCTAAAAATAATAAAAATGAAATTTATCTTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 83146-82402 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLH010000012.1 Listeria seeligeri strain FSL W9-0474 NODE_12_length_110354_cov_61.064764, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 83145 29 100.0 35 ............................. ATTTTTGCCATCTTTCGAATAATGGACTCCGTCAA 83081 29 100.0 37 ............................. ACAAGAAGCGATTAAATTATGAGCTATTGAGGCGGAG 83015 29 100.0 35 ............................. TAGATATATCCATATCTATACTGAGCTATAGGGAC 82951 29 100.0 37 ............................. ACAAATGCCGTTTTTGCTAAAAATCAAATTGATAATC 82885 29 100.0 36 ............................. TCAAAATGAATTCAGGAAAAAACATGGTTGAATATT 82820 29 100.0 36 ............................. AATCCCATATCTAGTTGTTGTAAAGCATCTAGACTG 82755 29 100.0 35 ............................. AGTGGTATATTTATCGTAAACGGCTTTGGGTTTTA 82691 29 100.0 36 ............................. TTTTTTATTGGTATTTTGCTAGTTTCGCCGCAAAAG 82626 29 100.0 36 ............................. AAATAATTCGCGCTAATGGATAGGTTTTTTGCAATC 82561 29 100.0 36 ............................. TGACACAGAGGGGGAATTTGAAGGACATGATATTAC 82496 29 100.0 37 ............................. GATGCTGCAGCGTATATAATTTAATTGAGCTAATTTT 82430 29 93.1 0 ..........T.C................ | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 99.4 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGTTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTACTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTTATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGTTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //